Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 5.6e-237 823.9 428 100.0
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 5.1e-214 747.7 419 91.6
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 2.6e-210 735.3 419 89.5
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 8.4e-209 730.3 419 90.0
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 1.1e-208 729.9 420 89.8
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 2.4e-208 728.8 419 89.7
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 4.2e-208 728.0 419 89.0
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 9.3e-208 726.9 419 89.7
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.2e-207 726.5 418 88.8
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 1.2e-207 726.5 420 88.6
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 2.1e-207 725.7 419 88.8
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 4.6e-207 724.5 420 88.3
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 7.8e-207 723.8 421 89.1
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.0e-206 723.4 418 88.8
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 1.0e-206 723.4 419 89.0
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 1.3e-206 723.0 420 87.9
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.3e-206 723.0 420 87.6
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.3e-206 723.0 419 89.3
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 2.3e-206 722.2 421 88.6
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 3.0e-206 721.8 419 88.5
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 3.0e-206 721.8 418 89.5
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 5.1e-206 721.1 419 89.5
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 5.1e-206 721.1 421 87.6
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 6.6e-206 720.7 418 89.2
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 1.1e-205 719.9 419 88.1
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 1.5e-205 719.5 419 89.3
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 1.5e-205 719.5 420 87.6
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.5e-205 719.5 421 87.4
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 1.9e-205 719.2 418 88.8
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.9e-205 719.2 418 88.5
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 1.9e-205 719.2 420 87.4
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 1.9e-205 719.2 420 87.4
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 1.9e-205 719.2 420 87.4
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.5e-205 718.8 438 86.1
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 3.3e-205 718.4 418 88.3
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 4.3e-205 718.0 419 88.8
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 5.6e-205 717.6 419 87.4
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 5.6e-205 717.6 418 88.0
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 7.3e-205 717.2 420 86.9
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 7.3e-205 717.2 418 88.3
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 7.3e-205 717.2 419 88.5
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 7.3e-205 717.2 419 87.6
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 9.6e-205 716.8 419 89.3
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 9.6e-205 716.8 419 87.8
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 1.3e-204 716.5 419 87.6
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 1.6e-204 716.1 419 87.6
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.6e-204 716.1 427 87.1
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 2.1e-204 715.7 420 87.4
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 2.8e-204 715.3 419 88.3
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 2.8e-204 715.3 418 86.8
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 6.2e-204 714.1 419 86.6
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 6.2e-204 714.1 420 88.3
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 6.2e-204 714.1 419 87.1
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 8.1e-204 713.8 419 86.6
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.4e-203 713.0 435 84.8
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 1.4e-203 713.0 418 87.8
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 1.4e-203 713.0 419 88.5
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.8e-203 712.6 418 87.1
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 1.8e-203 712.6 419 87.4
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 3.1e-203 711.8 419 87.1
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 3.1e-203 711.8 418 87.8
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 3.1e-203 711.8 419 87.8
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 5.3e-203 711.1 421 86.9
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 6.9e-203 710.7 420 86.9
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 6.9e-203 710.7 419 86.9
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 1.5e-202 709.5 421 88.4
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 1.5e-202 709.5 419 87.6
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.5e-202 709.5 418 87.8
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.5e-202 709.5 418 86.8
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 2.0e-202 709.1 419 86.6
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 5.8e-202 707.6 421 86.2
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 7.6e-202 707.2 419 86.4
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 7.6e-202 707.2 419 86.4
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 7.6e-202 707.2 429 85.8
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 7.6e-202 707.2 437 83.8
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 1.3e-201 706.4 419 86.6
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 1.3e-201 706.4 419 86.4
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 2.9e-201 705.3 419 87.1
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 3.8e-201 704.9 448 84.4
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 6.4e-201 704.1 419 86.4
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 6.4e-201 704.1 418 87.3
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 1.1e-200 703.4 419 85.9
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 1.1e-200 703.4 471 79.8
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 1.1e-200 703.4 471 79.8
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 1.4e-200 703.0 419 86.2
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 1.9e-200 702.6 419 85.9
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 7.1e-200 700.7 419 85.9
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 7.1e-200 700.7 419 86.4
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 9.3e-200 700.3 419 85.7
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.2e-199 699.9 422 85.3
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 1.6e-199 699.5 419 85.4
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 2.1e-199 699.1 419 85.4
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 2.7e-199 698.7 421 85.7
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 2.7e-199 698.7 427 83.6
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 3.5e-199 698.4 419 85.7
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 4.6e-199 698.0 449 82.2
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 7.9e-199 697.2 419 85.4
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 7.9e-199 697.2 419 85.4
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 7.9e-199 697.2 419 85.4
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 1.3e-198 696.4 419 85.2
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.3e-198 696.4 425 84.2
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 2.3e-198 695.7 419 85.2
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 2.3e-198 695.7 418 84.7
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 6.7e-198 694.1 419 85.0
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 1.5e-197 693.0 417 85.1
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 1.5e-197 693.0 419 84.7
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 1.9e-197 692.6 419 85.0
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 3.3e-197 691.8 419 84.5
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 3.3e-197 691.8 419 84.5
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 9.6e-197 690.3 419 83.8
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.6e-196 689.5 419 85.4
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 2.1e-196 689.1 419 84.5
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 2.1e-196 689.1 419 84.2
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 2.8e-196 688.7 419 84.2
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 2.6e-194 682.2 419 82.8
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 2.9e-193 678.7 421 83.4
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 4.2e-192 674.9 424 81.1
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 6.0e-191 671.0 374 91.7
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 3.9e-190 668.3 470 77.4
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.5e-189 666.4 419 82.6
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 4.3e-189 664.8 502 72.1
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.0e-186 656.0 420 81.7
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.9e-185 652.1 415 81.2
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.9e-184 649.4 416 82.7
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 3.2e-184 648.7 387 86.0
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 2.5e-181 639.0 378 85.7
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 2.4e-179 632.5 363 89.5
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 3.1e-179 632.1 385 84.2
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 1.3e-177 626.7 372 86.3
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 1.1e-173 613.6 435 72.9
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 9.1e-171 604.0 404 77.2
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 1.7e-169 599.7 419 75.9
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 2.9e-169 599.0 417 73.9
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 4.4e-165 585.1 413 76.0
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 7.4e-165 584.3 334 89.5
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 3.5e-162 575.5 401 72.1
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 5.5e-160 568.2 309 94.5
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 1.6e-143 513.5 421 63.9
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 1.4e-142 510.4 395 65.6
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 2.4e-139 499.6 279 91.8
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 3.1e-139 499.2 397 64.5
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 9.5e-136 487.6 458 62.4
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.6e-135 486.9 286 86.0
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 8.3e-124 448.0 392 66.3
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 7.8e-122 441.4 260 86.2
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.2e-117 427.6 240 90.8
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 1.9e-107 393.7 236 83.9
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.2e-106 391.0 225 88.0
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.7e-97 360.5 244 76.6
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 3.9e-97 359.4 205 90.2
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 2.4e-83 313.5 287 64.8
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 1.1e-72 278.1 293 50.9
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 1.4e-67 261.2 207 67.6
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 1.2e-66 258.1 147 87.8
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 3.0e-57 226.9 188 60.1
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 8.8e-49 198.7 177 65.5
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 1.7e-47 194.5 134 72.4
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 3.2e-43 180.3 110 87.3
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 3.9e-41 173.3 119 72.3
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 3.1e-38 163.7 150 64.0
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 1.2e-37 161.8 288 36.5
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 1.2e-37 161.8 109 77.1
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 8.0e-34 149.1 156 57.7
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 2.3e-33 147.5 156 57.7
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 1.0e-28 132.1 82 80.5
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 7.2e-27 125.9 178 37.1
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 6.3e-23 112.8 149 49.7
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.6e-21 108.2 69 79.7
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 7.5e-16 89.4 50 90.0
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 2.9e-15 87.4 100 53.0
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 1.1e-11 75.5 46 84.8
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 9.5e-11 72.4 40 90.0
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 5.2e-09 66.6 37 86.5
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 4.4e-08 63.5 60 55.0
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 8.3e-07 59.3 113 33.6
Lalb_Chr21g0314031 Lupinus albus HOM05D004007 ORTHO05D239120 8.3e-07 59.3 34 79.4
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 1.1e-06 58.9 109 33.9
HanXRQChr15g0475161 Helianthus annuus HOM05D004007 ORTHO05D222506 1.4e-06 58.5 34 82.4
ECA234G3088 Erigeron canadensis HOM05D002061 ORTHO05D002849 3.2e-06 57.4 414 22.5
arahy.Tifrunner.gnm1.ann1.SHHZ9W Arachis hypogaea HOM05D002061 ORTHO05D002849 5.4e-06 56.6 414 23.9
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 7.0e-06 56.2 416 23.6
MELO3C010675.2 Cucumis melo HOM05D002061 ORTHO05D002849 9.2e-06 55.8 414 23.4
CsaV3_2G024770 Cucumis sativus L. HOM05D002061 ORTHO05D002849 9.2e-06 55.8 414 23.4


User provided reference genes

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