Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012833 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 0.0e+00 2491.8 1365 100.0
Actinidia19322 Actinidia chinensis HOM05D001734 ORTHO05D003483 0.0e+00 1770.7 1141 78.7
Dinv20652 Davidia involucrata HOM05D001734 ORTHO05D003483 0.0e+00 1722.2 1166 74.6
Rhsim08G0172200 Rhododendron simsii HOM05D001734 ORTHO05D003483 0.0e+00 1693.3 1180 73.2
GSVIVG01007755001 Vitis vinifera HOM05D001734 ORTHO05D003483 0.0e+00 1495.7 1167 64.9
Cfa019134 Carpinus fangiana HOM05D001734 ORTHO05D003483 0.0e+00 1484.9 1134 65.1
CiPaw.11G026100 Carya illinoinensis HOM05D001734 ORTHO05D003483 0.0e+00 1453.0 1133 63.8
QL10p011601 Quercus lobata HOM05D001734 ORTHO05D003483 0.0e+00 1417.9 1252 58.8
Atru.chr9.2479 Acer truncatum HOM05D001734 ORTHO05D003483 0.0e+00 1408.7 1174 61.0
Prupe.5G173600 Prunus persica HOM05D001734 ORTHO05D003483 0.0e+00 1378.6 1134 62.0
Cc04_g14140 Coffea canephora HOM05D001734 ORTHO05D003483 0.0e+00 1371.7 1161 60.1
Potri.015G076650 Populus trichocarpa HOM05D001734 ORTHO05D003483 0.0e+00 1365.5 1166 61.0
Ciclev10018427m.g Citrus clementina HOM05D001734 ORTHO05D003483 0.0e+00 1359.4 1166 60.0
MD06G1173700 Malus domestica HOM05D001734 ORTHO05D003483 0.0e+00 1350.9 1168 60.4
Thecc.03G012800 Theobroma cacao HOM05D001734 ORTHO05D003483 0.0e+00 1336.2 1134 60.8
Haze_07473 Corylus avellana HOM05D001734 ORTHO05D003483 0.0e+00 1335.1 1183 58.8
Manes.06G105000 Manihot esculenta HOM05D001734 ORTHO05D003483 0.0e+00 1316.6 1133 59.0
Sopen03g032020 Solanum pennellii HOM05D001734 ORTHO05D003483 0.0e+00 1313.5 1132 59.0
Oeu016387.4 Olea europaea HOM05D001734 ORTHO05D003483 0.0e+00 1312.4 1177 58.5
CANSAT80G1574 Cannabis sativa HOM05D001734 ORTHO05D003483 0.0e+00 1312.0 1168 58.8
Duzib084G0583 Durio zibethinus HOM05D001734 ORTHO05D003483 0.0e+00 1312.0 1181 58.8
Migut.I00009 Erythranthe guttata HOM05D001734 ORTHO05D003483 0.0e+00 1309.3 1182 55.8
Gorai.006G189100 Gossypium raimondii HOM05D001734 ORTHO05D003483 0.0e+00 1297.3 1167 57.9
Nn4g22757 Nelumbo nucifera HOM05D001734 ORTHO05D003483 0.0e+00 1295.8 1139 60.3
MSTRG.11455 Avicennia marina HOM05D001734 ORTHO05D003483 0.0e+00 1294.3 1164 56.5
Gohir.A09G171700 Gossypium hirsutum HOM05D001734 ORTHO05D003483 0.0e+00 1285.8 1167 57.5
RcHm_v2.0_Chr6g0271131 Rosa chinensis HOM05D001734 ORTHO05D003483 0.0e+00 1278.1 1168 57.3
PSO063G7150 Papaver somniferum HOM05D001734 ORTHO05D003483 0.0e+00 1276.5 1166 58.1
TWI14G0283 Tripterygium wilfordii HOM05D001734 ORTHO05D003483 0.0e+00 1273.1 1133 56.6
FvH4_2g11670 Fragaria vesca HOM05D001734 ORTHO05D003483 0.0e+00 1266.9 1171 56.6
SalBow5G1563 Salvia bowleyana HOM05D001734 ORTHO05D003483 0.0e+00 1266.9 1162 55.2
PSO063G0326 Papaver somniferum HOM05D001734 ORTHO05D003483 0.0e+00 1266.5 1173 56.9
FAN15G3378 Fragaria x ananassa HOM05D001734 ORTHO05D003483 0.0e+00 1250.7 1182 55.8
HanXRQChr02g0036361 Helianthus annuus HOM05D001734 ORTHO05D003483 0.0e+00 1233.4 1145 56.5
Sc04g0001800 Simmondsia chinensis HOM05D001734 ORTHO05D003483 0.0e+00 1224.5 1184 54.9
FAN24G1896 Fragaria x ananassa HOM05D001734 ORTHO05D003483 0.0e+00 1223.0 1168 55.6
Glyma.04G182900 Glycine max HOM05D001734 ORTHO05D003483 0.0e+00 1192.2 1165 53.7
Lsat_1_v5_gn_1_27061 Lactuca sativa HOM05D001734 ORTHO05D003483 0.0e+00 1188.3 1164 54.9
MELO3C017087.2 Cucumis melo HOM05D001734 ORTHO05D003483 0.0e+00 1185.6 1134 53.8
Medtr3g077860 Medicago truncatula HOM05D001734 ORTHO05D003483 0.0e+00 1184.9 1131 55.0
Lj1g0011912 Lotus japonicus HOM05D001734 ORTHO05D003483 0.0e+00 1177.2 1130 54.7
Peaxi162Scf00009g00112 Petunia axillaris HOM05D001734 ORTHO05D003483 0.0e+00 1177.2 1155 54.5
CsaV3_1G001470 Cucumis sativus L. HOM05D001734 ORTHO05D003483 0.0e+00 1174.5 1134 53.6
Sed0023277 Sechium edule HOM05D001734 ORTHO05D003483 0.0e+00 1173.3 1137 53.6
PGR044G0033 Punica granatum HOM05D001734 ORTHO05D003483 0.0e+00 1164.1 1168 53.2
Eucgr.K02842 Eucalyptus grandis HOM05D001734 ORTHO05D003483 0.0e+00 1162.1 1171 52.9
ECA247G1446 Erigeron canadensis HOM05D001734 ORTHO05D003483 0.0e+00 1158.3 1175 52.9
Phvul.009G178400 Phaseolus vulgaris HOM05D001734 ORTHO05D003483 0.0e+00 1157.9 1165 52.5
ClCG06G017040 Citrullus lanatus HOM05D001734 ORTHO05D003483 0.0e+00 1151.0 1150 52.3
Aqoxy3G02937 Aquilegia oxysepala HOM05D001734 ORTHO05D003483 0.0e+00 1149.8 1177 51.9
DCAR_026136 Daucus carota HOM05D001734 ORTHO05D003483 0.0e+00 1132.1 1166 52.9
AT3G48190 Arabidopsis thaliana HOM05D001734 ORTHO05D003483 0.0e+00 1125.9 1175 52.4
Carub.0005s1431 Capsella rubella HOM05D001734 ORTHO05D003483 0.0e+00 1119.0 1175 52.1
COL.COLO4_30039 Corchorus olitorius HOM05D001734 ORTHO05D003483 0.0e+00 1119.0 1167 52.8
arahy.Tifrunner.gnm1.ann1.2D0TBT Arachis hypogaea HOM05D001734 ORTHO05D003483 0.0e+00 1117.4 1228 49.2
AL5G27530 Arabidopsis lyrata HOM05D001734 ORTHO05D003483 0.0e+00 1110.1 1175 51.6
CARHR156920 Cardamine hirsuta HOM05D001734 ORTHO05D003483 0.0e+00 1110.1 1169 52.2
Aa31LG4G16790 Aethionema arabicum HOM05D001734 ORTHO05D003483 0.0e+00 1102.8 1205 50.6
A06p27460 Brassica napus HOM05D001734 ORTHO05D003483 0.0e+00 1100.1 1173 51.2
BraA06t25686Z Brassica rapa HOM05D001734 ORTHO05D003483 0.0e+00 1100.1 1173 51.2
C03p66700 Brassica napus HOM05D001734 ORTHO05D003483 0.0e+00 1097.0 1174 51.4
SGA_v2.0_scaffold90G27914 Striga asiatica HOM05D001734 ORTHO05D003483 0.0e+00 1087.0 1188 49.7
Thhalv10010050m.g Eutrema salsugineum HOM05D001734 ORTHO05D003483 0.0e+00 1082.8 1173 50.9
vmacro19388 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 0.0e+00 1079.7 780 72.1
THA.LOC104818218 Tarenaya hassleriana HOM05D001734 ORTHO05D003483 0.0e+00 1079.3 1184 49.6
BolC3t18938H Brassica oleracea HOM05D001734 ORTHO05D003483 0.0e+00 1077.0 1192 50.3
Rhsim08G0157900 Rhododendron simsii HOM05D001734 ORTHO05D003483 7.1e-294 1014.6 1058 56.3
EL10Ac5g10743 Beta vulgaris HOM05D001734 ORTHO05D003483 4.8e-274 948.7 1177 45.5
Lj9A448G32 Lonicera japonica HOM05D001734 ORTHO05D003483 2.4e-273 946.4 812 60.7
Sp5g13840 Schrenkiella parvula HOM05D001734 ORTHO05D003483 5.7e-243 845.5 980 48.7
Gohir.D09G167401 Gossypium hirsutum HOM05D001734 ORTHO05D003483 9.4e-238 828.2 831 53.5
Sabra15G0101700 Salix brachista HOM05D001734 ORTHO05D003483 3.7e-234 816.2 986 47.8
Os01g0106700 Oryza sativa ssp. japonica HOM05D001734 ORTHO05D003483 1.0e-231 808.1 1162 39.6
HPP92_004845 Vanilla planifolia HOM05D002152 ORTHO05D003483 1.3e-231 807.7 1146 40.6
TAR629G2960 Trochodendron aralioides HOM05D001734 ORTHO05D003483 1.0e-228 798.1 553 72.0
Zm00001eb126710 Zea mays HOM05D001734 ORTHO05D003483 1.3e-226 791.2 1176 38.6
Lalb_Chr08g0236501 Lupinus albus HOM05D001734 ORTHO05D003483 6.8e-220 768.8 810 51.1
Nitab4.5_0000785g0010 Nicotiana tabacum HOM05D001734 ORTHO05D003483 1.7e-202 711.1 669 55.2
Gohir.A09G171650 Gossypium hirsutum HOM05D001734 ORTHO05D003483 1.3e-186 658.3 510 64.3
FAN05G4580 Fragaria x ananassa HOM05D001734 ORTHO05D003483 2.8e-181 640.6 679 52.4
Hma1.2p1_0701F.1_g205860 Hydrangea macrophylla HOM05D001734 ORTHO05D003483 3.2e-169 600.5 514 61.5
CAN.G1305.19 Capsicum annuum HOM05D001734 ORTHO05D003483 4.6e-168 596.7 553 55.2
vmacro19389 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 1.3e-165 588.6 356 78.7
Nitab4.5_0000984g0090 Nicotiana tabacum HOM05D001734 ORTHO05D003483 3.7e-165 587.0 905 39.7
FAN05G0227 Fragaria x ananassa HOM05D001734 ORTHO05D003483 3.1e-164 583.9 454 63.0
CAN.G1305.20 Capsicum annuum HOM05D001734 ORTHO05D003483 1.6e-152 545.0 484 58.5
TPR.G6035 Trifolium pratense HOM05D001734 ORTHO05D003483 7.9e-152 542.7 700 46.0
Pp3c2_23700 Physcomitrium patens HOM05D001734 ORTHO05D003483 8.2e-149 532.7 1215 31.4
CDE07G1059 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 6.1e-144 516.5 926 37.0
VMungo1309G2093 Vigna mungo HOM05D001734 ORTHO05D003483 4.2e-137 493.8 625 45.4
Mapoly0081s0051 Marchantia polymorpha HOM05D001734 ORTHO05D003483 1.6e-128 465.3 1177 28.5
BcaNung06699 Brassica carinata HOM05D001734 ORTHO05D003483 1.0e-127 462.6 485 53.4
TPR.G6095 Trifolium pratense HOM05D001734 ORTHO05D003483 2.3e-127 461.5 380 60.0
ATR0730G231 Amborella trichopoda HOM05D001734 ORTHO05D003483 8.8e-127 459.5 671 41.4
Ca_16175_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 7.4e-126 456.4 326 66.9
AagrBONN_evm.TU.Sc2ySwM_117.1596 Anthoceros agrestis HOM05D001734 ORTHO05D003483 9.1e-116 422.9 1158 28.8
Lj9A448T39 Lonicera japonica HOM05D001734 ORTHO05D003483 4.0e-111 407.5 304 69.1
AUR62008208 Chenopodium quinoa HOM05D001734 ORTHO05D003483 1.2e-110 406.0 564 40.8
AUR62030960 Chenopodium quinoa HOM05D001734 ORTHO05D003483 3.1e-108 397.9 564 40.6
PSO732G0258 Papaver somniferum HOM05D001734 ORTHO05D003483 1.5e-105 389.0 271 69.4
VMungo1309G1926 Vigna mungo HOM05D000002 ORTHO05D000001 1.8e-103 382.1 384 52.3
Rhsim06G0125200 Rhododendron simsii HOM05D001734 ORTHO05D003483 3.1e-95 354.8 245 73.5
ATR0730G017 Amborella trichopoda HOM05D001734 ORTHO05D003483 7.3e-89 333.6 335 51.3
Cpa.g.sc1166.1 Carica papaya HOM05D001734 ORTHO05D003483 9.5e-89 333.2 240 67.5
Lalb_Chr08g0236521 Lupinus albus HOM05D001734 ORTHO05D003483 2.8e-88 331.6 275 62.5
Hund02745 Selenicereus undatus HOM05D001734 ORTHO05D003483 1.3e-85 322.8 240 67.1
Migut.C00312 Erythranthe guttata HOM05D001734 ORTHO05D003483 3.0e-82 311.6 259 60.6
SEGI_17988 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 1.4e-79 302.8 313 48.9
unitig_0.g1441 Utricularia gibba HOM05D001734 ORTHO05D003483 1.6e-75 289.3 858 27.6
Ca_16176_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 1.3e-74 286.2 353 44.8
Rhsim02G0151200 Rhododendron simsii HOM05D001734 ORTHO05D003483 2.3e-74 285.4 238 63.0
SHI17017 Sapria himalayana HOM05D001734 ORTHO05D003483 1.4e-71 276.2 233 61.8
Cpa.g.sc76.49 Carica papaya HOM05D001734 ORTHO05D003483 1.6e-59 236.1 292 46.9
CDE07G0247 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 2.1e-56 225.7 177 59.3
TPR.G29226 Trifolium pratense HOM05D001734 ORTHO05D003483 3.6e-56 224.9 183 62.3
Nitab4.5_0000984g0080 Nicotiana tabacum HOM05D001734 ORTHO05D003483 1.5e-49 203.0 211 49.8
Rhsim02G0102600 Rhododendron simsii HOM05D001734 ORTHO05D003483 4.3e-49 201.4 258 47.7
QL01p024072 Quercus lobata HOM05D001734 ORTHO05D020518 8.7e-42 177.2 534 29.0
arahy.Tifrunner.gnm1.ann1.BK2P93 Arachis hypogaea HOM05D001734 ORTHO05D003483 6.5e-37 161.0 190 47.9
SEGI_30734 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 6.5e-37 161.0 123 60.2
arahy.Tifrunner.gnm1.ann1.1I6Y5K Arachis hypogaea HOM05D001734 ORTHO05D003483 8.4e-37 160.6 103 68.0
CBR_g290 Chara braunii HOM05D001734 ORTHO05D003483 4.2e-36 158.3 274 32.5
QL07p004594 Quercus lobata HOM05D001734 ORTHO05D020518 2.8e-32 145.6 187 44.9
CBR_g286 Chara braunii HOM05D000004 ORTHO05D000002 5.3e-31 141.4 235 36.6
arahy.Tifrunner.gnm1.ann1.EMU6Q2 Arachis hypogaea HOM05D001734 ORTHO05D003483 2.1e-27 129.4 116 54.3
SHI17004 Sapria himalayana HOM05D001734 ORTHO05D020992 4.6e-27 128.3 86 66.3
Ca_05696_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 2.5e-25 122.5 183 44.3
SHI17005 Sapria himalayana HOM05D001734 ORTHO05D003483 1.4e-23 116.7 235 31.5
SEGI_22749 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 4.1e-23 115.2 101 50.5
QL07p004610 Quercus lobata HOM05D001734 ORTHO05D020518 3.2e-20 105.5 123 49.6
SHI17003 Sapria himalayana HOM05D001734 ORTHO05D003483 2.7e-19 102.4 89 64.0
SHI17006 Sapria himalayana HOM05D001734 ORTHO05D020518 4.7e-19 101.7 137 40.1
TPR.G21158 Trifolium pratense HOM05D001734 ORTHO05D003483 3.0e-18 99.0 73 61.6
Sopen12g024730 Solanum pennellii HOM05D035692 ORTHO05D020992 1.1e-15 90.5 64 62.5
QL07p004626 Quercus lobata HOM05D001734 ORTHO05D003483 5.9e-14 84.7 64 68.8
Lalb_Chr08g0236511 Lupinus albus HOM05D001734 ORTHO05D003483 7.7e-14 84.3 106 48.1
TPR.G5917 Trifolium pratense HOM05D001734 ORTHO05D003483 7.7e-14 84.3 67 61.2
COL.COLO4_30229 Corchorus olitorius HOM05D001734 ORTHO05D003483 2.2e-13 82.8 266 28.9
SEGI_28316 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 3.8e-13 82.0 95 43.2
TAR629G1256 Trochodendron aralioides HOM05D001734 ORTHO05D003483 8.0e-11 74.3 75 45.3
Lsat_1_v5_gn_6_39261 Lactuca sativa HOM05D001734 ORTHO05D020518 2.6e-09 69.3 54 63.0
VMungo1309G1151 Vigna mungo HOM05D001734 ORTHO05D003483 9.7e-09 67.4 46 56.5
TPR.G18427 Trifolium pratense HOM05D001734 ORTHO05D003483 6.3e-08 64.7 52 57.7
Solyc07g150133.1 Solanum lycopersicum HOM05D001734 ORTHO05D020992 8.2e-08 64.3 56 50.0
arahy.Tifrunner.gnm1.ann1.0L1HI6 Arachis hypogaea HOM05D001734 ORTHO05D003483 1.8e-07 63.2 45 51.1
Lsat_1_v5_gn_4_160500 Lactuca sativa HOM05D005948 ORTHO05D007689 2.4e-07 62.8 42 78.6
QL01p024955 Quercus lobata HOM05D001734 ORTHO05D020518 2.0e-06 59.7 114 36.8
TPR.G5903 Trifolium pratense HOM05D001734 ORTHO05D003483 5.9e-06 58.2 34 73.5
TPR.G29227 Trifolium pratense HOM05D001734 ORTHO05D003483 7.7e-06 57.8 43 58.1


User provided reference genes

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