Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018701 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 1.1e-53 213.0 100 100.0
CSS0037923 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 1.2e-44 183.0 100 90.0
CSS0004825 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 2.8e-38 161.8 109 77.1
CSS0024449 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 1.2e-36 156.4 96 83.3
CSS0030659 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 4.6e-25 117.9 75 80.0
Hma1.2p1_0534F.1_g173690 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 8.7e-24 113.6 74 75.7
Hma1.2p1_1265F.1_g271353 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 8.7e-24 113.6 74 75.7
Dinv38803 Davidia involucrata HOM05D004522 ORTHO05D005887 1.1e-23 113.2 73 76.7
Hma1.2p1_0495F.1_g165690 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 1.3e-22 109.8 74 73.0
Gohir.D06G110400 Gossypium hirsutum HOM05D004522 ORTHO05D005887 2.1e-22 109.0 75 70.7
Dinv37488 Davidia involucrata HOM05D004522 ORTHO05D005887 2.8e-22 108.6 72 75.0
Gohir.A06G108300 Gossypium hirsutum HOM05D004522 ORTHO05D005887 3.6e-22 108.2 73 72.6
Gorai.010G125500 Gossypium raimondii HOM05D004522 ORTHO05D005887 3.6e-22 108.2 73 72.6
Nn4g23566 Nelumbo nucifera HOM05D004522 ORTHO05D005887 6.2e-22 107.5 74 71.6
Oeu005158.2 Olea europaea HOM05D004522 ORTHO05D005887 2.4e-21 105.5 75 73.3
vmacro18846 Vaccinium macrocarpon HOM05D004522 ORTHO05D005887 2.4e-21 105.5 74 68.9
CiPaw.07G210600 Carya illinoinensis HOM05D004522 ORTHO05D005887 3.1e-21 105.1 73 72.6
Eucgr.C02139 Eucalyptus grandis HOM05D004522 ORTHO05D005887 3.1e-21 105.1 76 67.1
Lj8C583T4 Lonicera japonica HOM05D004522 ORTHO05D005887 3.1e-21 105.1 74 71.6
Sc10g0004210 Simmondsia chinensis HOM05D004522 ORTHO05D005887 3.1e-21 105.1 92 58.7
ECA234G1339 Erigeron canadensis HOM05D004522 ORTHO05D005887 4.0e-21 104.8 74 68.9
Cfa013296 Carpinus fangiana HOM05D004522 ORTHO05D005887 9.0e-21 103.6 73 74.0
Thecc.09G000400 Theobroma cacao HOM05D004522 ORTHO05D005887 9.0e-21 103.6 73 68.5
Haze_21779 Corylus avellana HOM05D004522 ORTHO05D005887 3.4e-20 101.7 73 72.6
Migut.C00355 Erythranthe guttata HOM05D004522 ORTHO05D005887 7.6e-20 100.5 75 68.0
Potri.006G279700 Populus trichocarpa HOM05D004522 ORTHO05D005887 7.6e-20 100.5 73 68.5
Rhsim08G0228200 Rhododendron simsii HOM05D004522 ORTHO05D005887 7.6e-20 100.5 74 68.9
CANSAT25G3238 Cannabis sativa HOM05D004522 ORTHO05D005887 9.9e-20 100.1 74 70.3
unitig_60.g25825 Utricularia gibba HOM05D004522 ORTHO05D005887 1.7e-19 99.4 74 66.2
Actinidia21721 Actinidia chinensis HOM05D004522 ORTHO05D005887 2.2e-19 99.0 73 67.1
Sed0013871 Sechium edule HOM05D004522 ORTHO05D005887 2.2e-19 99.0 74 67.6
AUR62044451 Chenopodium quinoa HOM05D004522 ORTHO05D005887 2.9e-19 98.6 87 59.8
GSVIVG01035576001 Vitis vinifera HOM05D004522 ORTHO05D005887 2.9e-19 98.6 73 72.6
EL10Ac2g03676 Beta vulgaris HOM05D004522 ORTHO05D005887 4.9e-19 97.8 74 63.5
AUR62020658 Chenopodium quinoa HOM05D004522 ORTHO05D005887 4.9e-19 97.8 74 66.2
Psat6g033360 Pisum sativum HOM05D004522 ORTHO05D005887 4.9e-19 97.8 72 66.7
RhsimUnG0118700 Rhododendron simsii HOM05D004522 ORTHO05D005887 4.9e-19 97.8 74 66.2
VMungo0251G2701 Vigna mungo HOM05D004522 ORTHO05D005887 4.9e-19 97.8 73 67.1
Ciclev10007345m.g Citrus clementina HOM05D004522 ORTHO05D005887 6.4e-19 97.4 73 67.1
Lalb_Chr22g0361201 Lupinus albus HOM05D004522 ORTHO05D005887 6.4e-19 97.4 73 63.0
Sabra06G0216700 Salix brachista HOM05D004522 ORTHO05D005887 6.4e-19 97.4 75 66.7
TAR629G0385 Trochodendron aralioides HOM05D004522 ORTHO05D005887 6.4e-19 97.4 82 54.9
AUR62028071 Chenopodium quinoa HOM05D004522 ORTHO05D005887 1.1e-18 96.7 73 65.8
AUR62043895 Chenopodium quinoa HOM05D004522 ORTHO05D005887 1.1e-18 96.7 73 65.8
QL12p025652 Quercus lobata HOM05D004522 ORTHO05D005887 1.1e-18 96.7 73 69.9
Cpa.g.sc246.4 Carica papaya HOM05D004522 ORTHO05D005887 1.4e-18 96.3 73 67.1
Phvul.002G181900 Phaseolus vulgaris HOM05D004522 ORTHO05D005887 1.4e-18 96.3 73 67.1
Prupe.1G457500 Prunus persica HOM05D004522 ORTHO05D005887 1.4e-18 96.3 73 67.1
Ah.14g088390 Amaranthus hybridus HOM05D004522 ORTHO05D005887 1.9e-18 95.9 74 63.5
Nitab4.5_0000844g0320 Nicotiana tabacum HOM05D004522 ORTHO05D005887 1.9e-18 95.9 75 61.3
Nitab4.5_0011308g0040 Nicotiana tabacum HOM05D004522 ORTHO05D005887 1.9e-18 95.9 75 61.3
HanXRQChr16g0521121 Helianthus annuus HOM05D004522 ORTHO05D005887 2.4e-18 95.5 75 65.3
Atru.chr7.2700 Acer truncatum HOM05D004522 ORTHO05D005887 4.2e-18 94.7 73 63.0
Solyc02g081910.2 Solanum lycopersicum HOM05D004522 ORTHO05D005887 5.4e-18 94.4 75 60.0
Sopen02g026540 Solanum pennellii HOM05D004522 ORTHO05D005887 5.4e-18 94.4 75 60.0
Ca_01520_v3 Cicer arietinum L. HOM05D004522 ORTHO05D005887 7.1e-18 94.0 72 65.3
Lj5g0011494 Lotus japonicus HOM05D004522 ORTHO05D005887 7.1e-18 94.0 72 63.9
Peaxi162Scf00036g01311 Petunia axillaris HOM05D004522 ORTHO05D005887 7.1e-18 94.0 75 61.3
Glyma.14G137100 Glycine max HOM05D004522 ORTHO05D005887 9.3e-18 93.6 73 63.0
arahy.Tifrunner.gnm1.ann1.696W46 Arachis hypogaea HOM05D004522 ORTHO05D005887 1.2e-17 93.2 74 64.9
PSO063G2748 Papaver somniferum HOM05D004522 ORTHO05D005887 1.2e-17 93.2 74 66.2
PSO782G1701 Papaver somniferum HOM05D004522 ORTHO05D005887 1.2e-17 93.2 74 66.2
CAN.G809.41 Capsicum annuum HOM05D004522 ORTHO05D005887 1.6e-17 92.8 75 60.0
Glyma.17G196400 Glycine max HOM05D004522 ORTHO05D005887 1.6e-17 92.8 73 64.4
Manes.03G000450 Manihot esculenta HOM05D004522 ORTHO05D005887 1.6e-17 92.8 74 66.2
THA.LOC104819919 Tarenaya hassleriana HOM05D004522 ORTHO05D005887 1.6e-17 92.8 73 61.6
arahy.Tifrunner.gnm1.ann1.IIX4FM Arachis hypogaea HOM05D004522 ORTHO05D005887 3.5e-17 91.7 74 63.5
ClCG05G026380 Citrullus lanatus HOM05D004522 ORTHO05D005887 3.5e-17 91.7 73 64.4
MBI16_g42310_MAGBIO Magnolia biondii HOM05D004522 ORTHO05D005887 3.5e-17 91.7 94 53.2
RcHm_v2.0_Chr6g0305241 Rosa chinensis HOM05D004522 ORTHO05D005887 6.0e-17 90.9 73 61.6
SGA_v2.0_scaffold62G21366 Striga asiatica HOM05D004522 ORTHO05D005887 7.9e-17 90.5 74 62.2
FAN20G0828 Fragaria x ananassa HOM05D004522 ORTHO05D005887 1.8e-16 89.4 74 63.5
Aa31LG2G19110 Aethionema arabicum HOM05D004522 ORTHO05D005887 2.3e-16 89.0 73 63.0
FvH4_2g36580 Fragaria vesca HOM05D004522 ORTHO05D005887 3.0e-16 88.6 73 61.6
Sed0008341 Sechium edule HOM05D004522 ORTHO05D005887 3.0e-16 88.6 72 62.5
TWI63G0055 Tripterygium wilfordii HOM05D004522 ORTHO05D005887 3.9e-16 88.2 74 63.5
vmacro20064 Vaccinium macrocarpon HOM05D004522 ORTHO05D005887 3.9e-16 88.2 74 64.9
Aa31LG2G19120 Aethionema arabicum HOM05D004522 ORTHO05D005887 6.7e-16 87.4 74 62.2
CANSAT54G0998 Cannabis sativa HOM05D004522 ORTHO05D005887 8.7e-16 87.0 74 64.9
FAN27G1482 Fragaria x ananassa HOM05D004522 ORTHO05D005887 1.1e-15 86.7 73 58.9
Sp7g29090 Schrenkiella parvula HOM05D004522 ORTHO05D005887 1.1e-15 86.7 73 56.2
Thhalv10024242m.g Eutrema salsugineum HOM05D004522 ORTHO05D005887 1.5e-15 86.3 73 54.8
MD08G1125900 Malus domestica HOM05D004522 ORTHO05D005887 1.9e-15 85.9 74 62.2
Cc09_g04950 Coffea canephora HOM05D004522 ORTHO05D005887 2.5e-15 85.5 76 57.9
BcaNung01535 Brassica carinata HOM05D004522 ORTHO05D005887 3.3e-15 85.1 73 54.8
A03p60590 Brassica napus HOM05D004522 ORTHO05D005887 3.3e-15 85.1 73 54.8
C07p58490 Brassica napus HOM05D004522 ORTHO05D005887 3.3e-15 85.1 73 54.8
BolC7t46304H Brassica oleracea HOM05D004522 ORTHO05D005887 3.3e-15 85.1 73 54.8
BraA03t15100Z Brassica rapa HOM05D004522 ORTHO05D005887 3.3e-15 85.1 73 54.8
CARHR239110 Cardamine hirsuta HOM05D004522 ORTHO05D005887 3.3e-15 85.1 73 53.4
Migut.E00600 Erythranthe guttata HOM05D004522 ORTHO05D005887 3.3e-15 85.1 74 56.8
Carub.0007s0933 Capsella rubella HOM05D004522 ORTHO05D005887 7.4e-15 84.0 74 58.1
Hund03258 Selenicereus undatus HOM05D004522 ORTHO05D005887 7.4e-15 84.0 72 54.2
AT4G31210 Arabidopsis thaliana HOM05D004522 ORTHO05D005887 9.6e-15 83.6 73 53.4
MELO3C003609.2 Cucumis melo HOM05D004522 ORTHO05D005887 9.6e-15 83.6 74 58.1
SalBow1G6309 Salvia bowleyana HOM05D004522 ORTHO05D005887 9.6e-15 83.6 76 61.8
DCAR_006332 Daucus carota HOM05D004522 ORTHO05D005887 1.6e-14 82.8 77 59.7
Psat6g033400 Pisum sativum HOM05D004522 ORTHO05D005887 1.6e-14 82.8 72 56.9
BcaC09g51903 Brassica carinata HOM05D004522 ORTHO05D005887 2.1e-14 82.4 74 55.4
A01p07030 Brassica napus HOM05D004522 ORTHO05D005887 2.1e-14 82.4 74 55.4
C01p07770 Brassica napus HOM05D004522 ORTHO05D005887 2.1e-14 82.4 74 55.4
BraA01t00655Z Brassica rapa HOM05D004522 ORTHO05D005887 2.1e-14 82.4 74 55.4
AL7G20870 Arabidopsis lyrata HOM05D004522 ORTHO05D005887 2.8e-14 82.0 73 52.1
BolC1t00764H Brassica oleracea HOM05D004522 ORTHO05D005887 2.8e-14 82.0 74 55.4
TPR.G12110 Trifolium pratense HOM05D004522 ORTHO05D005887 3.7e-14 81.6 74 60.8
COL.COLO4_18648 Corchorus olitorius HOM05D004522 ORTHO05D005887 4.8e-14 81.3 73 58.9
Medtr0229s0020 Medicago truncatula HOM05D004522 ORTHO05D005887 4.0e-13 78.2 74 62.2
Medtr0245s0010 Medicago truncatula HOM05D004522 ORTHO05D005887 4.0e-13 78.2 74 62.2
Medtr1g009315 Medicago truncatula HOM05D004522 ORTHO05D005887 4.0e-13 78.2 74 62.2
Actinidia32105 Actinidia chinensis HOM05D004522 ORTHO05D005887 6.9e-13 77.4 69 59.4
TPR.G39482 Trifolium pratense HOM05D004522 ORTHO05D005887 9.0e-13 77.0 77 55.8
ATR0691G178 Amborella trichopoda HOM05D004522 ORTHO05D005887 2.6e-12 75.5 74 50.0
Aqoxy3G03771 Aquilegia oxysepala HOM05D004522 ORTHO05D005887 2.6e-12 75.5 76 53.9
CsaV3_3G047220 Cucumis sativus L. HOM05D004522 ORTHO05D005887 5.8e-12 74.3 75 53.3
MD15G1105700 Malus domestica HOM05D004522 ORTHO05D005887 1.3e-11 73.2 77 55.8
PGSC0003DMG400012781 Solanum tuberosum HOM05D004522 ORTHO05D005887 2.2e-11 72.4 69 53.6
Medtr1g009570 Medicago truncatula HOM05D004522 ORTHO05D005887 2.5e-10 68.9 68 55.9
SEGI_38297 Sequoiadendron giganteum HOM05D004522 ORTHO05D005887 1.2e-09 66.6 82 42.7
Zm00001eb280820 Zea mays HOM05D004522 ORTHO05D005887 7.9e-09 63.9 74 41.9
PSO478G3803 Papaver somniferum HOM05D004522 ORTHO05D005887 1.0e-08 63.5 76 43.4
HPP92_015554 Vanilla planifolia HOM05D004522 ORTHO05D005887 1.0e-08 63.5 83 38.6
Zm00001eb380580 Zea mays HOM05D004522 ORTHO05D005887 1.3e-08 63.2 74 43.2
CDE02G2996 Ceratophyllum demersum HOM05D004522 ORTHO05D005887 1.5e-07 59.7 73 45.2
AUR62038716 Chenopodium quinoa HOM05D004522 ORTHO05D005887 4.3e-07 58.2 29 89.7
Lsat_1_v5_gn_4_39420 Lactuca sativa HOM05D004522 ORTHO05D005887 2.1e-06 55.8 37 64.9


User provided reference genes

Program Settings