Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016099 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 2.9e-85 318.5 162 100.0
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 1.2e-62 243.4 130 91.5
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 1.7e-61 239.6 130 91.5
GSVIVG01018721001 Vitis vinifera HOM05D001670 ORTHO05D002980 3.8e-61 238.4 130 90.0
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 6.5e-61 237.7 130 90.8
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 6.5e-61 237.7 130 90.8
Actinidia24999 Actinidia chinensis HOM05D001670 ORTHO05D002980 8.4e-61 237.3 130 90.0
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 8.4e-61 237.3 130 91.5
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 1.1e-60 236.9 130 91.5
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 1.1e-60 236.9 130 91.5
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 1.1e-60 236.9 130 91.5
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 2.5e-60 235.7 130 89.2
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 2.5e-60 235.7 130 90.8
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 2.5e-60 235.7 130 90.8
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 2.5e-60 235.7 130 90.8
Zm00001eb208290 Zea mays HOM05D001670 ORTHO05D002980 2.5e-60 235.7 132 86.4
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 3.2e-60 235.3 130 90.0
TAR374G0935 Trochodendron aralioides HOM05D001670 ORTHO05D002980 3.2e-60 235.3 130 90.0
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 4.2e-60 235.0 130 90.0
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 4.2e-60 235.0 130 89.2
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 4.2e-60 235.0 130 90.0
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 4.2e-60 235.0 130 90.0
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 4.2e-60 235.0 130 90.0
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 4.2e-60 235.0 130 89.2
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 5.5e-60 234.6 130 89.2
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 5.5e-60 234.6 130 89.2
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 5.5e-60 234.6 130 90.0
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 7.1e-60 234.2 130 90.0
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 9.3e-60 233.8 130 90.0
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 9.3e-60 233.8 130 89.2
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 1.2e-59 233.4 130 87.7
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 1.2e-59 233.4 130 90.0
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 1.2e-59 233.4 130 89.2
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 1.2e-59 233.4 130 89.2
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 2.1e-59 232.6 130 89.2
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 2.1e-59 232.6 130 89.2
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 2.1e-59 232.6 130 89.2
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 2.1e-59 232.6 130 89.2
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 2.1e-59 232.6 130 89.2
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 2.7e-59 232.3 130 89.2
Gohir.D11G082400 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.7e-59 232.3 130 88.5
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 2.7e-59 232.3 130 88.5
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 2.7e-59 232.3 130 90.0
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 2.7e-59 232.3 130 86.2
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 3.5e-59 231.9 129 89.1
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 3.5e-59 231.9 130 88.5
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 4.6e-59 231.5 130 88.5
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 4.6e-59 231.5 130 88.5
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 4.6e-59 231.5 130 88.5
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 4.6e-59 231.5 130 87.7
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 4.6e-59 231.5 130 88.5
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 4.6e-59 231.5 129 87.6
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 6.0e-59 231.1 130 87.7
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 7.9e-59 230.7 130 88.5
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 7.9e-59 230.7 130 89.2
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 1.0e-58 230.3 130 86.9
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.0e-58 230.3 130 86.9
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.0e-58 230.3 130 86.9
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.0e-58 230.3 130 86.9
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 1.3e-58 229.9 130 88.5
Haze_02722 Corylus avellana HOM05D001670 ORTHO05D002980 1.3e-58 229.9 130 88.5
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.3e-58 229.9 130 87.7
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 1.3e-58 229.9 130 86.9
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 1.3e-58 229.9 129 89.9
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 1.8e-58 229.6 130 86.2
Zm00001eb177620 Zea mays HOM05D001670 ORTHO05D002980 1.8e-58 229.6 130 86.2
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 1.8e-58 229.6 130 84.6
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 2.3e-58 229.2 130 86.9
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 2.3e-58 229.2 130 86.9
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 2.3e-58 229.2 130 88.5
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 3.0e-58 228.8 130 86.2
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 3.0e-58 228.8 130 86.2
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 3.0e-58 228.8 130 89.2
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 3.0e-58 228.8 130 89.2
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 3.9e-58 228.4 130 86.2
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 3.9e-58 228.4 130 84.6
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 5.1e-58 228.0 130 87.7
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 5.1e-58 228.0 129 88.4
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 5.1e-58 228.0 130 86.9
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 5.1e-58 228.0 129 86.8
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 6.7e-58 227.6 130 86.9
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 8.7e-58 227.3 130 86.2
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 8.7e-58 227.3 129 86.0
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 8.7e-58 227.3 129 86.0
Hma1.2p1_0341F.1_g130250 Hydrangea macrophylla HOM05D001670 ORTHO05D002980 1.5e-57 226.5 130 85.4
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 1.5e-57 226.5 130 86.2
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 1.5e-57 226.5 129 87.6
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 1.5e-57 226.5 129 87.6
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 1.5e-57 226.5 129 87.6
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 1.9e-57 226.1 130 86.9
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 2.5e-57 225.7 130 87.7
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 4.3e-57 224.9 130 86.9
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 5.7e-57 224.6 130 85.4
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 5.7e-57 224.6 130 86.2
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 7.4e-57 224.2 129 85.3
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 1.3e-56 223.4 130 84.6
Oeu064574.1 Olea europaea HOM05D001670 ORTHO05D002980 1.3e-56 223.4 129 86.8
Thecc.03G154200 Theobroma cacao HOM05D001670 ORTHO05D002980 1.3e-56 223.4 130 82.3
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 4.8e-56 221.5 130 84.6
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 6.3e-56 221.1 130 83.8
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 8.2e-56 220.7 130 82.3
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 1.8e-55 219.5 130 83.1
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 2.4e-55 219.2 130 83.8
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 2.4e-55 219.2 130 83.8
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 2.4e-55 219.2 130 83.8
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 2.4e-55 219.2 130 83.8
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 2.4e-55 219.2 130 83.8
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 4.1e-55 218.4 130 81.5
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 6.9e-55 217.6 130 83.1
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 6.9e-55 217.6 130 83.1
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 9.0e-55 217.2 130 83.1
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 9.0e-55 217.2 130 83.1
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 9.0e-55 217.2 130 83.1
BcaNung05287 Brassica carinata HOM05D001670 ORTHO05D002980 9.0e-55 217.2 130 83.1
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 9.0e-55 217.2 130 83.1
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 9.0e-55 217.2 130 83.1
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 9.0e-55 217.2 130 83.1
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 9.0e-55 217.2 130 81.5
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 1.2e-54 216.9 130 81.5
PSO017G3667 Papaver somniferum HOM05D001670 ORTHO05D002980 1.2e-54 216.9 130 81.5
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 1.5e-54 216.5 130 83.1
A09p69240 Brassica napus HOM05D001670 ORTHO05D002980 1.5e-54 216.5 130 82.3
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 1.5e-54 216.5 130 82.3
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 2.0e-54 216.1 130 82.3
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 2.0e-54 216.1 130 82.3
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 2.0e-54 216.1 130 83.8
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 2.6e-54 215.7 130 83.1
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 2.6e-54 215.7 131 82.4
CBR_g37673 Chara braunii HOM05D001670 ORTHO05D002980 3.4e-54 215.3 130 80.0
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 3.4e-54 215.3 130 82.3
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 7.6e-54 214.2 130 81.5
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 1.3e-53 213.4 130 83.1
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 1.7e-53 213.0 130 78.5
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 2.2e-53 212.6 129 82.9
SMO340G0305 Selaginella moellendorffii HOM05D001670 ORTHO05D002980 8.4e-53 210.7 129 79.1
Lj7C538G19 Lonicera japonica HOM05D001670 ORTHO05D002980 1.4e-52 209.9 130 78.5
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 1.9e-52 209.5 130 83.1
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 1.9e-52 209.5 130 80.8
Zm00001eb131800 Zea mays HOM05D001670 ORTHO05D002980 1.2e-51 206.8 117 84.6
BolC9t52941H Brassica oleracea HOM05D001670 ORTHO05D002980 3.5e-51 205.3 130 78.5
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 4.6e-51 204.9 130 77.7
BraA09t35680Z Brassica rapa HOM05D001670 ORTHO05D002980 1.0e-50 203.8 130 77.7
Cpa.g.sc914.1 Carica papaya HOM05D001670 ORTHO05D002980 1.0e-50 203.8 119 85.7
CARHR248060 Cardamine hirsuta HOM05D001670 ORTHO05D002980 3.9e-50 201.8 130 76.2
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 6.7e-50 201.1 130 75.4
Lsat_1_v5_gn_4_44320 Lactuca sativa HOM05D001670 ORTHO05D002980 3.7e-48 195.3 130 73.1
Ah.05g173600 Amaranthus hybridus HOM05D001670 ORTHO05D002980 6.3e-48 194.5 130 74.6
MBI02_g40780_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D012267 6.3e-48 194.5 112 83.9
Pp3c6_26730 Physcomitrium patens HOM05D001670 ORTHO05D002980 6.3e-48 194.5 130 73.8
BcaC04g24208 Brassica carinata HOM05D001670 ORTHO05D002980 5.3e-47 191.4 155 65.8
C09p00060 Brassica napus HOM05D001670 ORTHO05D002980 1.5e-46 189.9 155 65.2
CDE11G1021 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 1.5e-46 189.9 107 88.8
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 3.4e-46 188.7 130 76.9
AagrBONN_evm.TU.Sc2ySwM_362.1757 Anthoceros agrestis HOM05D001670 ORTHO05D002980 1.6e-43 179.9 130 63.8
Zm00001eb038330 Zea mays HOM05D001670 ORTHO05D002980 1.6e-43 179.9 102 85.3
Zm00001eb235140 Zea mays HOM05D001670 ORTHO05D002980 7.9e-43 177.6 101 86.1
HanXRQChr16g0519701 Helianthus annuus HOM05D001670 ORTHO05D002980 1.8e-42 176.4 159 59.1
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 2.5e-41 172.6 130 71.5
Zm00001eb306860 Zea mays HOM05D001670 ORTHO05D006093 6.9e-39 164.5 130 64.6
AUR62004150 Chenopodium quinoa HOM05D001670 ORTHO05D002980 2.5e-36 156.0 93 83.9
AUR62013711 Chenopodium quinoa HOM05D001670 ORTHO05D002980 2.5e-36 156.0 93 83.9
MBI02_g19788_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 5.5e-36 154.8 90 84.4
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.4e-34 150.2 130 63.1
PRCOL_00002164 Prasinoderma coloniale HOM05D001670 ORTHO05D002980 2.3e-34 149.4 127 57.5
MCO11G155 Micromonas commoda HOM05D001670 ORTHO05D002980 1.0e-29 134.0 130 53.1
Actinidia20636 Actinidia chinensis HOM05D001670 ORTHO05D006082 8.0e-27 124.4 76 86.8
Zm00001eb387200 Zea mays HOM05D001670 ORTHO05D002980 1.1e-25 120.6 66 81.8
Cre14.g632950 Chlamydomonas reinhardtii HOM05D001670 ORTHO05D002980 7.5e-25 117.9 130 44.6
Zm00001eb129840 Zea mays HOM05D001670 ORTHO05D006093 1.8e-23 113.2 108 56.5
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 2.4e-23 112.8 130 49.2
MBI06_g17804_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 2.4e-23 112.8 65 78.5
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 5.3e-23 111.7 130 48.5
Actinidia00123 Actinidia chinensis HOM05D022240 ORTHO05D002980 2.7e-19 99.4 125 50.4
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 1.8e-18 96.7 74 62.2
Haze_26936 Corylus avellana HOM05D001670 ORTHO05D002980 4.0e-18 95.5 134 37.3
SHI13578 Sapria himalayana HOM05D001670 ORTHO05D002980 2.8e-16 89.4 52 86.5
Cfa026075 Carpinus fangiana HOM05D001670 ORTHO05D002980 1.8e-15 86.7 127 36.2
MBI18_g42385_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 4.1e-15 85.5 60 73.3
Actinidia20646 Actinidia chinensis HOM05D001670 ORTHO05D010670 5.4e-15 85.1 52 82.7
Zm00001eb237010 Zea mays HOM05D001670 ORTHO05D005610 6.5e-13 78.2 48 81.2
Zm00001eb133400 Zea mays HOM05D013194 ORTHO05D015061 8.5e-13 77.8 47 83.0
BcaC07g41470 Brassica carinata HOM05D001670 ORTHO05D038644 4.0e-10 68.9 117 35.9
AL6G19030 Arabidopsis lyrata HOM05D001670 ORTHO05D038644 6.8e-10 68.2 137 37.2
MBI06_g17057_MAGBIO Magnolia biondii HOM05D000255 ORTHO05D002980 4.5e-06 55.5 28 82.1


User provided reference genes

Program Settings