Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.0e-62 242.3 121 100.0
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.0e-55 218.0 132 87.1
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.2e-54 216.5 132 86.4
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 5.4e-44 181.0 120 78.3
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 5.4e-44 181.0 123 78.0
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 3.5e-43 178.3 122 77.9
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 2.2e-42 175.6 122 74.6
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 2.2e-42 175.6 122 73.0
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 2.9e-42 175.3 122 73.8
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 5.0e-42 174.5 122 73.8
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 1.1e-41 173.3 122 72.1
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 1.1e-41 173.3 122 73.8
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 1.1e-41 173.3 122 73.8
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 1.5e-41 172.9 122 73.0
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 1.5e-41 172.9 122 74.6
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.9e-41 172.6 122 73.0
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 2.5e-41 172.2 122 75.4
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 2.5e-41 172.2 122 73.0
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 2.5e-41 172.2 122 73.0
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 3.2e-41 171.8 120 74.2
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 3.2e-41 171.8 123 74.0
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 3.2e-41 171.8 122 73.8
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 4.2e-41 171.4 122 72.1
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 5.5e-41 171.0 122 74.6
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 9.5e-41 170.2 120 72.5
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 9.5e-41 170.2 122 71.3
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 1.2e-40 169.9 122 73.0
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 1.2e-40 169.9 122 73.8
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 1.2e-40 169.9 122 73.0
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.6e-40 169.5 120 72.5
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 2.1e-40 169.1 122 71.3
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 2.1e-40 169.1 122 73.0
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 2.1e-40 169.1 122 69.7
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 2.1e-40 169.1 122 73.0
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 2.8e-40 168.7 122 70.5
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 3.6e-40 168.3 122 72.1
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 4.7e-40 167.9 122 71.3
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 4.7e-40 167.9 122 72.1
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 4.7e-40 167.9 122 73.0
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 6.1e-40 167.5 122 73.8
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 8.0e-40 167.2 122 72.1
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 8.0e-40 167.2 122 72.1
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 8.0e-40 167.2 119 71.4
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 8.0e-40 167.2 119 73.9
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 1.0e-39 166.8 124 72.6
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.0e-39 166.8 122 72.1
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.0e-39 166.8 122 72.1
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 1.4e-39 166.4 122 72.1
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 1.4e-39 166.4 122 72.1
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 3.0e-39 165.2 122 68.9
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 3.0e-39 165.2 122 73.0
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 8.8e-39 163.7 123 70.7
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 8.8e-39 163.7 122 70.5
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 8.8e-39 163.7 122 70.5
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 1.2e-38 163.3 122 71.3
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 1.5e-38 162.9 122 71.3
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 2.0e-38 162.5 122 68.9
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 2.0e-38 162.5 123 69.9
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 2.6e-38 162.2 122 71.3
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 4.4e-38 161.4 122 68.9
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 5.7e-38 161.0 120 71.7
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 5.7e-38 161.0 122 69.7
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 9.8e-38 160.2 122 67.2
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 9.8e-38 160.2 120 70.0
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 9.8e-38 160.2 122 68.0
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 1.3e-37 159.8 123 69.1
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 1.3e-37 159.8 122 68.0
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.7e-37 159.5 122 70.5
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.7e-37 159.5 122 70.5
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 2.2e-37 159.1 118 69.5
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 2.8e-37 158.7 122 69.7
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 4.9e-37 157.9 122 67.2
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 8.3e-37 157.1 122 68.0
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 1.4e-36 156.4 123 66.7
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 1.8e-36 156.0 123 66.7
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 3.1e-36 155.2 123 69.1
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 5.4e-36 154.5 112 72.3
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 7.0e-36 154.1 122 66.4
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 7.0e-36 154.1 122 66.4
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.6e-35 152.9 129 64.3
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 2.0e-35 152.5 122 63.9
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 2.7e-35 152.1 122 63.9
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 3.5e-35 151.8 122 63.1
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 1.0e-34 150.2 122 65.6
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 1.0e-34 150.2 124 63.7
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 1.3e-34 149.8 122 64.8
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 1.3e-34 149.8 122 63.1
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 1.3e-34 149.8 122 63.1
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 1.3e-34 149.8 122 63.1
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 1.3e-34 149.8 122 63.1
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 1.7e-34 149.4 122 62.3
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 3.8e-34 148.3 145 60.0
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 2.5e-33 145.6 122 60.7
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 4.3e-33 144.8 119 62.2
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 4.3e-33 144.8 119 62.2
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 7.3e-33 144.1 152 53.9
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 1.2e-32 143.3 126 58.7
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 1.2e-32 143.3 120 64.2
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 1.2e-32 143.3 122 61.5
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 1.6e-32 142.9 120 64.2
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.6e-32 141.7 72 98.6
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.7e-32 141.4 74 95.9
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 4.0e-31 138.3 150 53.3
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 4.0e-31 138.3 116 63.8
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 5.2e-31 137.9 122 60.7
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 9.8e-30 133.7 122 63.1
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 8.3e-29 130.6 121 59.5
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 8.3e-29 130.6 129 54.3
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 7.8e-27 124.0 120 58.3
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 1.1e-25 120.2 76 75.0
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 1.5e-25 119.8 119 55.5
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 1.9e-25 119.4 72 80.6
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 5.6e-25 117.9 120 58.3
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 1.3e-21 106.7 124 48.4
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 2.2e-21 105.9 76 69.7
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 4.9e-21 104.8 68 75.0
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 4.9e-21 104.8 82 67.1
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 5.4e-20 101.3 68 70.6
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 7.0e-20 100.9 108 50.0
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 3.5e-19 98.6 110 53.6
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 7.8e-19 97.4 110 55.5
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 7.8e-19 97.4 111 49.5
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 2.0e-14 82.8 80 61.2
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 2.9e-13 79.0 72 61.1
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 8.3e-13 77.4 53 77.4
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 4.1e-12 75.1 40 90.0
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 2.1e-11 72.8 72 48.6
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 3.0e-10 68.9 40 87.5
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 3.6e-08 62.0 67 40.3


User provided reference genes

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