Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016165 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 2.1e-216 755.4 367 100.0
CSS0003964 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 3.4e-110 402.5 318 69.2
CSS0033470 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 1.0e-109 401.0 322 68.6
vmacro00977 Vaccinium macrocarpon HOM05D005290 ORTHO05D006040 2.2e-93 346.7 327 59.9
Dinv41762 Davidia involucrata HOM05D005290 ORTHO05D006040 2.3e-90 336.7 323 61.9
Thecc.08G192800 Theobroma cacao HOM05D005290 ORTHO05D006040 7.4e-89 331.6 323 58.2
Duzib177G0512 Durio zibethinus HOM05D005290 ORTHO05D006040 3.7e-88 329.3 318 58.5
Hma1.2p1_0004F.1_g003900 Hydrangea macrophylla HOM05D005290 ORTHO05D006040 3.7e-88 329.3 321 58.6
TAR381G0263 Trochodendron aralioides HOM05D005290 ORTHO05D006040 6.3e-88 328.6 319 56.4
Hund27128 Selenicereus undatus HOM05D005290 ORTHO05D006040 3.1e-87 326.2 325 55.4
Hund27133 Selenicereus undatus HOM05D005290 ORTHO05D006040 3.1e-87 326.2 325 55.4
Eucgr.F02988 Eucalyptus grandis HOM05D005290 ORTHO05D006040 5.9e-86 322.0 323 55.4
Prupe.1G555900 Prunus persica HOM05D005290 ORTHO05D006040 1.0e-85 321.2 326 54.9
Atru.chr13.2376 Acer truncatum HOM05D005290 ORTHO05D006040 2.9e-85 319.7 328 54.9
Potri.019G078700 Populus trichocarpa HOM05D005290 ORTHO05D006040 6.5e-85 318.5 333 53.8
CiPaw.07G235300 Carya illinoinensis HOM05D005290 ORTHO05D006040 2.5e-84 316.6 326 54.9
COL.COLO4_24646 Corchorus olitorius HOM05D005290 ORTHO05D006040 2.5e-84 316.6 342 54.1
Manes.02G198901 Manihot esculenta HOM05D005290 ORTHO05D006040 2.5e-84 316.6 320 55.0
RcHm_v2.0_Chr3g0494621 Rosa chinensis HOM05D005290 ORTHO05D006040 4.2e-84 315.8 332 53.9
Migut.C01329 Erythranthe guttata HOM05D005290 ORTHO05D006040 5.5e-84 315.5 324 57.7
RcHm_v2.0_Chr7g0226931 Rosa chinensis HOM05D005290 ORTHO05D006040 9.4e-84 314.7 330 53.9
Sabra19G0089500 Salix brachista HOM05D005290 ORTHO05D006040 9.4e-84 314.7 332 53.9
MSTRG.25478 Avicennia marina HOM05D005290 ORTHO05D006040 1.6e-83 313.9 325 55.1
FAN04G2711 Fragaria x ananassa HOM05D005290 ORTHO05D006040 1.6e-83 313.9 330 54.2
FvH4_5g31560 Fragaria vesca HOM05D005290 ORTHO05D006040 8.0e-83 311.6 330 53.9
FAN18G4563 Fragaria x ananassa HOM05D005290 ORTHO05D006040 8.0e-83 311.6 330 53.9
Ciclev10019018m.g Citrus clementina HOM05D005290 ORTHO05D006040 1.0e-82 311.2 321 53.9
AUR62004596 Chenopodium quinoa HOM05D005290 ORTHO05D006040 1.4e-82 310.8 321 54.5
Gorai.013G137700 Gossypium raimondii HOM05D005290 ORTHO05D006040 4.0e-82 309.3 323 55.1
Gohir.A13G118900 Gossypium hirsutum HOM05D005290 ORTHO05D006040 5.2e-82 308.9 322 55.6
Rhsim12G0006000 Rhododendron simsii HOM05D005290 ORTHO05D006040 6.7e-82 308.5 396 49.2
Cpa.g.sc50.56 Carica papaya HOM05D005290 ORTHO05D006040 8.8e-82 308.1 321 55.1
Sc01g0002020 Simmondsia chinensis HOM05D005290 ORTHO05D006040 8.8e-82 308.1 324 54.6
arahy.Tifrunner.gnm1.ann1.QF83TB Arachis hypogaea HOM05D005290 ORTHO05D006040 2.0e-81 307.0 319 52.4
MD12G1033300 Malus domestica HOM05D005290 ORTHO05D006040 2.6e-81 306.6 330 53.6
Ah.05g178620 Amaranthus hybridus HOM05D005290 ORTHO05D006040 5.7e-81 305.4 329 53.5
CANSAT80G2649 Cannabis sativa HOM05D005290 ORTHO05D006040 5.7e-81 305.4 320 54.4
Lj3g0002821 Lotus japonicus HOM05D005290 ORTHO05D006040 5.7e-81 305.4 319 52.0
arahy.Tifrunner.gnm1.ann1.0B02IH Arachis hypogaea HOM05D005290 ORTHO05D006040 1.7e-80 303.9 327 51.1
Gohir.D13G122700 Gossypium hirsutum HOM05D005290 ORTHO05D006040 1.7e-80 303.9 345 51.9
Aqoxy6G00108 Aquilegia oxysepala HOM05D005290 ORTHO05D006040 2.8e-80 303.1 327 52.6
SGA_v2.0_scaffold118G32566 Striga asiatica HOM05D005290 ORTHO05D006040 2.8e-80 303.1 322 54.0
TWI59G0173 Tripterygium wilfordii HOM05D005290 ORTHO05D006040 3.7e-80 302.8 327 52.9
Nitab4.5_0008566g0030 Nicotiana tabacum HOM05D005290 ORTHO05D006040 4.8e-80 302.4 323 54.8
Lalb_Chr07g0189291 Lupinus albus HOM05D005290 ORTHO05D006040 6.3e-80 302.0 318 50.3
Cc10_g09470 Coffea canephora HOM05D005290 ORTHO05D006040 1.1e-79 301.2 317 54.9
Nn1g08422 Nelumbo nucifera HOM05D005290 ORTHO05D006040 1.8e-79 300.4 321 52.3
MBI03_g18676_MAGBIO Magnolia biondii HOM05D005290 ORTHO05D006040 5.3e-79 298.9 319 51.7
BcaC01g04730 Brassica carinata HOM05D005290 ORTHO05D006040 1.2e-78 297.7 307 53.7
Glyma.04G254900 Glycine max HOM05D005290 ORTHO05D006040 1.2e-78 297.7 320 50.9
Solyc04g045660.4 Solanum lycopersicum HOM05D005290 ORTHO05D006040 1.6e-78 297.4 331 52.6
CAN.G982.5 Capsicum annuum HOM05D005290 ORTHO05D006040 2.7e-78 296.6 322 54.3
Sopen04g017660 Solanum pennellii HOM05D005290 ORTHO05D006040 2.7e-78 296.6 328 53.0
Lsat_1_v5_gn_1_31200 Lactuca sativa HOM05D005290 ORTHO05D006040 3.5e-78 296.2 328 51.8
Thhalv10028465m.g Eutrema salsugineum HOM05D005290 ORTHO05D006040 4.5e-78 295.8 315 52.4
VMungo1080G0256 Vigna mungo HOM05D005290 ORTHO05D006040 4.5e-78 295.8 320 52.2
EL10Ac1g00141 Beta vulgaris HOM05D005290 ORTHO05D006040 1.3e-77 294.3 325 51.7
Nitab4.5_0006434g0010 Nicotiana tabacum HOM05D005290 ORTHO05D006040 1.3e-77 294.3 322 54.0
Aa31LG9G14750 Aethionema arabicum HOM05D005290 ORTHO05D006040 2.9e-77 293.1 314 51.3
Sed0025467 Sechium edule HOM05D005290 ORTHO05D006040 2.9e-77 293.1 324 50.6
A03p28460 Brassica napus HOM05D005290 ORTHO05D006040 3.8e-77 292.7 319 51.7
BraA03t12051Z Brassica rapa HOM05D005290 ORTHO05D006040 3.8e-77 292.7 319 51.7
AT4G09140 Arabidopsis thaliana HOM05D005290 ORTHO05D006040 5.0e-77 292.4 320 51.6
Phvul.005G002000 Phaseolus vulgaris HOM05D005290 ORTHO05D006040 6.5e-77 292.0 319 51.1
HanXRQChr09g0266431 Helianthus annuus HOM05D005290 ORTHO05D006040 8.5e-77 291.6 313 55.3
TPR.G25526 Trifolium pratense HOM05D005290 ORTHO05D006040 8.5e-77 291.6 320 50.3
SalBow7G4073 Salvia bowleyana HOM05D005290 ORTHO05D006040 1.5e-76 290.8 316 53.2
CARHR260140 Cardamine hirsuta HOM05D005290 ORTHO05D006040 1.9e-76 290.4 319 52.0
AL6G42870 Arabidopsis lyrata HOM05D005290 ORTHO05D006040 2.5e-76 290.0 315 51.7
Ca_13983_v3 Cicer arietinum L. HOM05D005290 ORTHO05D006040 2.5e-76 290.0 321 49.8
C03p34390 Brassica napus HOM05D005290 ORTHO05D006040 3.2e-76 289.7 318 51.9
BolC3t15749H Brassica oleracea HOM05D005290 ORTHO05D006040 3.2e-76 289.7 318 51.9
Carub.0006s2769 Capsella rubella HOM05D005290 ORTHO05D006040 3.2e-76 289.7 319 50.8
BcaB01g02803 Brassica carinata HOM05D005290 ORTHO05D006040 5.5e-76 288.9 318 51.6
CsaV3_6G002720 Cucumis sativus L. HOM05D005290 ORTHO05D006040 7.2e-76 288.5 316 51.3
Sp6g08400 Schrenkiella parvula HOM05D005290 ORTHO05D006040 1.4e-74 284.3 317 51.4
Medtr3g005810 Medicago truncatula HOM05D005290 ORTHO05D006040 3.0e-74 283.1 321 48.6
MELO3C025009.2 Cucumis melo HOM05D005290 ORTHO05D006040 5.2e-74 282.3 320 50.6
PSO170G3966 Papaver somniferum HOM05D005290 ORTHO05D006040 6.8e-74 282.0 323 49.8
ECA232G1421 Erigeron canadensis HOM05D005290 ORTHO05D006040 2.0e-73 280.4 307 52.4
PSO782G1799 Papaver somniferum HOM05D005290 ORTHO05D006040 2.2e-72 276.9 323 49.2
ATR1136G152 Amborella trichopoda HOM05D005290 ORTHO05D006040 5.9e-70 268.9 318 48.4
PGR042G0738 Punica granatum HOM05D005290 ORTHO05D006040 1.0e-69 268.1 325 48.3
Lj7C285G2 Lonicera japonica HOM05D005290 ORTHO05D006040 6.5e-69 265.4 319 51.1
SHI12388 Sapria himalayana HOM05D005290 ORTHO05D006040 1.0e-66 258.1 319 48.3
Oeu059199.1 Olea europaea HOM05D005290 ORTHO05D006040 1.2e-65 254.6 272 53.7
SEGI_07557 Sequoiadendron giganteum HOM05D005290 ORTHO05D006040 1.9e-60 237.3 311 45.0
AagrBONN_evm.TU.Sc2ySwM_344.4012 Anthoceros agrestis HOM05D005290 ORTHO05D006040 7.3e-60 235.3 319 43.9
Lalb_Chr18g0049141 Lupinus albus HOM05D005290 ORTHO05D006040 2.8e-59 233.4 323 41.8
AUR62023548 Chenopodium quinoa HOM05D005290 ORTHO05D006040 4.4e-57 226.1 308 45.5
Os01g0958900 Oryza sativa ssp. japonica HOM05D005290 ORTHO05D006040 4.4e-57 226.1 318 42.1
Zm00001eb362590 Zea mays HOM05D005290 ORTHO05D006040 4.4e-57 226.1 317 42.0
Cfa012974 Carpinus fangiana HOM05D005290 ORTHO05D006040 1.7e-56 224.2 174 66.7
Psat1g008120 Pisum sativum HOM05D005290 ORTHO05D006040 1.1e-55 221.5 308 42.5
Peaxi162Scf00076g10023 Petunia axillaris HOM05D005290 ORTHO05D006040 6.0e-54 215.7 263 47.9
Mapoly0086s0067 Marchantia polymorpha HOM05D005290 ORTHO05D006040 1.7e-53 214.2 326 41.7
Pp3c10_9000 Physcomitrium patens HOM05D005290 ORTHO05D006040 5.6e-52 209.1 319 41.7
ClCG08G002460 Citrullus lanatus HOM05D005290 ORTHO05D006040 8.0e-51 205.3 172 63.4
Sed0027029 Sechium edule HOM05D005290 ORTHO05D006040 2.4e-47 193.7 276 42.8
HPP92_004622 Vanilla planifolia HOM05D005290 ORTHO05D006040 5.0e-45 186.0 169 55.6
unitig_26.g9865 Utricularia gibba HOM05D005290 ORTHO05D006040 3.6e-43 179.9 308 40.6
CDE02G0285 Ceratophyllum demersum HOM05D005290 ORTHO05D006040 1.1e-42 178.3 242 44.6
Lsat_1_v5_gn_1_32860 Lactuca sativa HOM05D005290 ORTHO05D006040 1.8e-42 177.6 168 56.0
CBR_g11107 Chara braunii HOM05D005290 ORTHO05D006040 2.2e-40 170.6 267 38.6
SMO340G0005 Selaginella moellendorffii HOM05D005290 ORTHO05D006040 3.2e-39 166.8 304 35.9
Sed0005919 Sechium edule HOM05D005290 ORTHO05D006040 8.1e-35 152.1 196 44.9
CDE02G3660 Ceratophyllum demersum HOM05D005290 ORTHO05D006040 5.8e-33 146.0 179 49.2
Haze_21326 Corylus avellana HOM05D005290 ORTHO05D006040 3.2e-23 113.6 95 57.9
PRCOL_00005034 Prasinoderma coloniale HOM05D005290 ORTHO05D006040 1.1e-20 105.1 329 28.0
ClCG08G002450 Citrullus lanatus HOM05D005290 ORTHO05D006040 1.9e-20 104.4 91 57.1
HPP92_004621 Vanilla planifolia HOM05D005290 ORTHO05D006040 9.0e-18 95.5 92 48.9
Lsat_1_v5_gn_8_103720 Lactuca sativa HOM05D005290 ORTHO05D006040 2.2e-16 90.9 134 41.8
PGSC0003DMG402015043 Solanum tuberosum HOM05D005290 ORTHO05D006040 2.7e-14 84.0 118 46.6
MCO16G484 Micromonas commoda HOM05D005290 ORTHO05D006040 1.5e-12 78.2 242 28.5
MD14G1034100 Malus domestica HOM05D005290 ORTHO05D006040 4.3e-12 76.6 198 31.3
Glyma.19G059900 Glycine max HOM05D005290 ORTHO05D006040 8.1e-11 72.4 49 71.4
Oeu042240.1 Olea europaea HOM05D005290 ORTHO05D006040 2.6e-09 67.4 54 63.0
DCAR_017435 Daucus carota HOM05D005290 ORTHO05D006040 3.4e-09 67.0 54 63.0
DCAR_017434 Daucus carota HOM05D005290 ORTHO05D006040 4.5e-09 66.6 32 81.2
Oeu006599.1 Olea europaea HOM05D005290 ORTHO05D006040 2.2e-08 64.3 34 76.5


User provided reference genes

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