Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1530.0 756 100.0
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1489.9 809 92.6
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1261.5 810 77.5
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1236.5 810 76.0
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1216.4 812 75.4
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1212.6 813 75.4
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1211.4 813 75.5
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1211.1 813 75.4
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1210.7 813 74.2
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1209.5 812 74.6
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1209.1 812 73.9
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1205.7 812 74.5
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1205.7 812 73.6
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1200.3 811 74.8
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1199.9 811 74.4
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1198.7 811 74.0
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1198.7 916 69.2
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1198.3 811 74.4
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1198.3 811 74.5
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1197.2 811 73.6
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1196.4 812 73.8
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1194.9 810 74.0
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1194.5 812 74.3
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1193.7 811 74.0
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1193.3 813 73.3
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1192.6 812 73.5
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1187.6 812 73.0
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1186.4 812 73.3
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1185.6 811 72.5
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1185.2 816 73.3
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1183.7 811 72.3
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1183.7 813 73.9
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1183.7 800 74.0
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1183.3 816 73.0
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1183.3 811 72.7
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1182.9 810 73.7
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1182.9 786 75.3
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1182.2 809 73.4
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1181.4 813 73.2
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1181.4 811 72.5
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1179.1 812 73.3
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1178.3 812 72.9
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1177.5 816 73.0
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1176.8 810 73.0
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1176.0 811 72.0
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1172.5 810 72.8
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1172.1 819 72.5
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1171.8 813 72.0
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1171.0 813 73.3
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1169.8 802 73.1
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1169.1 812 71.7
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1166.8 808 71.2
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1166.8 823 72.1
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1165.6 967 64.9
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1164.8 809 71.6
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1162.9 811 71.6
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1161.7 810 71.9
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1161.0 810 71.7
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1159.8 807 71.3
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1159.4 808 71.3
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1157.5 811 70.4
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1155.2 811 72.3
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1151.7 813 71.3
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1149.0 810 71.9
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1147.1 888 65.9
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1142.9 825 69.6
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1137.9 808 70.2
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1137.5 807 70.8
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1135.6 813 70.0
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1131.7 871 67.0
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1130.9 812 70.8
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1130.9 774 73.8
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1124.0 810 69.0
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1122.1 810 68.9
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1122.1 828 69.9
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1120.9 811 68.4
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1120.5 812 68.6
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1117.8 811 68.2
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1115.9 811 68.2
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1115.5 811 68.9
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1115.1 812 68.3
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1112.4 816 68.1
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1111.3 811 67.6
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1109.4 811 67.9
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1109.0 807 68.5
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1108.6 811 67.4
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1108.6 811 67.4
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1107.4 812 67.7
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1105.5 811 67.4
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1104.7 812 67.4
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1102.8 814 68.8
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1101.7 812 67.4
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1100.1 810 69.5
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1097.0 813 67.7
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1096.6 808 68.4
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1092.4 810 68.8
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1082.4 809 68.2
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1080.9 867 63.4
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1080.1 856 64.5
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 2.3e-310 1068.5 806 65.8
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 6.9e-307 1057.0 813 65.3
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 9.0e-307 1056.6 811 65.5
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 8.4e-305 1050.0 813 64.6
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 7.9e-303 1043.5 825 66.1
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 1.9e-301 1038.9 786 68.4
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 7.4e-301 1036.9 770 67.5
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 1.6e-300 1035.8 813 67.5
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 2.4e-299 1031.9 964 58.7
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 2.5e-288 995.3 811 64.4
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 7.2e-280 967.2 814 59.8
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.5e-272 943.0 821 58.7
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 1.6e-271 939.5 606 77.7
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 2.1e-263 912.5 816 61.3
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 5.5e-256 887.9 805 56.8
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 5.7e-253 877.9 807 58.0
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.0e-217 760.8 783 55.0
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 7.2e-171 605.1 854 41.2
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 8.8e-153 545.0 779 43.4
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 7.5e-152 542.0 381 71.7
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 1.3e-148 531.2 837 38.4
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 3.2e-134 483.4 833 36.1
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 2.3e-132 477.2 937 32.6
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 1.8e-121 441.0 372 59.7
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 2.1e-101 374.4 351 57.8
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 8.4e-87 325.9 316 54.4
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 1.3e-82 312.0 172 87.8
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 2.6e-80 304.3 241 67.2
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 3.9e-76 290.4 244 59.4
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 2.1e-74 284.6 202 69.3
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 1.5e-64 251.9 629 31.2
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 5.1e-52 210.3 142 75.4
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 1.5e-38 165.6 194 53.6
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 1.9e-38 165.2 113 74.3
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 7.5e-35 153.3 270 39.3
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 7.5e-35 153.3 101 73.3
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.8e-33 148.7 95 76.8
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 1.1e-30 139.4 181 46.4
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 1.2e-29 136.0 75 85.3
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 1.8e-28 132.1 121 59.5
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 1.5e-27 129.0 191 42.9
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 4.4e-27 127.5 80 77.5
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 3.1e-25 121.3 122 54.9
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 1.5e-22 112.5 113 46.9
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 3.6e-21 107.8 115 53.0
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 4.7e-21 107.5 69 75.4
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 1.8e-20 105.5 263 29.7
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 1.8e-20 105.5 76 56.6
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 4.9e-18 97.4 145 47.6
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 4.6e-16 90.9 72 63.9
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 2.3e-15 88.6 149 40.9
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 2.8e-13 81.6 43 79.1
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 2.8e-13 81.6 59 69.5
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 6.2e-13 80.5 68 61.8
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 4.0e-12 77.8 80 58.8
Rhsim05G0038700 Rhododendron simsii HOM05D031300 ORTHO05D339751 1.9e-09 68.9 81 51.9
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 3.2e-09 68.2 60 50.0
BcaC02g07665 Brassica carinata HOM05D001091 ORTHO05D001020 1.0e-07 63.2 314 24.2
Nn8g40042 Nelumbo nucifera HOM05D004364 ORTHO05D006299 3.9e-07 61.2 34 79.4
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 8.6e-07 60.1 436 20.4
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 1.5e-06 59.3 37 75.7
Oeu019155.3 Olea europaea HOM05D003775 ORTHO05D004314 1.9e-06 58.9 274 25.9
BcaB06g28879 Brassica carinata HOM05D001091 ORTHO05D001020 2.5e-06 58.5 293 23.2


User provided reference genes

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