Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017686 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.2e-41 171.8 83 100.0
CSS0002239 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.0e-29 132.1 73 89.0
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.3e-14 82.0 50 76.0
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 5.7e-13 77.4 50 72.0
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 1.3e-12 76.3 50 70.0
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 1.1e-11 73.2 50 66.0
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 1.1e-11 73.2 50 64.0
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 1.4e-11 72.8 50 64.0
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 3.1e-11 71.6 50 64.0
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 3.1e-11 71.6 50 64.0
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 4.1e-11 71.2 50 64.0
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 5.4e-11 70.9 50 66.0
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 7.0e-11 70.5 50 62.0
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 9.1e-11 70.1 50 64.0
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 1.2e-10 69.7 50 62.0
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 2.0e-10 68.9 50 60.0
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 2.0e-10 68.9 50 62.0
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 2.0e-10 68.9 50 62.0
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 2.7e-10 68.6 43 72.1
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 5.9e-10 67.4 50 64.0
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 5.9e-10 67.4 50 60.0
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 5.9e-10 67.4 44 68.2
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 7.7e-10 67.0 50 64.0
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 7.7e-10 67.0 50 58.0
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 7.7e-10 67.0 50 64.0
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 7.7e-10 67.0 50 64.0
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 7.7e-10 67.0 50 62.0
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 1.0e-09 66.6 50 60.0
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 1.3e-09 66.2 50 64.0
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 1.3e-09 66.2 66 53.0
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 1.3e-09 66.2 50 62.0
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 1.3e-09 66.2 50 64.0
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 1.3e-09 66.2 50 62.0
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 1.7e-09 65.9 50 58.0
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 2.2e-09 65.5 50 62.0
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 2.9e-09 65.1 50 58.0
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 2.9e-09 65.1 50 62.0
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 2.9e-09 65.1 50 62.0
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 2.9e-09 65.1 50 62.0
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 2.9e-09 65.1 50 60.0
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 2.9e-09 65.1 50 58.0
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 5.0e-09 64.3 50 62.0
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 5.0e-09 64.3 50 62.0
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 5.0e-09 64.3 50 60.0
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 6.5e-09 63.9 50 62.0
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 6.5e-09 63.9 50 60.0
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 6.5e-09 63.9 50 60.0
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 1.5e-08 62.8 50 58.0
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 1.9e-08 62.4 50 60.0
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.9e-08 62.4 50 58.0
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 1.9e-08 62.4 50 58.0
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 2.5e-08 62.0 50 56.0
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 2.5e-08 62.0 50 54.0
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 2.5e-08 62.0 50 60.0
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 3.2e-08 61.6 50 58.0
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 3.2e-08 61.6 50 60.0
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 3.2e-08 61.6 51 56.9
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 3.2e-08 61.6 50 54.0
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 3.2e-08 61.6 50 58.0
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 4.2e-08 61.2 50 60.0
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 4.2e-08 61.2 50 56.0
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 5.5e-08 60.8 50 58.0
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 5.5e-08 60.8 41 70.7
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 7.2e-08 60.5 43 65.1
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 7.2e-08 60.5 41 70.7
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 7.2e-08 60.5 50 56.0
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 7.2e-08 60.5 50 56.0
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 9.4e-08 60.1 50 56.0
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 1.2e-07 59.7 50 56.0
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 1.6e-07 59.3 50 54.0
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 1.6e-07 59.3 50 58.0
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 1.6e-07 59.3 50 54.0
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 1.6e-07 59.3 50 54.0
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 2.1e-07 58.9 50 54.0
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 2.7e-07 58.5 43 65.1
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 3.6e-07 58.2 44 61.4
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 6.1e-07 57.4 50 54.0
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 6.1e-07 57.4 50 52.0
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 8.0e-07 57.0 44 59.1
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 8.0e-07 57.0 50 54.0
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 8.0e-07 57.0 50 54.0
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.4e-06 56.2 45 62.2
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 1.4e-06 56.2 50 54.0
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 1.4e-06 56.2 50 54.0
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 1.4e-06 56.2 50 54.0
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 1.4e-06 56.2 50 54.0
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 1.8e-06 55.8 41 68.3
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 1.8e-06 55.8 50 54.0
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 2.3e-06 55.5 50 52.0
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 2.3e-06 55.5 41 63.4
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 5.2e-06 54.3 50 50.0
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 5.2e-06 54.3 50 52.0


User provided reference genes

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