Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010935 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D010670 2.4e-50 201.8 100 100.0
CSS0049488 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 2.7e-33 145.2 135 61.5
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 2.7e-17 92.0 97 54.6
GSVIVG01000874001 Vitis vinifera HOM05D001670 ORTHO05D002980 5.6e-15 84.3 97 47.4
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 9.0e-13 77.0 92 47.8
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 1.2e-12 76.6 90 46.7
Thecc.03G154100 Theobroma cacao HOM05D001670 ORTHO05D002980 1.5e-12 76.3 84 45.2
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 2.0e-12 75.9 87 44.8
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 2.6e-12 75.5 90 47.8
Actinidia24999 Actinidia chinensis HOM05D001670 ORTHO05D002980 4.5e-12 74.7 96 43.8
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 5.8e-12 74.3 85 44.7
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 7.6e-12 73.9 82 46.3
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 1.0e-11 73.6 90 42.2
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 1.3e-11 73.2 100 41.0
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.3e-11 73.2 90 45.6
CDE11G1219 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 1.7e-11 72.8 92 40.2
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 1.7e-11 72.8 84 48.8
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 1.7e-11 72.8 90 45.6
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 1.7e-11 72.8 115 40.9
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 1.7e-11 72.8 87 42.5
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 1.7e-11 72.8 84 47.6
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 2.2e-11 72.4 95 45.3
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 2.2e-11 72.4 82 46.3
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 3.8e-11 71.6 84 45.2
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 3.8e-11 71.6 90 43.3
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 4.9e-11 71.2 84 47.6
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 4.9e-11 71.2 84 47.6
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 6.5e-11 70.9 93 41.9
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 6.5e-11 70.9 90 43.3
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 6.5e-11 70.9 90 43.3
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 6.5e-11 70.9 88 43.2
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 6.5e-11 70.9 90 42.2
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 8.4e-11 70.5 90 43.3
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 8.4e-11 70.5 113 39.8
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 1.1e-10 70.1 100 40.0
Haze_02720 Corylus avellana HOM05D001670 ORTHO05D002980 1.1e-10 70.1 102 38.2
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 1.1e-10 70.1 85 43.5
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 1.4e-10 69.7 106 40.6
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 1.4e-10 69.7 87 42.5
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 1.9e-10 69.3 104 38.5
PSO017G3667 Papaver somniferum HOM05D001670 ORTHO05D002980 1.9e-10 69.3 93 38.7
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 1.9e-10 69.3 90 40.0
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 2.5e-10 68.9 92 45.7
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.5e-10 68.9 85 43.5
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.5e-10 68.9 85 42.4
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 2.5e-10 68.9 106 38.7
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 2.5e-10 68.9 89 42.7
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 3.2e-10 68.6 80 46.2
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 3.2e-10 68.6 85 42.4
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 3.2e-10 68.6 85 42.4
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 3.2e-10 68.6 85 42.4
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 3.2e-10 68.6 85 42.4
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 3.2e-10 68.6 89 41.6
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 4.2e-10 68.2 93 44.1
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 5.5e-10 67.8 96 39.6
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 5.5e-10 67.8 82 42.7
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 5.5e-10 67.8 93 41.9
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 5.5e-10 67.8 90 42.2
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 5.5e-10 67.8 90 42.2
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 7.1e-10 67.4 87 42.5
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 7.1e-10 67.4 98 39.8
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 7.1e-10 67.4 90 43.3
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 7.1e-10 67.4 98 39.8
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 7.1e-10 67.4 94 41.5
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 7.1e-10 67.4 90 42.2
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 9.3e-10 67.0 89 41.6
Hma1.2p1_0341F.1_g130260 Hydrangea macrophylla HOM05D001670 ORTHO05D002980 9.3e-10 67.0 85 45.9
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 9.3e-10 67.0 95 40.0
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 1.2e-09 66.6 94 39.4
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 1.2e-09 66.6 87 43.7
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 1.6e-09 66.2 108 37.0
Gohir.D11G082333 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.6e-09 66.2 90 41.1
Gohir.D11G082400 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.6e-09 66.2 90 41.1
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 1.6e-09 66.2 90 41.1
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 1.6e-09 66.2 114 38.6
Oeu064576.1 Olea europaea HOM05D001670 ORTHO05D002980 1.6e-09 66.2 84 44.0
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 1.6e-09 66.2 100 37.0
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 2.1e-09 65.9 84 41.7
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 2.1e-09 65.9 90 41.1
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.7e-09 65.5 85 41.2
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 2.7e-09 65.5 90 43.3
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 3.5e-09 65.1 90 43.3
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 3.5e-09 65.1 108 38.0
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 3.5e-09 65.1 84 41.7
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 3.5e-09 65.1 84 42.9
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 3.5e-09 65.1 83 42.2
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 3.5e-09 65.1 94 40.4
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 3.5e-09 65.1 94 40.4
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 3.5e-09 65.1 88 43.2
CSS0017442 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D010670 4.6e-09 64.7 90 43.3
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 6.0e-09 64.3 88 39.8
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 7.9e-09 63.9 82 41.5
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 1.0e-08 63.5 91 38.5
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 1.3e-08 63.2 90 41.1
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 1.3e-08 63.2 84 40.5
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 1.3e-08 63.2 84 44.0
SMO340G0305 Selaginella moellendorffii HOM05D001670 ORTHO05D002980 1.3e-08 63.2 102 36.3
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 1.8e-08 62.8 88 40.9
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 1.8e-08 62.8 39 64.1
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 1.8e-08 62.8 93 38.7
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 2.3e-08 62.4 90 40.0
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 2.3e-08 62.4 90 40.0
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 2.3e-08 62.4 90 40.0
Lj7C538T12 Lonicera japonica HOM05D001670 ORTHO05D002980 2.3e-08 62.4 116 37.1
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 2.3e-08 62.4 83 41.0
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 3.0e-08 62.0 105 39.0
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 3.0e-08 62.0 105 39.0
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 3.0e-08 62.0 90 40.0
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 3.0e-08 62.0 67 49.3
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 3.0e-08 62.0 104 36.5
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 3.9e-08 61.6 90 41.1
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 6.7e-08 60.8 39 61.5
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 6.7e-08 60.8 39 61.5
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 6.7e-08 60.8 89 40.4
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 6.7e-08 60.8 92 38.0
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 8.7e-08 60.5 90 40.0
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 8.7e-08 60.5 90 38.9
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 8.7e-08 60.5 90 38.9
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 8.7e-08 60.5 90 40.0
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 8.7e-08 60.5 90 38.9
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 8.7e-08 60.5 90 40.0
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 8.7e-08 60.5 90 40.0
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 1.1e-07 60.1 61 47.5
C08p54070 Brassica napus HOM05D001670 ORTHO05D002980 1.1e-07 60.1 90 40.0
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 1.1e-07 60.1 90 40.0
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 1.5e-07 59.7 90 40.0
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 1.5e-07 59.7 90 40.0
Lj5A710T19 Lonicera japonica HOM05D001670 ORTHO05D015222 1.5e-07 59.7 42 59.5
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 1.9e-07 59.3 107 34.6
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 2.5e-07 58.9 90 38.9
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 2.5e-07 58.9 42 57.1
Glyma.03G118200 Glycine max HOM05D001670 ORTHO05D002980 3.3e-07 58.5 89 40.4
Lsat_1_v5_gn_5_84901 Lactuca sativa HOM05D001670 ORTHO05D010670 3.3e-07 58.5 46 52.2
AUR62004150 Chenopodium quinoa HOM05D001670 ORTHO05D002980 4.3e-07 58.2 100 34.0
AUR62013711 Chenopodium quinoa HOM05D001670 ORTHO05D002980 4.3e-07 58.2 100 34.0
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 7.4e-07 57.4 84 39.3
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 7.4e-07 57.4 61 45.9
Cpa.g.sc587.1 Carica papaya HOM05D001670 ORTHO05D002980 7.4e-07 57.4 61 49.2
BcaNung05287 Brassica carinata HOM05D001670 ORTHO05D002980 9.6e-07 57.0 90 37.8
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 9.6e-07 57.0 90 37.8
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 9.6e-07 57.0 91 39.6
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 1.3e-06 56.6 55 50.9
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 1.3e-06 56.6 102 33.3
CBR_g37673 Chara braunii HOM05D001670 ORTHO05D002980 1.6e-06 56.2 108 34.3
MBI15_g29839_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D010670 2.8e-06 55.5 42 54.8
MBI15_g34611_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D010670 2.8e-06 55.5 42 54.8
Os03g0102366 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 2.8e-06 55.5 38 60.5
MBI08_g34222_MAGBIO Magnolia biondii HOM05D000942 ORTHO05D010670 4.8e-06 54.7 42 54.8
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 6.2e-06 54.3 82 37.8


User provided reference genes

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