Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005405 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 3.6e-56 221.5 122 100.0
CSS0011003 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 3.6e-56 221.5 122 100.0
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.1e-49 199.9 120 83.3
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 8.0e-48 193.7 119 83.2
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 4.7e-40 167.9 153 64.1
CSS0034996 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 6.4e-37 157.5 119 81.5
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 3.5e-35 151.8 156 56.4
CSS0022737 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.9e-33 146.0 90 82.2
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 2.5e-33 145.6 148 58.1
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 8.1e-32 140.6 156 52.6
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 1.9e-25 119.4 144 49.3
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 5.8e-22 107.8 147 46.9
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 5.8e-22 107.8 141 47.5
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 3.8e-21 105.1 141 46.8
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 1.9e-20 102.8 148 42.6
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 7.1e-20 100.9 151 45.7
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 1.2e-19 100.1 150 42.0
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.6e-19 99.8 150 42.0
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 2.1e-19 99.4 153 42.5
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 2.1e-19 99.4 150 42.0
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 3.5e-19 98.6 151 41.7
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 3.5e-19 98.6 152 42.1
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 4.6e-19 98.2 152 42.1
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 6.0e-19 97.8 150 41.3
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 6.0e-19 97.8 150 41.3
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 1.3e-18 96.7 151 41.7
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 1.3e-18 96.7 152 41.4
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 1.7e-18 96.3 151 43.0
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 6.6e-18 94.4 151 41.7
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 1.1e-17 93.6 124 49.2
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 1.1e-17 93.6 153 42.5
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 1.9e-17 92.8 133 45.1
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 1.9e-17 92.8 153 42.5
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 1.9e-17 92.8 153 43.1
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 1.9e-17 92.8 150 42.7
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 3.3e-17 92.0 82 63.4
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 5.6e-17 91.3 153 41.8
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 5.6e-17 91.3 149 43.6
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 5.6e-17 91.3 149 41.6
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 1.3e-16 90.1 85 58.8
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 2.4e-15 85.9 151 40.4
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 2.4e-15 85.9 83 59.0
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 2.4e-15 85.9 151 39.1
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 5.3e-15 84.7 83 56.6
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 6.9e-15 84.3 80 60.0
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 6.9e-15 84.3 80 60.0
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 9.0e-15 84.0 83 55.4
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 9.0e-15 84.0 90 57.8
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 1.2e-14 83.6 117 50.4
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 1.2e-14 83.6 145 41.4
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 1.2e-14 83.6 87 56.3
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 1.5e-14 83.2 148 38.5
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 1.5e-14 83.2 78 62.8
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 1.5e-14 83.2 144 41.7
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 2.6e-14 82.4 87 55.2
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 2.6e-14 82.4 153 37.9
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 2.6e-14 82.4 80 58.8
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 4.5e-14 81.6 87 51.7
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 4.5e-14 81.6 81 58.0
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 4.5e-14 81.6 81 58.0
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 5.8e-14 81.3 128 43.0
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 5.8e-14 81.3 148 39.9
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 7.6e-14 80.9 152 38.2
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 9.9e-14 80.5 150 40.0
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 9.9e-14 80.5 81 56.8
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 9.9e-14 80.5 81 54.3
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 1.3e-13 80.1 81 56.8
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 1.7e-13 79.7 150 38.7
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 1.7e-13 79.7 140 38.6
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 1.7e-13 79.7 80 57.5
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 2.2e-13 79.3 143 39.2
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 2.2e-13 79.3 140 41.4
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 3.8e-13 78.6 94 53.2
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 1.1e-12 77.0 80 56.2
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 1.1e-12 77.0 154 37.0
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 1.1e-12 77.0 150 38.0
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 1.4e-12 76.6 138 40.6
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 1.9e-12 76.3 92 51.1
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 2.4e-12 75.9 146 39.7
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 3.2e-12 75.5 152 38.2
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 3.2e-12 75.5 145 40.0
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 3.2e-12 75.5 142 38.0
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 5.4e-12 74.7 69 62.3
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 7.1e-12 74.3 150 36.0
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 7.1e-12 74.3 143 40.6
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 9.3e-12 73.9 150 39.3
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 1.6e-11 73.2 146 39.7
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 2.7e-11 72.4 145 38.6
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 6.0e-11 71.2 146 38.4
TPR.G23531 Trifolium pratense HOM05D006779 ORTHO05D008491 7.9e-11 70.9 146 33.6
Zm00001eb373090 Zea mays HOM05D006779 ORTHO05D008491 7.9e-11 70.9 72 54.2
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 1.3e-10 70.1 143 36.4
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 1.8e-10 69.7 77 53.2
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 5.1e-10 68.2 125 40.0
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 5.1e-10 68.2 147 36.7
AL1G56960 Arabidopsis lyrata HOM05D006779 ORTHO05D008491 1.5e-09 66.6 69 56.5
CDE03G0027 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 2.5e-09 65.9 70 52.9
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 2.5e-09 65.9 137 35.8
AUR62022456 Chenopodium quinoa HOM05D006779 ORTHO05D008491 1.6e-08 63.2 117 38.5
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 2.8e-08 62.4 64 57.8
CDE06G1966 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 3.7e-08 62.0 84 44.0
Medtr4g086640 Medicago truncatula HOM05D006779 ORTHO05D008491 5.3e-07 58.2 69 49.3


User provided reference genes

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