Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012296 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 1.4e-37 159.1 76 100.0
arahy.Tifrunner.gnm1.ann1.5E18AM Arachis hypogaea HOM05D005043 ORTHO05D006182 8.1e-14 80.1 63 63.5
Prupe.4G164600 Prunus persica HOM05D005043 ORTHO05D006182 5.2e-13 77.4 38 92.1
Lj1C829T6 Lonicera japonica HOM05D005043 ORTHO05D006182 6.8e-13 77.0 36 97.2
Thecc.07G116500 Theobroma cacao HOM05D005043 ORTHO05D006182 6.8e-13 77.0 36 97.2
PGR083G1657 Punica granatum HOM05D005043 ORTHO05D006182 8.9e-13 76.6 36 94.4
GSVIVG01014196001 Vitis vinifera HOM05D005043 ORTHO05D006182 8.9e-13 76.6 37 91.9
MSTRG.12865 Avicennia marina HOM05D005043 ORTHO05D006182 1.5e-12 75.9 36 91.7
Rhsim06G0208200 Rhododendron simsii HOM05D005043 ORTHO05D006182 1.5e-12 75.9 38 89.5
arahy.Tifrunner.gnm1.ann1.NUK3H0 Arachis hypogaea HOM05D005043 ORTHO05D006182 2.0e-12 75.5 43 79.1
AUR62019576 Chenopodium quinoa HOM05D005043 ORTHO05D006182 2.0e-12 75.5 38 89.5
Thecc.07G117100 Theobroma cacao HOM05D005043 ORTHO05D006182 2.0e-12 75.5 36 94.4
CiPaw.11G160200 Carya illinoinensis HOM05D005043 ORTHO05D006182 2.6e-12 75.1 36 94.4
SGA_v2.0_scaffold70G23376 Striga asiatica HOM05D005043 ORTHO05D006182 2.6e-12 75.1 36 91.7
Haze_09322 Corylus avellana HOM05D005043 ORTHO05D006182 3.4e-12 74.7 36 91.7
Lsat_1_v5_gn_9_99860 Lactuca sativa HOM05D005043 ORTHO05D006182 3.4e-12 74.7 37 86.5
Ciclev10023741m.g Citrus clementina HOM05D005043 ORTHO05D006182 4.4e-12 74.3 36 91.7
DCAR_017172 Daucus carota HOM05D005043 ORTHO05D006182 4.4e-12 74.3 36 88.9
HanXRQChr13g0390281 Helianthus annuus HOM05D005043 ORTHO05D006182 4.4e-12 74.3 37 86.5
Lalb_Chr03g0031161 Lupinus albus HOM05D005043 ORTHO05D006182 4.4e-12 74.3 37 86.5
THA.LOC104822566 Tarenaya hassleriana HOM05D005043 ORTHO05D006182 4.4e-12 74.3 36 88.9
TAR636G1993 Trochodendron aralioides HOM05D005043 ORTHO05D006182 4.4e-12 74.3 55 67.3
vmacro11941 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 4.4e-12 74.3 38 86.8
vmacro23385 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 4.4e-12 74.3 38 86.8
vmacro23467 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 4.4e-12 74.3 38 86.8
Migut.M00727 Erythranthe guttata HOM05D005043 ORTHO05D006182 5.8e-12 73.9 36 91.7
Glyma.06G229100 Glycine max HOM05D005043 ORTHO05D006182 5.8e-12 73.9 36 88.9
Gohir.A01G054300 Gossypium hirsutum HOM05D005043 ORTHO05D006182 5.8e-12 73.9 36 91.7
Gohir.D01G042722 Gossypium hirsutum HOM05D005043 ORTHO05D006182 5.8e-12 73.9 36 91.7
Gorai.002G054600 Gossypium raimondii HOM05D005043 ORTHO05D006182 5.8e-12 73.9 36 91.7
MD11G1263900 Malus domestica HOM05D005043 ORTHO05D006182 5.8e-12 73.9 38 86.8
AUR62042780 Chenopodium quinoa HOM05D005043 ORTHO05D006182 7.6e-12 73.6 38 86.8
Duzib213G0837 Durio zibethinus HOM05D005043 ORTHO05D006182 7.6e-12 73.6 36 88.9
PSO384G1010 Papaver somniferum HOM05D005043 ORTHO05D006182 7.6e-12 73.6 36 88.9
Atru.chr2.2132 Acer truncatum HOM05D005043 ORTHO05D006182 9.9e-12 73.2 36 91.7
CANSAT35G1445 Cannabis sativa HOM05D005043 ORTHO05D006182 9.9e-12 73.2 38 86.8
Dinv18365 Davidia involucrata HOM05D005043 ORTHO05D006182 9.9e-12 73.2 38 84.2
Manes.15G094900 Manihot esculenta HOM05D005043 ORTHO05D006182 9.9e-12 73.2 36 88.9
Oeu031030.1 Olea europaea HOM05D005043 ORTHO05D006182 9.9e-12 73.2 36 88.9
Phvul.011G162300 Phaseolus vulgaris HOM05D005043 ORTHO05D006182 9.9e-12 73.2 36 86.1
SMO137G0206 Selaginella moellendorffii HOM05D005043 ORTHO05D006182 9.9e-12 73.2 39 84.6
PGSC0003DMG400007070 Solanum tuberosum HOM05D005043 ORTHO05D006182 9.9e-12 73.2 47 72.3
TWI38G0078 Tripterygium wilfordii HOM05D005043 ORTHO05D006182 9.9e-12 73.2 47 72.3
VMungo1127G0129 Vigna mungo HOM05D005043 ORTHO05D006182 9.9e-12 73.2 36 86.1
Aa31LG8G2100 Aethionema arabicum HOM05D005043 ORTHO05D006182 1.3e-11 72.8 36 91.7
CARHR089830 Cardamine hirsuta HOM05D005043 ORTHO05D006182 1.3e-11 72.8 36 91.7
Cpa.g.sc77.9 Carica papaya HOM05D005043 ORTHO05D006182 1.3e-11 72.8 36 88.9
COL.COLO4_17542 Corchorus olitorius HOM05D005043 ORTHO05D006182 1.3e-11 72.8 36 88.9
Hma1.2p1_0290F.1_g114850 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 1.3e-11 72.8 38 81.6
QL08p026231 Quercus lobata HOM05D005043 ORTHO05D006182 1.3e-11 72.8 36 86.1
Solyc07g062430.3 Solanum lycopersicum HOM05D005043 ORTHO05D006182 1.3e-11 72.8 37 83.8
Sopen07g030670 Solanum pennellii HOM05D005043 ORTHO05D006182 1.3e-11 72.8 37 83.8
arahy.Tifrunner.gnm1.ann1.5IY6XE Arachis hypogaea HOM05D005043 ORTHO05D006182 1.7e-11 72.4 37 86.5
A03p39040 Brassica napus HOM05D005043 ORTHO05D006182 1.7e-11 72.4 36 91.7
C03p47310 Brassica napus HOM05D005043 ORTHO05D006182 1.7e-11 72.4 36 91.7
BolC3t17001H Brassica oleracea HOM05D005043 ORTHO05D006182 1.7e-11 72.4 36 91.7
BraA03t13053Z Brassica rapa HOM05D005043 ORTHO05D006182 1.7e-11 72.4 36 91.7
CDE09G1444 Ceratophyllum demersum HOM05D005043 ORTHO05D006182 1.7e-11 72.4 43 79.1
HanXRQChr12g0362951 Helianthus annuus HOM05D005043 ORTHO05D006182 1.7e-11 72.4 37 83.8
AL3G27210 Arabidopsis lyrata HOM05D005043 ORTHO05D006182 2.2e-11 72.0 36 91.7
Carub.0003s1455 Capsella rubella HOM05D005043 ORTHO05D006182 2.2e-11 72.0 36 91.7
Thhalv10020510m.g Eutrema salsugineum HOM05D005043 ORTHO05D006182 2.2e-11 72.0 36 88.9
PSO478G3490 Papaver somniferum HOM05D005043 ORTHO05D006182 2.2e-11 72.0 36 83.3
PSO782G2110 Papaver somniferum HOM05D005043 ORTHO05D006182 2.2e-11 72.0 36 83.3
Cc05_g11070 Coffea canephora HOM05D005043 ORTHO05D006182 2.9e-11 71.6 37 81.1
Lalb_Chr19g0133801 Lupinus albus HOM05D005043 ORTHO05D006182 2.9e-11 71.6 36 86.1
MBI06_g29324_MAGBIO Magnolia biondii HOM05D005043 ORTHO05D006182 2.9e-11 71.6 36 88.9
Medtr6g466500 Medicago truncatula HOM05D005043 ORTHO05D006182 2.9e-11 71.6 36 88.9
Peaxi162Scf00111g01457 Petunia axillaris HOM05D005043 ORTHO05D006182 2.9e-11 71.6 37 81.1
Eucgr.F01242 Eucalyptus grandis HOM05D005043 ORTHO05D006182 3.8e-11 71.2 55 61.8
arahy.Tifrunner.gnm1.ann1.3VV2Z3 Arachis hypogaea HOM05D005043 ORTHO05D006182 4.9e-11 70.9 37 86.5
BcaB06g25330 Brassica carinata HOM05D005043 ORTHO05D006182 4.9e-11 70.9 43 79.1
BcaB06g29516 Brassica carinata HOM05D005043 ORTHO05D006182 4.9e-11 70.9 36 88.9
A05p34520 Brassica napus HOM05D005043 ORTHO05D006182 4.9e-11 70.9 36 88.9
C05p52260 Brassica napus HOM05D005043 ORTHO05D006182 4.9e-11 70.9 36 88.9
BraA05t22272Z Brassica rapa HOM05D005043 ORTHO05D006182 4.9e-11 70.9 36 88.9
Ca_26224_v3 Cicer arietinum L. HOM05D005043 ORTHO05D006182 4.9e-11 70.9 43 79.1
CsaV3_4G033100 Cucumis sativus L. HOM05D005043 ORTHO05D006182 4.9e-11 70.9 35 88.6
ECA240G3232 Erigeron canadensis HOM05D005043 ORTHO05D006182 4.9e-11 70.9 37 81.1
FvH4_3g18270 Fragaria vesca HOM05D005043 ORTHO05D006182 4.9e-11 70.9 38 81.6
FAN11G3478 Fragaria x ananassa HOM05D005043 ORTHO05D006182 4.9e-11 70.9 38 81.6
FAN21G3659 Fragaria x ananassa HOM05D005043 ORTHO05D006182 4.9e-11 70.9 38 81.6
unitig_749.g13541 Utricularia gibba HOM05D005043 ORTHO05D006182 4.9e-11 70.9 36 83.3
AT3G14890 Arabidopsis thaliana HOM05D005043 ORTHO05D006182 6.4e-11 70.5 36 88.9
CAN.G375.16 Capsicum annuum HOM05D005043 ORTHO05D006182 6.4e-11 70.5 36 86.1
Nn7g37328 Nelumbo nucifera HOM05D005043 ORTHO05D006182 6.4e-11 70.5 36 86.1
Sp3g13100 Schrenkiella parvula HOM05D005043 ORTHO05D006182 6.4e-11 70.5 43 79.1
TPR.G12585 Trifolium pratense HOM05D005043 ORTHO05D006182 6.4e-11 70.5 43 76.7
Aqoxy7G03872 Aquilegia oxysepala HOM05D005043 ORTHO05D006182 8.4e-11 70.1 38 78.9
ClCG11G017440 Citrullus lanatus HOM05D005043 ORTHO05D006182 8.4e-11 70.1 35 85.7
FAN16G3394 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.1e-10 69.7 38 78.9
HPP92_009836 Vanilla planifolia HOM05D005043 ORTHO05D006182 1.1e-10 69.7 36 83.3
Nitab4.5_0003565g0060 Nicotiana tabacum HOM05D005043 ORTHO05D006182 1.4e-10 69.3 35 82.9
Sed0006465 Sechium edule HOM05D005043 ORTHO05D006182 1.4e-10 69.3 35 85.7
BolC5t33915H Brassica oleracea HOM05D005043 ORTHO05D006182 1.9e-10 68.9 36 86.1
Glyma.12G157700 Glycine max HOM05D005043 ORTHO05D006182 1.9e-10 68.9 36 83.3
Nitab4.5_0006953g0040 Nicotiana tabacum HOM05D005043 ORTHO05D006182 1.9e-10 68.9 35 82.9
RcHm_v2.0_Chr5g0030901 Rosa chinensis HOM05D005043 ORTHO05D006182 1.9e-10 68.9 37 78.4
Potri.001G390500 Populus trichocarpa HOM05D005043 ORTHO05D006182 2.4e-10 68.6 38 78.9
Ah.04g164250 Amaranthus hybridus HOM05D005043 ORTHO05D006182 3.2e-10 68.2 36 80.6
FAN25G1853 Fragaria x ananassa HOM05D005043 ORTHO05D006182 3.2e-10 68.2 38 78.9
Pp3c6_17140 Physcomitrium patens HOM05D005043 ORTHO05D006182 3.2e-10 68.2 37 83.8
EL10Ac4g08345 Beta vulgaris HOM05D005043 ORTHO05D006182 5.4e-10 67.4 36 80.6
Sabra16G0255900 Salix brachista HOM05D005043 ORTHO05D006182 5.4e-10 67.4 38 78.9
MELO3C025641.2 Cucumis melo HOM05D005043 ORTHO05D006182 2.5e-07 58.5 30 83.3
Mapoly0056s0069 Marchantia polymorpha HOM05D005043 ORTHO05D006182 5.6e-07 57.4 36 69.4
MCO04G542 Micromonas commoda HOM05D005043 ORTHO05D006182 5.6e-07 57.4 35 68.6
Os01g0737401 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 5.6e-07 57.4 31 77.4


User provided reference genes

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