Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 9.9e-155 550.1 273 100.0
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 6.4e-146 520.8 259 100.0
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 3.2e-137 491.9 259 92.7
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 4.2e-137 491.5 259 92.7
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 3.0e-135 485.3 259 89.6
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 5.1e-135 484.6 259 90.3
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 8.7e-135 483.8 259 90.7
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 1.1e-134 483.4 262 90.1
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 1.1e-134 483.4 267 89.5
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 3.3e-134 481.9 259 89.6
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 3.3e-134 481.9 259 89.2
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 3.3e-134 481.9 259 90.0
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 4.3e-134 481.5 259 89.6
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 5.6e-134 481.1 259 90.0
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 7.4e-134 480.7 259 90.0
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 9.6e-134 480.3 259 89.2
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.3e-133 479.9 259 88.8
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 1.6e-133 479.6 258 91.1
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 2.1e-133 479.2 259 88.8
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 2.8e-133 478.8 259 88.4
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 2.8e-133 478.8 259 88.8
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 3.7e-133 478.4 259 89.2
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 3.7e-133 478.4 259 88.0
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 3.7e-133 478.4 259 88.4
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 3.7e-133 478.4 287 84.7
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 4.8e-133 478.0 266 89.5
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 6.2e-133 477.6 259 88.8
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 6.2e-133 477.6 259 89.6
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 6.2e-133 477.6 259 89.2
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 6.2e-133 477.6 259 87.6
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 8.2e-133 477.2 259 88.4
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 8.2e-133 477.2 259 88.4
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 8.2e-133 477.2 261 87.0
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 8.2e-133 477.2 259 88.4
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 1.1e-132 476.9 259 89.2
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 1.1e-132 476.9 259 87.6
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.1e-132 476.9 259 88.0
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 1.1e-132 476.9 259 89.2
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.4e-132 476.5 259 87.6
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.4e-132 476.5 259 87.6
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 1.4e-132 476.5 259 89.2
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 1.4e-132 476.5 261 88.5
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 1.8e-132 476.1 259 88.8
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.8e-132 476.1 259 88.0
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 1.8e-132 476.1 259 88.4
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 1.8e-132 476.1 259 88.8
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 1.8e-132 476.1 259 89.2
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 2.4e-132 475.7 259 88.8
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 2.4e-132 475.7 259 88.0
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 2.4e-132 475.7 259 90.0
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 3.1e-132 475.3 256 90.2
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 3.1e-132 475.3 259 88.0
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 4.0e-132 474.9 259 87.3
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 4.0e-132 474.9 259 88.8
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 4.0e-132 474.9 259 88.8
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 5.3e-132 474.6 259 88.0
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 5.3e-132 474.6 259 88.0
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 6.9e-132 474.2 259 89.2
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 6.9e-132 474.2 259 87.6
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 9.0e-132 473.8 259 86.9
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 9.0e-132 473.8 259 88.8
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 9.0e-132 473.8 256 89.8
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 9.0e-132 473.8 259 88.8
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 1.2e-131 473.4 257 89.5
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 1.5e-131 473.0 259 88.8
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.5e-131 473.0 259 87.6
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 1.5e-131 473.0 259 88.8
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 1.5e-131 473.0 259 88.4
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 1.5e-131 473.0 256 89.5
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 1.5e-131 473.0 258 87.2
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 2.0e-131 472.6 257 90.3
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 2.0e-131 472.6 259 88.4
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 2.6e-131 472.2 257 87.2
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 2.6e-131 472.2 259 88.8
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 2.6e-131 472.2 257 88.3
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 2.6e-131 472.2 259 87.6
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 2.6e-131 472.2 259 86.9
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 3.4e-131 471.9 262 87.4
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 3.4e-131 471.9 259 88.0
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 3.4e-131 471.9 259 88.0
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 4.5e-131 471.5 259 86.9
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 4.5e-131 471.5 259 88.0
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 4.5e-131 471.5 259 88.4
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 4.5e-131 471.5 256 89.5
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 5.8e-131 471.1 259 88.4
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 1.3e-130 469.9 259 86.9
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 1.3e-130 469.9 257 87.5
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 1.7e-130 469.5 255 88.6
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 1.7e-130 469.5 256 87.9
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 2.2e-130 469.2 259 87.3
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 2.9e-130 468.8 259 86.9
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 2.9e-130 468.8 259 86.9
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 3.2e-129 465.3 259 87.6
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 4.2e-129 464.9 266 83.8
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 7.1e-129 464.2 256 87.9
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 7.1e-129 464.2 280 81.4
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 1.6e-128 463.0 258 87.2
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 2.1e-128 462.6 256 87.5
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 2.1e-128 462.6 246 90.7
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 2.1e-128 462.6 258 86.4
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 7.9e-128 460.7 260 87.3
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 7.9e-128 460.7 259 85.3
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 1.0e-127 460.3 258 86.0
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 1.0e-127 460.3 260 87.3
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 1.0e-127 460.3 255 89.4
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 1.3e-127 459.9 263 86.7
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 8.7e-127 457.2 331 73.4
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 1.5e-126 456.4 258 87.6
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 7.4e-126 454.1 259 87.6
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 1.6e-125 453.0 259 86.5
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 1.6e-125 453.0 259 86.5
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 1.6e-125 453.0 242 92.6
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 2.2e-125 452.6 264 86.0
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 3.7e-125 451.8 259 86.1
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 4.8e-125 451.4 259 85.7
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 4.1e-124 448.4 245 88.6
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 6.9e-124 447.6 265 83.0
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 1.0e-122 443.7 257 84.8
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 1.0e-122 443.7 268 83.2
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 1.3e-122 443.4 280 81.4
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 5.0e-122 441.4 253 84.6
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 1.1e-121 440.3 259 83.8
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 4.6e-120 434.9 261 84.3
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 4.6e-120 434.9 266 82.7
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 4.6e-120 434.9 266 82.7
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 1.4e-119 433.3 317 70.7
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 2.4e-116 422.5 225 90.7
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 9.1e-116 420.6 225 89.3
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 9.1e-116 420.6 252 79.0
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 1.4e-113 413.3 240 81.7
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 2.5e-113 412.5 259 79.2
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 4.2e-113 411.8 226 89.4
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 9.4e-113 410.6 259 78.8
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 1.8e-111 406.4 261 74.3
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 1.5e-110 403.3 283 74.6
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 3.2e-105 385.6 262 74.8
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 4.2e-105 385.2 259 76.1
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.4e-100 370.2 362 59.1
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 2.6e-99 365.9 259 68.7
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 3.8e-98 362.1 198 87.9
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 1.0e-95 354.0 275 67.6
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 4.1e-92 342.0 186 86.6
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 5.5e-89 331.6 271 65.3
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 9.4e-89 330.9 384 51.0
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 4.5e-83 312.0 160 92.5
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 7.2e-81 304.7 162 87.7
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 3.4e-78 295.8 261 60.9
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 4.9e-77 292.0 271 60.9
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.9e-68 263.5 194 71.6
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 1.5e-65 253.8 252 48.4
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-63 246.9 148 77.0
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 9.2e-52 208.0 193 60.1
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 1.7e-50 203.8 133 75.9
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 1.7e-50 203.8 133 75.9
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 9.3e-36 154.8 141 59.6
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 1.1e-31 141.4 129 62.8
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 2.1e-24 117.1 91 63.7
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 2.9e-21 106.7 64 81.2
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 6.5e-21 105.5 64 70.3
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 1.6e-19 100.9 83 63.9
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.6e-19 100.9 83 63.9
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 6.2e-16 89.0 54 74.1
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 7.6e-14 82.0 46 84.8
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.4e-12 77.8 90 54.4
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.4e-12 77.8 90 54.4
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 9.3e-12 75.1 45 75.6
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 1.5e-09 67.8 45 66.7
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.3e-08 64.7 37 86.5
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 1.5e-06 57.8 34 85.3


User provided reference genes

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