Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.9e-70 268.5 138 100.0
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 6.1e-68 260.8 138 97.8
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.8e-54 214.9 132 86.4
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 3.8e-54 214.9 123 89.4
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 4.2e-53 211.5 120 88.3
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 7.2e-53 210.7 122 88.5
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 1.4e-51 206.5 122 82.8
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 1.4e-51 206.5 122 84.4
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 1.4e-51 206.5 122 84.4
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 1.4e-51 206.5 122 84.4
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 1.8e-51 206.1 122 83.6
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 1.8e-51 206.1 122 83.6
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 3.0e-51 205.3 122 84.4
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 3.0e-51 205.3 122 82.8
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 3.0e-51 205.3 122 83.6
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 3.9e-51 204.9 122 85.2
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 5.2e-51 204.5 122 82.8
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 8.8e-51 203.8 122 82.8
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 8.8e-51 203.8 122 84.4
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.1e-50 203.4 122 82.8
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.5e-50 203.0 122 85.2
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.5e-50 203.0 122 85.2
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 3.3e-50 201.8 120 83.3
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 3.3e-50 201.8 122 83.6
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 3.3e-50 201.8 122 81.1
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 4.4e-50 201.4 123 82.9
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 5.7e-50 201.1 120 84.2
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 5.7e-50 201.1 122 82.0
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 7.4e-50 200.7 122 81.1
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 7.4e-50 200.7 122 84.4
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 7.4e-50 200.7 122 83.6
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.3e-49 199.9 120 82.5
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 1.3e-49 199.9 122 82.0
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 1.3e-49 199.9 122 83.6
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 1.3e-49 199.9 122 79.5
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 2.2e-49 199.1 122 82.0
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 2.2e-49 199.1 119 84.9
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 2.2e-49 199.1 122 84.4
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 3.7e-49 198.4 122 82.0
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 3.7e-49 198.4 122 82.8
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 3.7e-49 198.4 122 82.8
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 3.7e-49 198.4 122 82.0
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 3.7e-49 198.4 122 81.1
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 4.8e-49 198.0 122 82.8
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 4.8e-49 198.0 122 82.0
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 6.3e-49 197.6 122 81.1
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 8.2e-49 197.2 122 80.3
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 1.1e-48 196.8 119 81.5
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 1.8e-48 196.1 122 82.0
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 1.8e-48 196.1 124 82.3
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 2.4e-48 195.7 123 81.3
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 2.4e-48 195.7 122 82.0
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 2.4e-48 195.7 122 78.7
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 5.3e-48 194.5 122 80.3
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 5.3e-48 194.5 122 80.3
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 7.0e-48 194.1 122 81.1
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 9.1e-48 193.7 122 81.1
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 9.1e-48 193.7 123 79.7
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 1.2e-47 193.4 122 78.7
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 1.6e-47 193.0 122 77.9
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.5e-47 191.8 120 81.7
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 3.5e-47 191.8 122 78.7
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 4.5e-47 191.4 122 78.7
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 5.9e-47 191.0 122 77.9
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 5.9e-47 191.0 123 78.9
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 7.7e-47 190.7 122 80.3
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 1.0e-46 190.3 120 80.0
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 1.3e-46 189.9 122 76.2
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 2.2e-46 189.1 122 77.9
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 5.0e-46 188.0 122 77.9
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 6.5e-46 187.6 123 76.4
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 8.5e-46 187.2 118 78.0
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 8.5e-46 187.2 123 79.7
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 8.5e-46 187.2 122 77.9
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 8.5e-46 187.2 122 77.9
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 8.5e-46 187.2 123 76.4
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 1.9e-45 186.0 122 77.0
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 1.9e-45 186.0 122 77.0
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 7.2e-45 184.1 112 82.1
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 9.4e-45 183.7 122 74.6
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 9.4e-45 183.7 124 74.2
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 2.7e-44 182.2 122 73.8
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 3.6e-44 181.8 122 73.0
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 4.7e-44 181.4 129 72.1
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 4.7e-44 181.4 122 75.4
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 6.1e-44 181.0 122 73.8
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 6.1e-44 181.0 122 73.8
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 6.1e-44 181.0 122 73.8
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 6.1e-44 181.0 122 73.8
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 1.0e-43 180.3 122 74.6
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 1.4e-43 179.9 145 69.0
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 5.2e-43 177.9 122 72.1
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 1.2e-42 176.8 122 71.3
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 2.0e-42 176.0 119 73.1
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 2.0e-42 176.0 119 73.1
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 4.4e-42 174.9 120 74.2
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 9.8e-42 173.7 122 71.3
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 1.3e-41 173.3 120 73.3
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.2e-41 172.6 152 60.5
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.4e-40 169.9 100 88.0
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 2.4e-40 169.1 122 71.3
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 2.4e-40 169.1 126 69.0
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 2.4e-40 169.1 150 61.3
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 7.0e-40 167.5 116 73.3
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 5.9e-39 164.5 122 73.0
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 5.5e-37 157.9 129 60.5
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 3.6e-36 155.2 121 65.3
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 1.8e-35 152.9 120 66.7
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 2.2e-33 146.0 119 64.7
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 5.4e-32 141.4 120 65.0
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 7.7e-31 137.5 72 95.8
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 1.5e-29 133.3 82 79.3
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 4.0e-27 125.2 124 52.4
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 2.9e-25 119.0 122 57.4
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 1.1e-24 117.1 108 53.7
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 1.4e-24 116.7 72 79.2
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 1.8e-24 116.3 71 78.9
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 2.4e-24 115.9 111 52.3
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 4.1e-24 115.2 122 55.7
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 1.3e-22 110.2 80 75.0
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 1.5e-21 106.7 72 75.0
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.6e-20 103.2 71 70.4
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 2.1e-20 102.8 62 79.0
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 8.0e-20 100.9 77 62.3
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 9.5e-13 77.4 53 77.4
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 4.7e-12 75.1 40 90.0
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 1.5e-10 70.1 72 47.2
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 3.4e-10 68.9 40 87.5
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-07 59.3 67 38.8


User provided reference genes

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