Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018782 Camellia sinensis var. sinensis HOM05D003126 ORTHO05D010530 1.0e-102 376.7 188 100.0
Actinidia25729 Actinidia chinensis HOM05D003126 ORTHO05D010530 1.0e-57 227.3 165 71.5
Rhsim03G0058300 Rhododendron simsii HOM05D003126 ORTHO05D010530 1.5e-45 186.8 177 61.6
TAR383G0388 Trochodendron aralioides HOM05D003126 ORTHO05D010530 1.6e-42 176.8 133 68.4
Hma1.2p1_1382F.1_g279410 Hydrangea macrophylla HOM05D003126 ORTHO05D010530 2.3e-41 172.9 136 69.9
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 3.9e-41 172.2 163 57.1
Nn8g41232 Nelumbo nucifera HOM05D003126 ORTHO05D010530 2.5e-40 169.5 154 61.7
vmacro07518 Vaccinium macrocarpon HOM05D003126 ORTHO05D010530 7.1e-35 151.4 205 46.3
CDE07G0165 Ceratophyllum demersum HOM05D003126 ORTHO05D010530 3.9e-33 145.6 163 50.3
PSO063G2008 Papaver somniferum HOM05D003126 ORTHO05D010530 8.6e-33 144.4 137 57.7
MBI16_g00828_MAGBIO Magnolia biondii HOM05D003126 ORTHO05D010530 2.5e-32 142.9 132 56.1
PSO170G0504 Papaver somniferum HOM05D003126 ORTHO05D010530 2.5e-32 142.9 137 57.7
MD17G1145400 Malus domestica HOM05D003126 ORTHO05D010530 1.8e-30 136.7 136 54.4
Aqoxy7G02661 Aquilegia oxysepala HOM05D003126 ORTHO05D010530 4.9e-28 128.6 90 70.0
Hund19380 Selenicereus undatus HOM05D003126 ORTHO05D010530 4.9e-28 128.6 177 45.2
Prupe.3G017800 Prunus persica HOM05D003126 ORTHO05D010530 6.4e-28 128.3 131 53.4
RcHm_v2.0_Chr2g0150031 Rosa chinensis HOM05D003126 ORTHO05D010530 8.4e-28 127.9 127 55.1
CiPaw.16G077500 Carya illinoinensis HOM05D003126 ORTHO05D010530 7.1e-27 124.8 110 60.9
CANSAT01G1393 Cannabis sativa HOM05D003126 ORTHO05D010530 4.6e-26 122.1 128 52.3
FvH4_6g37250 Fragaria vesca HOM05D003126 ORTHO05D010530 1.0e-25 120.9 127 52.0
FAN14G4997 Fragaria x ananassa HOM05D003126 ORTHO05D010530 3.0e-25 119.4 127 51.2
FAN09G1633 Fragaria x ananassa HOM05D003126 ORTHO05D010530 6.6e-25 118.2 127 50.4
Os04g0306800 Oryza sativa ssp. japonica HOM05D003126 ORTHO05D005034 6.6e-25 118.2 85 63.5
HPP92_010335 Vanilla planifolia HOM05D003126 ORTHO05D010530 2.5e-24 116.3 171 43.3
Cfa017786 Carpinus fangiana HOM05D003126 ORTHO05D010530 7.3e-24 114.8 183 44.8
Haze_18439 Corylus avellana HOM05D003126 ORTHO05D010530 1.6e-23 113.6 127 52.0
Potri.012G145100 Populus trichocarpa HOM05D003126 ORTHO05D010530 8.1e-23 111.3 178 46.1
QL06p053594 Quercus lobata HOM05D003126 ORTHO05D010530 1.4e-22 110.5 133 48.9
ATR0626G022 Amborella trichopoda HOM05D003126 ORTHO05D010530 1.8e-22 110.2 102 54.9
Atru.chr7.2706 Acer truncatum HOM05D003126 ORTHO05D010530 6.9e-22 108.2 164 43.3
GSVIVG01035585001 Vitis vinifera HOM05D003126 ORTHO05D010530 3.4e-21 105.9 87 60.9
SEGI_13274 Sequoiadendron giganteum HOM05D003126 ORTHO05D005034 4.9e-20 102.1 73 63.0
Glyma.15G272900 Glycine max HOM05D003126 ORTHO05D005034 1.5e-16 90.5 64 60.9
Duzib268G0285 Durio zibethinus HOM05D003126 ORTHO05D005034 2.5e-16 89.7 74 54.1
Mapoly0177s0019 Marchantia polymorpha HOM05D003126 ORTHO05D005034 2.5e-16 89.7 124 46.0
CARHR117720 Cardamine hirsuta HOM05D003126 ORTHO05D010530 5.6e-16 88.6 114 43.9
Phvul.005G036300 Phaseolus vulgaris HOM05D003126 ORTHO05D005034 7.3e-16 88.2 110 44.5
Pp3c3_23400 Physcomitrium patens HOM05D003126 ORTHO05D005034 7.3e-16 88.2 73 54.8
Ca_14367_v3 Cicer arietinum L. HOM05D003126 ORTHO05D005034 9.6e-16 87.8 78 50.0
Sabra16G0164800 Salix brachista HOM05D003126 ORTHO05D005034 1.3e-15 87.4 75 52.0
Lj3g0014064 Lotus japonicus HOM05D003126 ORTHO05D005034 2.1e-15 86.7 78 48.7
SMO116G0171 Selaginella moellendorffii HOM05D003126 ORTHO05D005034 2.1e-15 86.7 128 38.3
Ciclev10033914m.g Citrus clementina HOM05D003126 ORTHO05D005034 2.8e-15 86.3 79 48.1
DCAR_006297 Daucus carota HOM05D003126 ORTHO05D005034 2.8e-15 86.3 77 49.4
Thecc.01G412800 Theobroma cacao HOM05D003126 ORTHO05D005034 2.8e-15 86.3 74 51.4
CAN.G170.119 Capsicum annuum HOM05D003126 ORTHO05D005034 3.6e-15 85.9 78 48.7
TPR.G12288 Trifolium pratense HOM05D003126 ORTHO05D005034 3.6e-15 85.9 72 52.8
AT2G24350 Arabidopsis thaliana HOM05D003126 ORTHO05D010530 4.8e-15 85.5 128 45.3
Carub.0004s0368 Capsella rubella HOM05D003126 ORTHO05D010530 4.8e-15 85.5 125 40.0
Lalb_Chr03g0033961 Lupinus albus HOM05D003126 ORTHO05D005034 4.8e-15 85.5 64 57.8
Lalb_Chr19g0132091 Lupinus albus HOM05D003126 ORTHO05D005034 4.8e-15 85.5 64 57.8
Oeu047556.1 Olea europaea HOM05D003126 ORTHO05D005034 4.8e-15 85.5 76 46.1
COL.COLO4_23919 Corchorus olitorius HOM05D003126 ORTHO05D005034 6.2e-15 85.1 74 50.0
Medtr3g028140 Medicago truncatula HOM05D003126 ORTHO05D005034 6.2e-15 85.1 72 52.8
PSO339G3182 Papaver somniferum HOM05D003126 ORTHO05D005034 6.2e-15 85.1 69 52.2
PSO384G4480 Papaver somniferum HOM05D003126 ORTHO05D005034 6.2e-15 85.1 69 52.2
CBR_g472 Chara braunii HOM05D003126 ORTHO05D001316 8.1e-15 84.7 64 56.2
Duzib138G0006 Durio zibethinus HOM05D003126 ORTHO05D005034 8.1e-15 84.7 74 50.0
Glyma.08G153100 Glycine max HOM05D003126 ORTHO05D005034 8.1e-15 84.7 106 43.4
Nn1g00624 Nelumbo nucifera HOM05D003126 ORTHO05D005034 8.1e-15 84.7 99 41.4
TAR633G1448 Trochodendron aralioides HOM05D003126 ORTHO05D005034 8.1e-15 84.7 75 46.7
HPP92_015771 Vanilla planifolia HOM05D003126 ORTHO05D005034 1.1e-14 84.3 75 48.0
VMungo1080G1220 Vigna mungo HOM05D003126 ORTHO05D005034 1.1e-14 84.3 110 41.8
ATR0605G133 Amborella trichopoda HOM05D003126 ORTHO05D005034 1.4e-14 84.0 99 41.4
TAR636G3316 Trochodendron aralioides HOM05D003126 ORTHO05D005034 1.4e-14 84.0 75 46.7
GSVIVG01032066001 Vitis vinifera HOM05D003126 ORTHO05D005034 1.4e-14 84.0 75 48.0
Gohir.A08G027600 Gossypium hirsutum HOM05D003126 ORTHO05D005034 1.8e-14 83.6 74 50.0
CSS0008425 Camellia sinensis var. sinensis HOM05D003126 ORTHO05D005034 2.4e-14 83.2 75 48.0
Cpa.g.sc1688.1 Carica papaya HOM05D003126 ORTHO05D005034 2.4e-14 83.2 75 48.0
Gohir.D08G038300 Gossypium hirsutum HOM05D003126 ORTHO05D005034 2.4e-14 83.2 74 50.0
Gorai.004G036800 Gossypium raimondii HOM05D003126 ORTHO05D005034 2.4e-14 83.2 74 50.0
Lalb_Chr25g0283141 Lupinus albus HOM05D003126 ORTHO05D005034 2.4e-14 83.2 78 46.2
Potri.001G269200 Populus trichocarpa HOM05D003126 ORTHO05D005034 2.4e-14 83.2 121 40.5
SGA_v2.0_scaffold4G02256 Striga asiatica HOM05D003126 ORTHO05D005034 2.4e-14 83.2 75 49.3
TWI73G1191 Tripterygium wilfordii HOM05D003126 ORTHO05D005034 2.4e-14 83.2 88 44.3
Duzib168G1775 Durio zibethinus HOM05D003126 ORTHO05D010530 3.1e-14 82.8 97 49.5
Migut.B01323 Erythranthe guttata HOM05D003126 ORTHO05D005034 3.1e-14 82.8 75 46.7
HanXRQChr06g0185401 Helianthus annuus HOM05D003126 ORTHO05D005034 3.1e-14 82.8 74 48.6
Lj3g0024945 Lotus japonicus HOM05D003126 ORTHO05D005034 3.1e-14 82.8 75 46.7
Nn1g00625 Nelumbo nucifera HOM05D003126 ORTHO05D005034 3.1e-14 82.8 80 45.0
Solyc01g086980.4 Solanum lycopersicum HOM05D003126 ORTHO05D005034 3.1e-14 82.8 78 46.2
Dinv43458 Davidia involucrata HOM05D003126 ORTHO05D005034 4.0e-14 82.4 112 42.0
Lj9C630G6 Lonicera japonica HOM05D003126 ORTHO05D005034 4.0e-14 82.4 74 47.3
Nn7g36179 Nelumbo nucifera HOM05D003126 ORTHO05D005034 4.0e-14 82.4 119 39.5
Pp3c10_12150 Physcomitrium patens HOM05D003126 ORTHO05D005034 4.0e-14 82.4 73 53.4
Potri.009G063800 Populus trichocarpa HOM05D003126 ORTHO05D005034 4.0e-14 82.4 121 39.7
PGR044G1687 Punica granatum HOM05D003126 ORTHO05D005034 4.0e-14 82.4 178 33.1
Atru.chr11.2643 Acer truncatum HOM05D003126 ORTHO05D005034 5.3e-14 82.0 128 34.4
FAN03G0993 Fragaria x ananassa HOM05D003126 ORTHO05D005034 5.3e-14 82.0 75 46.7
HanXRQChr01g0016081 Helianthus annuus HOM05D003126 ORTHO05D005034 5.3e-14 82.0 74 48.6
Nitab4.5_0000634g0050 Nicotiana tabacum HOM05D003126 ORTHO05D005034 5.3e-14 82.0 61 55.7
Aqoxy1G00215 Aquilegia oxysepala HOM05D003126 ORTHO05D005034 6.9e-14 81.6 74 47.3
AL4G14744 Arabidopsis lyrata HOM05D003126 ORTHO05D010530 6.9e-14 81.6 128 42.2
SGA_v2.0_scaffold95G28793 Striga asiatica HOM05D003126 ORTHO05D005034 6.9e-14 81.6 75 48.0
THA.LOC104809863 Tarenaya hassleriana HOM05D003126 ORTHO05D005034 6.9e-14 81.6 75 45.3
Manes.10G145600 Manihot esculenta HOM05D003126 ORTHO05D005034 9.0e-14 81.3 75 46.7
Oeu010350.1 Olea europaea HOM05D003126 ORTHO05D005034 9.0e-14 81.3 75 45.3
MSTRG.20596 Avicennia marina HOM05D003126 ORTHO05D005034 1.2e-13 80.9 83 42.2
Dinv09367 Davidia involucrata HOM05D003126 ORTHO05D005034 1.2e-13 80.9 126 38.1
Migut.N01475 Erythranthe guttata HOM05D003126 ORTHO05D005034 1.2e-13 80.9 78 44.9
Nitab4.5_0003361g0050 Nicotiana tabacum HOM05D003126 ORTHO05D005034 1.2e-13 80.9 120 38.3
AL3G24310 Arabidopsis lyrata HOM05D003126 ORTHO05D005034 1.5e-13 80.5 123 39.8
CDE07G1013 Ceratophyllum demersum HOM05D003126 ORTHO05D005034 1.5e-13 80.5 77 46.8
TPR.G28465 Trifolium pratense HOM05D003126 ORTHO05D005034 1.5e-13 80.5 84 44.0
AT3G12640 Arabidopsis thaliana HOM05D003126 ORTHO05D005034 2.0e-13 80.1 122 35.2
Thhalv10000139m.g Eutrema salsugineum HOM05D003126 ORTHO05D010530 2.6e-13 79.7 128 43.0
Actinidia21560 Actinidia chinensis HOM05D003126 ORTHO05D005034 3.4e-13 79.3 61 52.5
Ca_23876_v3 Cicer arietinum L. HOM05D003126 ORTHO05D005034 4.5e-13 79.0 61 54.1
FvH4_7g00830 Fragaria vesca HOM05D003126 ORTHO05D005034 4.5e-13 79.0 132 34.1
FAN06G0385 Fragaria x ananassa HOM05D003126 ORTHO05D005034 4.5e-13 79.0 132 34.1
FAN10G2088 Fragaria x ananassa HOM05D003126 ORTHO05D005034 4.5e-13 79.0 132 34.1
Zm00001eb079940 Zea mays HOM05D003126 ORTHO05D005034 4.5e-13 79.0 80 42.5
BcaC01g04024 Brassica carinata HOM05D003126 ORTHO05D005034 7.6e-13 78.2 75 44.0
Cc02_g27720 Coffea canephora HOM05D003126 ORTHO05D005034 7.6e-13 78.2 75 45.3
ECA248G0857 Erigeron canadensis HOM05D003126 ORTHO05D005034 7.6e-13 78.2 113 39.8
Sp3g10780 Schrenkiella parvula HOM05D003126 ORTHO05D005034 7.6e-13 78.2 95 41.1
Actinidia20677 Actinidia chinensis HOM05D003126 ORTHO05D005034 9.9e-13 77.8 123 35.8
Gorai.009G009200 Gossypium raimondii HOM05D003126 ORTHO05D010530 9.9e-13 77.8 113 41.6
C03p45780 Brassica napus HOM05D003126 ORTHO05D005034 1.3e-12 77.4 75 44.0
Gohir.A05G008200 Gossypium hirsutum HOM05D003126 ORTHO05D010530 1.3e-12 77.4 121 43.0
Hma1.2p1_0312F.1_g121420 Hydrangea macrophylla HOM05D003126 ORTHO05D005034 1.3e-12 77.4 126 36.5
Zm00001eb424740 Zea mays HOM05D003126 ORTHO05D005034 1.7e-12 77.0 103 36.9
Aa31LG3G10 Aethionema arabicum HOM05D003126 ORTHO05D005034 2.9e-12 76.3 115 37.4
A03p37730 Brassica napus HOM05D003126 ORTHO05D005034 2.9e-12 76.3 63 49.2
BraA03t12928Z Brassica rapa HOM05D003126 ORTHO05D005034 2.9e-12 76.3 63 49.2
Psat4g148400 Pisum sativum HOM05D003126 ORTHO05D005034 2.9e-12 76.3 75 44.0
Prupe.2G010500 Prunus persica HOM05D003126 ORTHO05D005034 2.9e-12 76.3 172 30.2
AagrBONN_evm.TU.Sc2ySwM_117.3410 Anthoceros agrestis HOM05D003126 ORTHO05D005034 3.8e-12 75.9 140 35.7
CANSAT80G2854 Cannabis sativa HOM05D003126 ORTHO05D005034 3.8e-12 75.9 179 30.7
TWI09G0721 Tripterygium wilfordii HOM05D003126 ORTHO05D005034 3.8e-12 75.9 132 36.4
BcaB04g21048 Brassica carinata HOM05D003126 ORTHO05D005034 4.9e-12 75.5 83 39.8
Aa31LG7G12400 Aethionema arabicum HOM05D003126 ORTHO05D010530 6.4e-12 75.1 76 53.9
BcaB04g18712 Brassica carinata HOM05D003126 ORTHO05D005034 6.4e-12 75.1 117 38.5
Sed0002072 Sechium edule HOM05D003126 ORTHO05D005034 6.4e-12 75.1 133 37.6
MD07G1007800 Malus domestica HOM05D003126 ORTHO05D005034 8.4e-12 74.7 179 31.3
C01p52530 Brassica napus HOM05D003126 ORTHO05D005034 1.1e-11 74.3 135 34.8
Carub.0003s1199 Capsella rubella HOM05D003126 ORTHO05D005034 1.1e-11 74.3 108 36.1
MELO3C023966.2 Cucumis melo HOM05D003126 ORTHO05D005034 1.1e-11 74.3 133 36.8
BNapus_Darmor_BZH_scaffold_149p00170 Brassica napus HOM05D003126 ORTHO05D005034 1.4e-11 73.9 140 34.3
CsaV3_3G032240 Cucumis sativus L. HOM05D003126 ORTHO05D005034 1.4e-11 73.9 130 36.9
Sopen01g033970 Solanum pennellii HOM05D003126 ORTHO05D005034 1.4e-11 73.9 181 31.5
CDE04G0460 Ceratophyllum demersum HOM05D003126 ORTHO05D005034 2.4e-11 73.2 189 29.6
BraA01t04119Z Brassica rapa HOM05D003126 ORTHO05D005034 4.2e-11 72.4 132 34.8
Thecc.09G153400 Theobroma cacao HOM05D003126 ORTHO05D010530 4.2e-11 72.4 153 34.0
BolC1t05192H Brassica oleracea HOM05D003126 ORTHO05D005034 5.4e-11 72.0 139 32.4
BolC3t16853H Brassica oleracea HOM05D003126 ORTHO05D005034 5.4e-11 72.0 65 47.7
MD02G1314400 Malus domestica HOM05D003126 ORTHO05D005034 9.3e-11 71.2 175 30.9
Medtr8g037000 Medicago truncatula HOM05D003126 ORTHO05D005034 9.3e-11 71.2 75 45.3
BraA04t17475Z Brassica rapa HOM05D003126 ORTHO05D010530 1.6e-10 70.5 88 44.3
AUR62023054 Chenopodium quinoa HOM05D003126 ORTHO05D005034 1.6e-10 70.5 171 27.5
Rhsim01G0130500 Rhododendron simsii HOM05D003126 ORTHO05D005034 1.6e-10 70.5 112 34.8
AUR62009373 Chenopodium quinoa HOM05D003126 ORTHO05D005034 2.1e-10 70.1 186 26.9
Thhalv10020251m.g Eutrema salsugineum HOM05D003126 ORTHO05D005034 2.1e-10 70.1 173 30.1
AUR62028067 Chenopodium quinoa HOM05D003126 ORTHO05D010530 2.7e-10 69.7 52 65.4
CiPaw.13G003500 Carya illinoinensis HOM05D003126 ORTHO05D005034 3.5e-10 69.3 100 36.0
MBI01_g27625_MAGBIO Magnolia biondii HOM05D003126 ORTHO05D005034 3.5e-10 69.3 102 36.3
Hund03667 Selenicereus undatus HOM05D003126 ORTHO05D005034 6.0e-10 68.6 156 30.8
AUR62020663 Chenopodium quinoa HOM05D003126 ORTHO05D010530 7.9e-10 68.2 124 41.9
CARHR087150 Cardamine hirsuta HOM05D003126 ORTHO05D005034 1.0e-09 67.8 111 35.1
Cfa010743 Carpinus fangiana HOM05D003126 ORTHO05D005034 1.3e-09 67.4 63 47.6
Eucgr.J01261 Eucalyptus grandis HOM05D003126 ORTHO05D005034 1.3e-09 67.4 176 30.1
Sed0019357 Sechium edule HOM05D003126 ORTHO05D005034 1.3e-09 67.4 176 29.0
vmacro21181 Vaccinium macrocarpon HOM05D003126 ORTHO05D005034 2.3e-09 66.6 201 29.4
Sp4g03350 Schrenkiella parvula HOM05D003126 ORTHO05D010530 1.1e-08 64.3 150 34.7
Os08g0504600 Oryza sativa ssp. japonica HOM05D003126 ORTHO05D005034 1.5e-08 63.9 118 32.2
Psat5g204360 Pisum sativum HOM05D003126 ORTHO05D005034 1.9e-08 63.5 164 28.0
Sabra09G0047100 Salix brachista HOM05D003126 ORTHO05D005034 5.6e-08 62.0 126 31.0
Peaxi162Scf00428g00715 Petunia axillaris HOM05D003126 ORTHO05D005034 1.6e-07 60.5 68 42.6
Lsat_1_v5_gn_1_108381 Lactuca sativa HOM05D003126 ORTHO05D005034 6.2e-07 58.5 104 36.5
unitig_85.g27215 Utricularia gibba HOM05D003126 ORTHO05D005034 6.2e-07 58.5 172 28.5
Potri.006G079800 Populus trichocarpa HOM05D003126 ORTHO05D010530 1.1e-06 57.8 93 39.8
RcHm_v2.0_Chr1g0314991 Rosa chinensis HOM05D003126 ORTHO05D005034 1.1e-06 57.8 175 28.6
ClCG10G012470 Citrullus lanatus HOM05D003126 ORTHO05D005034 4.0e-06 55.8 75 37.3
CSS0033444 Camellia sinensis var. sinensis HOM05D003126 ORTHO05D005034 5.3e-06 55.5 39 59.0
Sc11g0009280 Simmondsia chinensis HOM05D003126 ORTHO05D005034 5.3e-06 55.5 174 29.3
Haze_03230 Corylus avellana HOM05D003126 ORTHO05D005034 6.9e-06 55.1 39 59.0
Zm00001eb034750 Zea mays HOM05D003126 ORTHO05D005034 6.9e-06 55.1 112 32.1


User provided reference genes

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