Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 0.0e+00 1435.2 724 100.0
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 0.0e+00 1385.2 711 98.7
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 0.0e+00 1101.3 713 80.6
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 3.6e-297 1024.6 712 74.9
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 3.8e-278 961.4 717 71.3
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 6.1e-268 927.5 728 69.5
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.1e-256 890.2 719 64.5
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 4.1e-256 888.3 722 65.5
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 4.5e-255 884.8 722 65.4
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 6.5e-254 880.9 760 62.1
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 2.2e-246 855.9 724 65.3
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 8.5e-246 854.0 725 63.0
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 8.0e-244 847.4 725 63.3
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 7.4e-242 840.9 727 61.6
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 2.7e-236 822.4 724 61.6
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 6.8e-235 817.8 715 61.7
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 4.5e-231 805.1 720 59.7
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.7e-230 803.1 716 61.2
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 2.2e-230 802.7 720 60.7
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 1.5e-229 800.0 713 61.3
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 7.2e-229 797.7 729 59.3
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 1.6e-228 796.6 711 60.5
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 1.4e-227 793.5 714 60.6
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 1.5e-226 790.0 721 59.2
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 4.4e-226 788.5 711 60.3
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 4.8e-225 785.0 587 70.7
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 1.1e-224 783.9 711 60.5
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 2.3e-222 776.2 696 59.6
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 2.9e-222 775.8 720 59.0
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 1.5e-221 773.5 716 60.2
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 2.1e-220 769.6 722 59.1
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 6.1e-220 768.1 718 59.3
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 2.3e-219 766.1 713 58.5
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 4.0e-219 765.4 734 58.3
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 1.2e-218 763.8 736 57.9
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 3.4e-218 762.3 726 58.5
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 4.4e-218 761.9 724 58.8
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 7.5e-218 761.1 726 58.4
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 1.1e-216 757.3 716 59.2
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 2.4e-216 756.1 716 59.1
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 7.8e-215 751.1 719 57.4
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 2.9e-214 749.2 712 58.6
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 1.9e-213 746.5 715 55.5
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 4.3e-213 745.3 720 57.2
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 2.1e-212 743.0 720 57.8
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 2.8e-212 742.7 734 55.9
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 2.8e-212 742.7 719 57.2
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 3.6e-212 742.3 720 56.9
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 1.0e-211 740.7 764 56.3
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 7.5e-210 734.6 715 56.5
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 9.8e-210 734.2 736 55.8
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 9.8e-210 734.2 720 56.7
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 1.3e-209 733.8 719 56.7
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 2.2e-209 733.0 722 56.1
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 4.9e-209 731.9 731 55.8
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 5.4e-208 728.4 714 56.4
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 4.6e-207 725.3 716 56.8
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 7.8e-207 724.5 755 54.6
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 1.3e-206 723.8 720 56.7
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 2.3e-206 723.0 713 57.2
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 2.3e-206 723.0 720 56.7
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 1.1e-205 720.7 718 54.9
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 2.1e-204 716.5 719 56.2
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 2.3e-203 713.0 738 53.8
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 8.3e-201 704.5 719 55.6
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 6.6e-198 694.9 720 53.3
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 1.5e-197 693.7 625 61.0
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 1.9e-197 693.3 714 54.8
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 3.6e-196 689.1 615 60.3
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 1.8e-195 686.8 713 53.6
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 3.4e-194 682.6 723 54.5
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 5.8e-194 681.8 738 52.8
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 2.4e-192 676.4 710 53.0
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 3.2e-192 676.0 720 52.2
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 5.4e-192 675.2 600 62.2
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 7.1e-192 674.9 715 53.6
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 3.5e-191 672.5 721 53.5
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 3.5e-191 672.5 721 53.5
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 2.4e-187 659.8 733 51.7
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 5.2e-187 658.7 678 53.8
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 2.0e-186 656.8 747 51.4
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 2.9e-185 652.9 717 52.6
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 1.9e-181 640.2 716 52.5
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 2.0e-178 630.2 713 50.2
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 1.3e-177 627.5 715 49.8
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 1.3e-177 627.5 713 50.1
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 1.1e-176 624.4 745 48.2
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 2.4e-176 623.2 722 49.9
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 3.2e-176 622.9 725 49.5
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 4.2e-176 622.5 724 49.4
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 5.6e-173 612.1 711 48.8
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 1.2e-170 604.4 721 48.1
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 2.0e-170 603.6 735 48.3
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 4.5e-170 602.4 724 48.5
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 6.4e-169 598.6 722 48.1
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 1.9e-168 597.0 716 48.6
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 9.3e-168 594.7 712 47.9
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 1.3e-166 590.9 723 46.9
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 5.6e-165 585.5 729 49.0
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 1.4e-163 580.9 768 45.4
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 3.4e-154 549.7 763 44.7
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.0e-134 485.0 486 54.9
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 1.1e-133 481.5 777 40.3
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 5.3e-131 472.6 724 40.3
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 4.2e-128 463.0 736 39.3
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 3.6e-127 459.9 823 38.9
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 8.5e-113 412.1 694 38.5
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 2.0e-98 364.4 636 36.8
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 8.6e-97 359.0 459 47.5
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 1.3e-63 248.8 205 61.0
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 3.5e-58 230.7 512 31.6
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 1.5e-45 188.7 456 29.4
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 8.5e-36 156.4 268 37.3
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 1.8e-30 138.7 313 31.6
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.8e-30 138.7 145 53.8
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.8e-25 122.1 270 28.9
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 7.2e-19 100.1 170 31.2
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 3.7e-15 87.8 109 45.9
GSVIVG01023078001 Vitis vinifera HOM05D000241 ORTHO05D440677 2.4e-06 58.5 44 61.4


User provided reference genes

Program Settings