Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004235 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D021485 6.2e-39 163.7 85 100.0
CSS0012462 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D021485 6.2e-39 163.7 85 100.0
CSS0029787 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D021485 1.5e-37 159.1 85 97.6
CSS0039159 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 3.0e-33 144.8 87 87.4
Cc04_g09690 Coffea canephora HOM05D003387 ORTHO05D005400 3.7e-31 137.9 87 80.5
Cpa.g.sc49.99 Carica papaya HOM05D003387 ORTHO05D005400 6.2e-31 137.1 87 80.5
Lj7C377G3 Lonicera japonica HOM05D003387 ORTHO05D005400 1.1e-30 136.3 87 79.3
Gohir.A02G063500 Gossypium hirsutum HOM05D003387 ORTHO05D005400 1.4e-30 136.0 87 78.2
Gohir.D02G069100 Gossypium hirsutum HOM05D003387 ORTHO05D005400 1.4e-30 136.0 87 78.2
Gorai.005G078200 Gossypium raimondii HOM05D003387 ORTHO05D005400 1.4e-30 136.0 87 78.2
vmacro01482 Vaccinium macrocarpon HOM05D003387 ORTHO05D005400 1.4e-30 136.0 87 80.5
QL02p037738 Quercus lobata HOM05D003387 ORTHO05D005400 1.8e-30 135.6 87 79.3
QL02p038708 Quercus lobata HOM05D003387 ORTHO05D005400 1.8e-30 135.6 87 79.3
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.4e-30 135.2 87 78.2
Dinv25885 Davidia involucrata HOM05D003387 ORTHO05D005400 2.4e-30 135.2 87 79.3
Ciclev10001148m.g Citrus clementina HOM05D003387 ORTHO05D005400 3.1e-30 134.8 87 77.0
Nitab4.5_0002445g0040 Nicotiana tabacum HOM05D003387 ORTHO05D005400 3.1e-30 134.8 74 89.2
CiPaw.15G014400 Carya illinoinensis HOM05D003387 ORTHO05D005400 4.0e-30 134.4 87 78.2
Duzib116G0668 Durio zibethinus HOM05D003387 ORTHO05D005400 4.0e-30 134.4 87 77.0
Peaxi162Scf00076g00821 Petunia axillaris HOM05D003387 ORTHO05D005400 4.0e-30 134.4 87 78.2
Thecc.08G155500 Theobroma cacao HOM05D003387 ORTHO05D005400 4.0e-30 134.4 87 78.2
Sabra05G0148200 Salix brachista HOM05D003387 ORTHO05D005400 5.3e-30 134.0 76 84.2
Sopen12g010100 Solanum pennellii HOM05D003387 ORTHO05D005400 5.3e-30 134.0 87 78.2
PGSC0003DMG400018824 Solanum tuberosum HOM05D003387 ORTHO05D005400 5.3e-30 134.0 87 78.2
Duzib093G0739 Durio zibethinus HOM05D003387 ORTHO05D005400 6.9e-30 133.7 87 78.2
Potri.002G066000 Populus trichocarpa HOM05D003387 ORTHO05D005400 6.9e-30 133.7 87 75.9
Nitab4.5_0010347g0020 Nicotiana tabacum HOM05D003387 ORTHO05D005400 9.0e-30 133.3 83 81.9
Sabra02G0052700 Salix brachista HOM05D003387 ORTHO05D005400 1.2e-29 132.9 87 77.0
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 1.2e-29 132.9 87 75.9
Atru.chr13.2064 Acer truncatum HOM05D003387 ORTHO05D005400 1.5e-29 132.5 87 77.0
CSS0049572 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 1.5e-29 132.5 87 77.0
COL.COLO4_03566 Corchorus olitorius HOM05D003387 ORTHO05D005400 1.5e-29 132.5 74 86.5
Manes.02G181600 Manihot esculenta HOM05D003387 ORTHO05D005400 1.5e-29 132.5 87 77.0
Haze_17786 Corylus avellana HOM05D003387 ORTHO05D005400 2.0e-29 132.1 79 81.0
Eucgr.F02695 Eucalyptus grandis HOM05D003387 ORTHO05D005400 2.0e-29 132.1 87 77.0
TWI60G0696 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 2.0e-29 132.1 87 77.0
Lsat_1_v5_gn_9_41940 Lactuca sativa HOM05D003387 ORTHO05D005400 2.6e-29 131.7 87 75.9
Manes.18G093400 Manihot esculenta HOM05D003387 ORTHO05D005400 2.6e-29 131.7 87 75.9
PGR042G1308 Punica granatum HOM05D003387 ORTHO05D005400 2.6e-29 131.7 87 75.9
ClCG08G002590 Citrullus lanatus HOM05D003387 ORTHO05D005400 3.4e-29 131.3 87 75.9
Potri.005G194700 Populus trichocarpa HOM05D003387 ORTHO05D005400 5.8e-29 130.6 86 73.3
Actinidia10635 Actinidia chinensis HOM05D003387 ORTHO05D005400 7.6e-29 130.2 87 77.0
MELO3C024993.2 Cucumis melo HOM05D003387 ORTHO05D005400 7.6e-29 130.2 87 74.7
CsaV3_6G002770 Cucumis sativus L. HOM05D003387 ORTHO05D005400 7.6e-29 130.2 87 74.7
DCAR_014445 Daucus carota HOM05D003387 ORTHO05D005400 7.6e-29 130.2 87 74.7
Phvul.007G081900 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 7.6e-29 130.2 87 79.3
TWI34G1705 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 7.6e-29 130.2 87 75.9
Glyma.10G223300 Glycine max HOM05D003387 ORTHO05D005400 9.9e-29 129.8 87 79.3
VMungo0720G1662 Vigna mungo HOM05D003387 ORTHO05D005400 9.9e-29 129.8 87 78.2
Migut.K00003 Erythranthe guttata HOM05D003387 ORTHO05D005400 1.3e-28 129.4 87 78.2
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 2.2e-28 128.6 87 72.4
Glyma.20G168400 Glycine max HOM05D003387 ORTHO05D005400 2.9e-28 128.3 87 78.2
Sed0017554 Sechium edule HOM05D003387 ORTHO05D005400 2.9e-28 128.3 87 74.7
PGSC0003DMG400023660 Solanum tuberosum HOM05D003387 ORTHO05D005400 3.8e-28 127.9 83 78.3
CANSAT25G0465 Cannabis sativa HOM05D003387 ORTHO05D005400 4.9e-28 127.5 87 73.6
HanXRQChr05g0144181 Helianthus annuus HOM05D003387 ORTHO05D005400 6.4e-28 127.1 88 72.7
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 8.4e-28 126.7 74 82.4
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 8.4e-28 126.7 87 79.3
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 8.4e-28 126.7 87 79.3
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 1.1e-27 126.3 87 79.3
Solyc10g080720.2 Solanum lycopersicum HOM05D003387 ORTHO05D005400 1.4e-27 125.9 83 77.1
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 1.9e-27 125.6 87 75.9
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 1.9e-27 125.6 87 75.9
Prupe.8G036700 Prunus persica HOM05D003387 ORTHO05D005400 2.4e-27 125.2 87 73.6
Sed0013690 Sechium edule HOM05D003387 ORTHO05D005400 2.4e-27 125.2 86 72.1
THA.LOC104804671 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 3.2e-27 124.8 87 71.3
Lalb_Chr19g0130201 Lupinus albus HOM05D003387 ORTHO05D005400 4.2e-27 124.4 87 78.2
Hund26682 Selenicereus undatus HOM05D003387 ORTHO05D005400 4.2e-27 124.4 87 71.3
arahy.Tifrunner.gnm1.ann1.LGJ4PH Arachis hypogaea HOM05D003387 ORTHO05D005400 5.5e-27 124.0 87 74.7
arahy.Tifrunner.gnm1.ann1.RF14FM Arachis hypogaea HOM05D003387 ORTHO05D005400 5.5e-27 124.0 87 74.7
Sopen10g031260 Solanum pennellii HOM05D003387 ORTHO05D005400 5.5e-27 124.0 83 75.9
MD04G1044700 Malus domestica HOM05D003387 ORTHO05D005400 9.3e-27 123.2 87 73.6
FvH4_2g13280 Fragaria vesca HOM05D003387 ORTHO05D005400 1.2e-26 122.9 87 72.4
FAN15G3239 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.2e-26 122.9 87 72.4
FAN20G0358 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.2e-26 122.9 87 72.4
FAN24G3173 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.2e-26 122.9 87 72.4
RcHm_v2.0_Chr6g0274691 Rosa chinensis HOM05D003387 ORTHO05D005400 1.2e-26 122.9 87 72.4
Lj2g0008478 Lotus japonicus HOM05D003387 ORTHO05D005400 2.1e-26 122.1 87 75.9
Aa31LG6G9950 Aethionema arabicum HOM05D003387 ORTHO05D005400 2.7e-26 121.7 87 70.1
CARHR035330 Cardamine hirsuta HOM05D003387 ORTHO05D005400 3.5e-26 121.3 87 71.3
AT1G43190 Arabidopsis thaliana HOM05D003387 ORTHO05D005400 4.6e-26 120.9 87 71.3
Carub.0001s3449 Capsella rubella HOM05D003387 ORTHO05D005400 4.6e-26 120.9 87 71.3
Nn1g06041 Nelumbo nucifera HOM05D003387 ORTHO05D005400 4.6e-26 120.9 91 67.0
Psat6g192160 Pisum sativum HOM05D003387 ORTHO05D005400 4.6e-26 120.9 83 73.5
TAR376G0277 Trochodendron aralioides HOM05D003387 ORTHO05D005400 4.6e-26 120.9 77 77.9
AL1G51590 Arabidopsis lyrata HOM05D003387 ORTHO05D005400 6.0e-26 120.6 87 70.1
Thhalv10004261m.g Eutrema salsugineum HOM05D003387 ORTHO05D005400 6.0e-26 120.6 87 70.1
Sp1g32390 Schrenkiella parvula HOM05D003387 ORTHO05D005400 6.0e-26 120.6 87 70.1
THA.LOC104809206 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 6.0e-26 120.6 88 72.7
Ca_10675_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 7.9e-26 120.2 81 76.5
Medtr1g098530 Medicago truncatula HOM05D003387 ORTHO05D005400 7.9e-26 120.2 83 75.9
Ca_04511_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 1.0e-25 119.8 86 74.4
Psat1g100400 Pisum sativum HOM05D003387 ORTHO05D005400 1.0e-25 119.8 87 73.6
BcaB04g17624 Brassica carinata HOM05D003387 ORTHO05D005400 1.3e-25 119.4 87 70.1
BcaC07g37311 Brassica carinata HOM05D003387 ORTHO05D005400 1.3e-25 119.4 87 70.1
A08p06460 Brassica napus HOM05D003387 ORTHO05D005400 1.3e-25 119.4 87 70.1
C08p07450 Brassica napus HOM05D003387 ORTHO05D005400 1.3e-25 119.4 87 70.1
BolC8t47590H Brassica oleracea HOM05D003387 ORTHO05D005400 1.3e-25 119.4 87 70.1
BraA08t32655Z Brassica rapa HOM05D003387 ORTHO05D005400 1.3e-25 119.4 87 70.1
FAN27G0365 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.3e-25 119.4 74 78.4
Lj5g0027187 Lotus japonicus HOM05D003387 ORTHO05D005400 1.3e-25 119.4 87 72.4
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 1.8e-25 119.0 87 69.0
Nn5g28791 Nelumbo nucifera HOM05D003387 ORTHO05D005400 1.8e-25 119.0 76 77.6
MD00G1066300 Malus domestica HOM05D003387 ORTHO05D005400 2.3e-25 118.6 84 67.9
PSO170G1597 Papaver somniferum HOM05D003387 ORTHO05D005400 2.3e-25 118.6 71 78.9
PSO700G0143 Papaver somniferum HOM05D003387 ORTHO05D005400 2.3e-25 118.6 71 78.9
GSVIVG01022282001 Vitis vinifera HOM05D003387 ORTHO05D005400 2.3e-25 118.6 76 78.9
TAR628G0869 Trochodendron aralioides HOM05D003387 ORTHO05D005400 3.0e-25 118.2 77 76.6
TPR.G17034 Trifolium pratense HOM05D003387 ORTHO05D005400 3.9e-25 117.9 83 73.5
Cfa002795 Carpinus fangiana HOM05D003387 ORTHO05D005400 6.7e-25 117.1 89 65.2
Haze_25093 Corylus avellana HOM05D003387 ORTHO05D005400 6.7e-25 117.1 89 65.2
Lalb_Chr06g0161681 Lupinus albus HOM05D003387 ORTHO05D005400 1.1e-24 116.3 83 72.3
MBI16_g07738_MAGBIO Magnolia biondii HOM05D003387 ORTHO05D005400 1.1e-24 116.3 77 76.6
PSO541G1407 Papaver somniferum HOM05D003387 ORTHO05D005400 1.1e-24 116.3 92 64.1
CiPaw.04G088200 Carya illinoinensis HOM05D003387 ORTHO05D005400 3.3e-24 114.8 89 64.0
ATR0115G003 Amborella trichopoda HOM05D003387 ORTHO05D005400 4.3e-24 114.4 73 79.5
Lalb_Chr21g0305541 Lupinus albus HOM05D003387 ORTHO05D005400 4.3e-24 114.4 83 72.3
PSO675G7282 Papaver somniferum HOM05D003387 ORTHO05D005400 4.3e-24 114.4 75 73.3
ATR1126G056 Amborella trichopoda HOM05D003387 ORTHO05D005400 5.6e-24 114.0 91 68.1
TPR.G28008 Trifolium pratense HOM05D003387 ORTHO05D005400 5.6e-24 114.0 83 73.5
QL06p031237 Quercus lobata HOM05D003387 ORTHO05D005400 9.6e-24 113.2 88 64.8
Medtr6g043520 Medicago truncatula HOM05D003387 ORTHO05D005400 1.3e-23 112.8 83 74.7
Pp3c14_17110 Physcomitrium patens HOM05D003387 ORTHO05D005400 3.7e-23 111.3 80 70.0
CDE06G0083 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 6.2e-23 110.5 89 61.8
Lalb_Chr02g0141481 Lupinus albus HOM05D003387 ORTHO05D005400 8.2e-23 110.2 74 71.6
Aqoxy2G00397 Aquilegia oxysepala HOM05D003387 ORTHO05D005400 1.1e-22 109.8 92 62.0
Mapoly0001s0481 Marchantia polymorpha HOM05D003387 ORTHO05D005400 3.1e-22 108.2 79 70.9
Glyma.02G080500 Glycine max HOM05D003387 ORTHO05D005400 5.3e-22 107.5 73 82.2
HPP92_002768 Vanilla planifolia HOM05D003387 ORTHO05D005400 5.3e-22 107.5 76 71.1
Zm00001eb348540 Zea mays HOM05D003387 ORTHO05D005400 1.5e-21 105.9 91 60.4
Os05g0437300 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 4.5e-21 104.4 91 60.4
Sc16g0004050 Simmondsia chinensis HOM05D003387 ORTHO05D005400 1.0e-20 103.2 91 59.3
AagrBONN_evm.TU.Sc2ySwM_368.3328 Anthoceros agrestis HOM05D003387 ORTHO05D005400 1.7e-20 102.4 79 65.8
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 6.5e-20 100.5 89 57.3
SMO146G0032 Selaginella moellendorffii HOM05D003387 ORTHO05D005400 1.9e-19 99.0 76 64.5
CBR_g7995 Chara braunii HOM05D003387 ORTHO05D005400 3.2e-19 98.2 70 71.4
EL10Ac6g15237 Beta vulgaris HOM05D003387 ORTHO05D005400 4.2e-19 97.8 89 55.1
AUR62003637 Chenopodium quinoa HOM05D003387 ORTHO05D005400 9.3e-19 96.7 89 53.9
Zm00001eb289150 Zea mays HOM05D003387 ORTHO05D005400 2.7e-18 95.1 81 61.7
HPP92_001089 Vanilla planifolia HOM05D003387 ORTHO05D021485 3.5e-18 94.7 75 62.7
CDE08G0132 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 4.6e-18 94.4 60 73.3
SEGI_27673 Sequoiadendron giganteum HOM05D003387 ORTHO05D005400 7.9e-18 93.6 75 62.7
Os01g0867800 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 2.5e-16 88.6 90 52.2
arahy.Tifrunner.gnm1.ann1.56V0C4 Arachis hypogaea HOM05D003117 ORTHO05D021485 3.3e-16 88.2 60 70.0
Ah.02g123810 Amaranthus hybridus HOM05D003387 ORTHO05D005400 9.7e-16 86.7 89 49.4
Medtr6g037550 Medicago truncatula HOM05D003387 ORTHO05D005400 2.8e-15 85.1 81 58.0
SalBow1G1267 Salvia bowleyana HOM05D003387 ORTHO05D005400 5.3e-14 80.9 69 63.8
AUR62026677 Chenopodium quinoa HOM05D003387 ORTHO05D005400 4.5e-13 77.8 47 76.6
AUR62040585 Chenopodium quinoa HOM05D003387 ORTHO05D005400 1.7e-12 75.9 46 76.1
Pp3c14_14100 Physcomitrium patens HOM05D003387 ORTHO05D005400 5.0e-12 74.3 55 65.5
SGA_v2.0_scaffold274G46519 Striga asiatica HOM05D003387 ORTHO05D005400 1.1e-11 73.2 46 78.3
PSO541G6276 Papaver somniferum HOM05D003387 ORTHO05D021485 1.5e-08 62.8 50 56.0


User provided reference genes

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