Gene: AT1G16340
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G16340
- Transcript Identifier AT1G16340.1
- Gene Type Coding gene
- Location Chr1 : 5588123-5590469 : negative
Gene Family Information
- ID HOM05D004270
- #Genes/#Species 166/94
- Phylogenetic origin
- ID ORTHO05D005037
- #Genes/#Species 165/94
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G16340.1
- symbol ATKDSA2
- uniprot Q6NQL4
Descriptions
- Description Aldolase superfamily protein
- Computational description ATKDSA2; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: metabolic process, rhamnogalacturonan II biosynthetic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G79500.4); Has 7899 Blast hits to 7897 proteins in 2055 species: Archae - 64; Bacteria - 4967; Metazoa - 4; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 2806 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009058 | IEA | GOA Database | biosynthetic process | |
| GO:0009058 | IEA | InterPro | biosynthetic process | |
| GO:0046364 | IBA | GOA Database | monosaccharide biosynthetic process | |
| GO:0046364 | IDA | Gene Ontology | monosaccharide biosynthetic process | 1 |
| GO:0071555 | IEA | GOA Database | cell wall organization | |
| GO:0048868 | IMP | Gene Ontology | pollen tube development | 1 |
| GO:0009860 | IMP | Gene Ontology | pollen tube growth | 1 |
| GO:0010306 | TAS | Gene Ontology | rhamnogalacturonan II biosynthetic process | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0003824 | IEA | GOA Database | catalytic activity | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0008676 | IBA IEA | GOA Database | 3-deoxy-8-phosphooctulonate synthase activity | |
| GO:0008676 | IDA ISS | Gene Ontology | 3-deoxy-8-phosphooctulonate synthase activity | 1 2 |
| GO:0008676 | IEA | InterPro | 3-deoxy-8-phosphooctulonate synthase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0005737 | IEA | InterPro | cytoplasm | |
| GO:0005829 | IBA | GOA Database | cytosol |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 21.3.3.1.2.2 | Cell wall organisation.pectin.rhamnogalacturonan II.biosynthesis.2-keto-3-deoxymanno-octulosonic acid (KDO) biosynthesis.KDO-8-phosphate synthase |