Gene: Sopen11g030360

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g030360
  • Transcript Identifier Sopen11g030360.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 65773615-65778635 : positive

Gene Family Information

  • ID HOM05D004270
  • #Genes/#Species 166/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g030360.1

Descriptions

  • Description Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall rhamnogalacturonan II. | AtkdsA1 | FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity | INVOLVED IN: metabolic process, rhamnogalacturonan II biosynthetic process | LOCATED IN: cytoplasm | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA , Aldolase-type TIM barrel , 3-deoxy-8-phosphooctulonate synthase | BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009058
IEA
InterProbiosynthetic process
GO:0009860
ISO
PLAZA Integrative Orthologypollen tube growth AT1G79500
GO:0010306
ISO
PLAZA Integrative Orthologyrhamnogalacturonan II biosynthetic process AT1G79500
GO:0046364
ISO
PLAZA Integrative Orthologymonosaccharide biosynthetic process AT1G79500
GO:0048868
ISO
PLAZA Integrative Orthologypollen tube development AT1G79500

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
InterProcatalytic activity
GO:0008676
IEA
InterPro3-deoxy-8-phosphooctulonate synthase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
InterProcytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013785 Aldolase-type TIM barrel
IPR006269 3-deoxy-8-phosphooctulonate synthase
IPR006218 DAHP synthetase I/KDSA
Mapman id Description
21.3.3.1.2.2 Cell wall organisation.pectin.rhamnogalacturonan II.biosynthesis.2-keto-3-deoxymanno-octulosonic acid (KDO) biosynthesis.KDO-8-phosphate synthase