Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 5.3e-163 577.8 328 100.0
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 1.3e-132 476.9 328 82.9
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 1.8e-131 473.0 340 82.4
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.2e-127 460.3 328 80.5
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 4.7e-127 458.4 329 80.9
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 8.0e-127 457.6 323 82.7
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 6.8e-126 454.5 328 79.9
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 4.4e-125 451.8 328 78.4
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 9.8e-125 450.7 328 79.3
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 1.3e-124 450.3 333 77.5
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 2.9e-124 449.1 334 78.7
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 8.3e-124 447.6 328 78.4
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 8.3e-124 447.6 335 78.5
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 1.1e-123 447.2 328 79.0
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 1.4e-123 446.8 380 73.9
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 1.9e-123 446.4 329 79.3
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 1.9e-123 446.4 329 78.4
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 3.2e-123 445.7 328 76.2
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 1.2e-122 443.7 328 77.7
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.7e-122 442.6 333 76.9
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 2.7e-122 442.6 328 78.0
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 3.5e-122 442.2 330 78.5
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 6.0e-122 441.4 328 78.0
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 7.8e-122 441.0 328 77.4
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 1.3e-121 440.3 329 77.2
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 2.3e-121 439.5 328 78.4
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.3e-121 439.5 328 79.3
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 5.0e-121 438.3 329 77.2
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 6.6e-121 438.0 328 77.4
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 6.6e-121 438.0 328 76.8
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 1.5e-120 436.8 329 77.2
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 1.9e-120 436.4 329 76.0
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 3.3e-120 435.6 325 76.3
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 3.3e-120 435.6 328 76.5
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 5.6e-120 434.9 328 76.5
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 1.6e-119 433.3 329 75.1
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 2.1e-119 433.0 332 77.7
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 2.1e-119 433.0 361 72.3
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.8e-119 432.6 331 77.3
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 3.6e-119 432.2 322 78.6
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 6.2e-119 431.4 329 78.4
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 6.2e-119 431.4 331 77.0
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 6.2e-119 431.4 329 76.6
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 8.1e-119 431.0 329 76.6
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.1e-118 430.6 328 76.5
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 2.3e-118 429.5 323 76.2
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 5.2e-118 428.3 333 76.9
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 5.2e-118 428.3 328 76.5
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 6.8e-118 427.9 330 77.0
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 8.9e-118 427.6 328 76.2
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 1.2e-117 427.2 328 76.5
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 3.4e-117 425.6 328 76.8
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 5.8e-117 424.9 334 74.3
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 9.8e-117 424.1 330 74.5
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 9.8e-117 424.1 333 76.0
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 1.7e-116 423.3 336 75.0
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 2.9e-116 422.5 329 73.9
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 2.9e-116 422.5 330 75.2
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 8.3e-116 421.0 331 76.7
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 1.4e-115 420.2 331 74.9
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 1.9e-115 419.9 328 75.3
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 1.9e-115 419.9 328 75.0
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 3.2e-115 419.1 328 74.4
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 3.2e-115 419.1 325 75.4
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 4.1e-115 418.7 284 81.3
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 4.1e-115 418.7 329 74.5
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 7.1e-115 417.9 328 74.7
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 9.2e-115 417.5 338 74.0
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 9.2e-115 417.5 329 73.6
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 1.2e-114 417.2 329 74.8
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 1.6e-114 416.8 330 75.2
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 2.7e-114 416.0 328 75.6
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 3.5e-114 415.6 328 73.8
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 4.6e-114 415.2 330 74.2
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 6.0e-114 414.8 329 74.8
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.0e-113 414.1 328 72.6
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 1.7e-113 413.3 328 72.9
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.7e-113 413.3 307 72.3
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 3.0e-113 412.5 328 74.4
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 3.0e-113 412.5 328 74.4
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 3.0e-113 412.5 342 73.7
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 3.0e-113 412.5 330 73.9
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 3.9e-113 412.1 330 74.2
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 3.9e-113 412.1 328 72.3
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 5.1e-113 411.8 329 74.5
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 5.1e-113 411.8 329 74.5
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 5.1e-113 411.8 327 75.8
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 5.1e-113 411.8 342 72.5
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 8.6e-113 411.0 327 73.7
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 2.5e-112 409.5 328 74.1
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 2.5e-112 409.5 328 73.5
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 7.3e-112 407.9 328 73.2
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 1.6e-111 406.8 328 73.2
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 4.7e-111 405.2 328 71.3
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 6.2e-111 404.8 329 71.7
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.1e-110 404.1 324 73.8
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 1.4e-110 403.7 319 74.9
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 2.3e-110 402.9 328 71.6
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 3.1e-110 402.5 331 73.4
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 4.0e-110 402.1 329 71.1
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 4.0e-110 402.1 328 71.6
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 6.8e-110 401.4 324 72.8
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 6.8e-110 401.4 331 74.6
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 6.8e-110 401.4 326 72.4
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.2e-109 400.6 259 88.8
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 1.5e-109 400.2 326 72.1
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 2.0e-109 399.8 328 72.9
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.6e-109 399.4 329 72.6
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 3.4e-109 399.1 326 72.1
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 3.4e-109 399.1 326 72.1
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 3.4e-109 399.1 328 72.0
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 3.4e-109 399.1 328 72.0
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 4.4e-109 398.7 328 72.3
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 5.8e-109 398.3 328 72.3
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 7.6e-109 397.9 326 71.8
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 7.6e-109 397.9 326 71.8
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 9.9e-109 397.5 303 78.2
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.7e-108 396.7 331 71.6
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 2.2e-108 396.4 328 72.9
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 2.9e-108 396.0 331 71.6
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 3.7e-108 395.6 332 73.2
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 4.9e-108 395.2 303 75.6
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 8.4e-108 394.4 331 72.2
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 1.4e-107 393.7 332 72.6
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 3.2e-107 392.5 325 70.8
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.6e-106 390.2 330 72.1
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 2.7e-106 389.4 328 71.0
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 2.7e-106 389.4 323 71.8
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 3.0e-105 386.0 277 77.6
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.0e-105 386.0 306 75.8
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 2.5e-104 382.9 327 73.1
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 1.2e-103 380.6 261 84.3
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.8e-102 376.7 256 75.0
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 4.0e-102 375.6 330 70.3
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 1.3e-100 370.5 309 70.9
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 1.7e-100 370.2 304 72.7
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.2e-100 369.8 226 95.6
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 3.8e-100 369.0 273 76.2
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 8.4e-100 367.9 260 79.6
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.6e-98 362.1 329 60.5
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 2.8e-95 352.8 305 71.5
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 1.8e-94 350.1 281 72.2
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 2.4e-94 349.7 333 67.9
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 2.4e-91 339.7 311 67.2
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 2.1e-90 336.7 361 60.1
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.6e-90 335.5 231 85.3
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 2.5e-88 329.7 231 80.5
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 9.6e-88 327.8 330 63.9
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 9.6e-88 327.8 330 63.9
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 3.6e-87 325.9 272 65.8
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 4.5e-85 318.9 262 70.6
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 3.2e-83 312.8 246 79.3
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 6.7e-81 305.1 271 64.6
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 1.9e-80 303.5 256 74.2
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 3.7e-79 299.3 252 61.5
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.4e-78 296.6 288 60.8
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 3.1e-78 296.2 261 73.6
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 5.3e-78 295.4 236 78.4
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 8.4e-76 288.1 250 59.6
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 1.5e-72 277.3 196 83.2
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 5.5e-59 232.3 272 47.1
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 5.3e-54 215.7 302 46.7
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 1.0e-52 211.5 194 72.7
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 1.9e-51 207.2 149 70.5
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.5e-51 206.8 125 80.0
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 8.2e-47 191.8 235 62.6
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.6e-45 187.6 124 74.2
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 2.0e-45 187.2 149 67.1
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.5e-45 186.0 146 67.8
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.7e-37 160.2 261 44.1
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 5.9e-37 159.1 136 65.4
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 5.2e-33 146.0 97 71.1
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 1.2e-32 144.8 88 77.3
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 1.0e-28 131.7 108 70.4
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 1.2e-26 124.8 91 72.5
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 3.1e-22 110.2 178 51.1
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 3.6e-18 96.7 179 48.6
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 1.4e-17 94.7 107 66.4
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 2.0e-16 90.9 83 79.5
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 1.4e-14 84.7 122 46.7
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 8.0e-10 68.9 93 43.0
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 1.1e-06 58.5 120 27.5


User provided reference genes

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