Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 2.0e-196 689.1 394 100.0
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.7e-168 596.3 371 82.2
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 8.6e-168 594.0 371 81.9
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 2.0e-164 582.8 371 81.1
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 5.1e-160 568.2 371 78.7
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 4.7e-158 561.6 371 76.5
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 6.2e-158 561.2 371 76.8
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 1.1e-157 560.5 371 77.1
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 3.1e-157 558.9 371 77.1
GSVIVG01023813001 Vitis vinifera HOM05D003708 ORTHO05D004452 3.1e-157 558.9 371 77.1
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 6.9e-157 557.8 371 75.5
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.2e-156 557.0 371 75.5
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 1.2e-156 557.0 389 75.1
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 2.0e-156 556.2 371 75.7
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 2.0e-156 556.2 371 76.8
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.6e-156 555.8 371 77.6
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 3.4e-156 555.4 371 75.2
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 3.4e-156 555.4 371 75.2
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 4.4e-156 555.1 370 76.5
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 5.8e-156 554.7 371 76.3
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 9.9e-156 553.9 371 75.7
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 1.3e-155 553.5 371 75.5
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 1.3e-155 553.5 371 75.7
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 1.7e-155 553.1 371 75.2
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 2.2e-155 552.7 371 75.2
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 2.2e-155 552.7 371 75.2
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 2.2e-155 552.7 371 76.0
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 2.9e-155 552.4 371 75.7
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 3.8e-155 552.0 376 74.7
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 6.4e-155 551.2 371 76.0
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 6.4e-155 551.2 371 75.7
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 6.4e-155 551.2 371 75.5
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 8.4e-155 550.8 371 75.5
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 1.4e-154 550.1 371 75.2
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 3.2e-154 548.9 371 74.9
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 7.1e-154 547.7 371 75.5
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 9.3e-154 547.4 371 75.2
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 1.2e-153 547.0 371 74.9
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 1.6e-153 546.6 372 75.0
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 4.6e-153 545.0 371 74.4
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 4.6e-153 545.0 371 74.4
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 6.0e-153 544.7 371 74.7
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 6.0e-153 544.7 371 74.4
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 7.8e-153 544.3 371 74.7
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 7.8e-153 544.3 371 74.4
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 7.8e-153 544.3 371 74.4
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 7.8e-153 544.3 371 74.4
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 7.8e-153 544.3 371 74.4
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 7.8e-153 544.3 372 74.2
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 1.3e-152 543.5 371 73.9
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 1.3e-152 543.5 371 74.7
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 1.7e-152 543.1 371 74.7
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 2.3e-152 542.7 371 74.1
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 2.3e-152 542.7 371 74.4
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 2.3e-152 542.7 371 74.4
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 3.0e-152 542.3 371 74.1
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 3.9e-152 542.0 371 73.9
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 3.9e-152 542.0 371 74.9
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 3.9e-152 542.0 371 74.1
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 5.1e-152 541.6 371 73.9
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 5.1e-152 541.6 371 73.9
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 5.1e-152 541.6 371 73.9
Cc02_g17290 Coffea canephora HOM05D003708 ORTHO05D004452 5.1e-152 541.6 371 74.4
PGR042G2933 Punica granatum HOM05D003708 ORTHO05D004452 6.6e-152 541.2 371 74.7
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 8.7e-152 540.8 371 73.0
Nn5g29691 Nelumbo nucifera HOM05D003708 ORTHO05D004452 8.7e-152 540.8 371 74.7
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 1.1e-151 540.4 371 74.1
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 1.5e-151 540.0 371 73.0
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 1.5e-151 540.0 371 73.3
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 1.9e-151 539.7 371 73.9
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 1.9e-151 539.7 371 73.6
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 1.9e-151 539.7 371 73.3
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 1.9e-151 539.7 371 73.9
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 1.9e-151 539.7 371 73.6
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 3.3e-151 538.9 371 73.3
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 3.3e-151 538.9 371 73.6
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 3.3e-151 538.9 371 73.9
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 3.3e-151 538.9 371 73.9
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 3.3e-151 538.9 371 74.9
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 4.3e-151 538.5 371 72.5
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 5.6e-151 538.1 371 73.6
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 5.6e-151 538.1 371 73.9
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 5.6e-151 538.1 371 73.0
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 7.3e-151 537.7 365 76.2
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 7.3e-151 537.7 371 73.6
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 9.6e-151 537.3 371 72.2
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 2.8e-150 535.8 371 73.3
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 2.8e-150 535.8 371 72.5
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 2.8e-150 535.8 371 71.4
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 2.8e-150 535.8 371 73.3
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 3.6e-150 535.4 371 73.3
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 4.8e-150 535.0 371 73.3
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 6.2e-150 534.6 371 73.0
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 8.1e-150 534.3 377 72.7
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 1.8e-149 533.1 416 68.0
TPR.G10514 Trifolium pratense HOM05D003708 ORTHO05D004452 1.8e-149 533.1 371 73.0
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 3.1e-149 532.3 370 72.7
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 3.1e-149 532.3 371 72.8
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 6.9e-149 531.2 381 72.2
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 6.9e-149 531.2 371 72.5
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 9.0e-149 530.8 411 68.4
ECA246G0885 Erigeron canadensis HOM05D003708 ORTHO05D004452 9.0e-149 530.8 371 72.5
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 1.2e-148 530.4 371 72.2
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 2.6e-148 529.3 371 72.5
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 2.6e-148 529.3 371 72.5
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 9.9e-148 527.3 383 71.0
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 2.2e-147 526.2 383 70.8
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 3.8e-147 525.4 383 70.8
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.4e-146 523.5 383 70.5
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 3.2e-146 522.3 371 72.0
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 4.6e-145 518.5 371 71.4
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 7.9e-145 517.7 371 72.2
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 1.0e-144 517.3 368 72.3
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 6.7e-144 514.6 371 71.7
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 2.5e-143 512.7 339 76.4
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 3.3e-143 512.3 369 72.1
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 1.6e-142 510.0 339 77.3
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 2.8e-142 509.2 370 73.2
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 3.7e-142 508.8 339 75.8
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 4.0e-141 505.4 371 68.2
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 5.3e-141 505.0 371 68.2
Os02g0440000 Oryza sativa ssp. japonica HOM05D003708 ORTHO05D004452 2.0e-140 503.1 371 68.2
BcaC04g19189 Brassica carinata HOM05D003708 ORTHO05D004452 1.4e-138 496.9 371 69.8
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 1.8e-136 490.0 371 66.0
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 7.4e-135 484.6 371 69.3
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 1.8e-133 479.9 371 65.2
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 1.1e-127 460.7 372 62.6
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 1.1e-127 460.7 372 62.6
Pp3c23_16600 Physcomitrium patens HOM05D003708 ORTHO05D004452 7.4e-127 458.0 372 62.6
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 3.4e-124 449.1 371 61.2
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 4.5e-124 448.7 365 64.4
Cpa.g.sc106.13 Carica papaya HOM05D003708 ORTHO05D004452 1.4e-122 443.7 314 72.0
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 2.0e-116 423.3 366 64.5
TAR628G0623 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.6e-116 422.9 369 63.4
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 4.7e-113 412.1 370 61.1
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 1.7e-107 393.7 355 61.4
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 1.4e-106 390.6 369 56.1
BcaB01g05446 Brassica carinata HOM05D003708 ORTHO05D004452 4.2e-106 389.0 274 72.3
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 3.0e-104 382.9 281 68.3
TAR636G0705 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.4e-101 374.0 213 87.8
TAR381G0003 Trochodendron aralioides HOM05D003708 ORTHO05D004452 5.9e-100 368.6 213 87.3
SEGI_14006 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 3.2e-90 336.3 213 76.1
SEGI_30541 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 1.1e-85 321.2 203 76.4
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 7.0e-85 318.5 301 58.5
SEGI_13472 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 2.3e-80 303.5 203 73.9
Hund00244 Selenicereus undatus HOM05D003708 ORTHO05D004452 9.8e-79 298.1 423 47.3
Dinv42045 Davidia involucrata HOM05D003708 ORTHO05D004452 1.3e-78 297.7 218 70.6
CDE11G0056 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 9.8e-71 271.6 236 60.2
CBR_g46280 Chara braunii HOM05D003708 ORTHO05D004452 5.0e-59 232.6 221 55.7
Lj6C687T4 Lonicera japonica HOM05D003708 ORTHO05D004452 4.7e-57 226.1 210 57.6
TAR628G0633 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.3e-56 223.8 364 42.6
GSVIVG01029866001 Vitis vinifera HOM05D003708 ORTHO05D004452 2.9e-54 216.9 264 49.2
CBR_g46282 Chara braunii HOM05D003708 ORTHO05D004452 7.1e-53 212.2 159 66.7
SEGI_12812 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 5.2e-48 196.1 108 84.3
SEGI_39868 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 1.2e-47 194.9 108 84.3
CSS0044853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 3.8e-46 189.9 109 87.2
Nitab4.5_0000308g0370 Nicotiana tabacum HOM05D003708 ORTHO05D004452 1.7e-43 181.0 110 80.9
Duzib268G1397 Durio zibethinus HOM05D003708 ORTHO05D004452 9.6e-42 175.3 101 82.2
vmacro02086 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 3.8e-38 163.3 279 41.6
Lj3C651T3 Lonicera japonica HOM05D003708 ORTHO05D004452 1.4e-37 161.4 108 74.1
Lj3C650T5 Lonicera japonica HOM05D003708 ORTHO05D004452 5.4e-37 159.5 107 72.9
Eucgr.D02438 Eucalyptus grandis HOM05D003708 ORTHO05D004452 3.5e-36 156.8 79 92.4
Glyma.10G053602 Glycine max HOM05D003708 ORTHO05D004452 1.0e-35 155.2 149 55.0
vmacro02085 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 2.5e-34 150.6 274 42.0
TAR628G0529 Trochodendron aralioides HOM05D003708 ORTHO05D004452 3.6e-33 146.7 365 34.8
TAR628G1665 Trochodendron aralioides HOM05D003708 ORTHO05D004452 3.1e-32 143.7 355 35.2
arahy.Tifrunner.gnm1.ann1.EPLA3D Arachis hypogaea HOM05D003708 ORTHO05D004452 4.5e-23 113.2 130 46.9
Peaxi162Scf00286g00237 Petunia axillaris HOM05D003708 ORTHO05D004452 7.6e-23 112.5 82 68.3
TAR383G0428 Trochodendron aralioides HOM05D003708 ORTHO05D004452 4.9e-22 109.8 109 53.2
Cpa.g.sc106.11 Carica papaya HOM05D003708 ORTHO05D004452 7.1e-21 105.9 58 82.8
VMungo0720G2093 Vigna mungo HOM05D003708 ORTHO05D004452 5.6e-18 96.3 51 84.3
CDE11G0718 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 1.1e-16 92.0 54 83.3
CANSAT25G3134 Cannabis sativa HOM05D003708 ORTHO05D004452 1.7e-14 84.7 46 87.0
PRCOL_00005267 Prasinoderma coloniale HOM05D003708 ORTHO05D004452 3.0e-11 73.9 199 31.7
VMungo1215G0191 Vigna mungo HOM05D000113 ORTHO05D005275 5.1e-11 73.2 37 91.9
Peaxi162Scf01320g00019 Petunia axillaris HOM05D000176 ORTHO05D000106 1.1e-10 72.0 47 68.1
MCO09G633 Micromonas commoda HOM05D003708 ORTHO05D004452 1.3e-09 68.6 207 33.8
vmacro01715 Vaccinium macrocarpon HOM05D003708 ORTHO05D426473 3.7e-09 67.0 65 60.0
arahy.Tifrunner.gnm1.ann1.UUKH7B Arachis hypogaea HOM05D003708 ORTHO05D000639 1.7e-06 58.2 100 36.0
Actinidia27884 Actinidia chinensis HOM05D003708 ORTHO05D053587 3.8e-06 57.0 50 62.0


User provided reference genes

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