Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1451.0 749 100.0
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1400.6 749 96.5
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 0.0e+00 1222.6 728 84.2
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 0.0e+00 1222.2 763 79.8
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 0.0e+00 1192.9 695 83.0
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 0.0e+00 1184.5 711 81.4
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 0.0e+00 1139.0 622 85.5
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 0.0e+00 1135.6 621 84.9
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 0.0e+00 1132.9 622 84.9
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 0.0e+00 1127.5 626 85.0
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 0.0e+00 1125.9 622 84.6
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 0.0e+00 1125.2 622 84.4
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 0.0e+00 1122.1 759 73.9
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 0.0e+00 1121.7 622 83.6
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 0.0e+00 1121.3 622 83.9
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 0.0e+00 1119.8 622 83.6
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 0.0e+00 1119.0 622 83.4
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 0.0e+00 1117.8 617 85.3
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 0.0e+00 1114.8 756 73.8
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 0.0e+00 1110.1 620 84.0
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 0.0e+00 1104.7 699 77.0
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 0.0e+00 1100.5 697 76.6
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 0.0e+00 1094.0 618 82.8
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 0.0e+00 1091.3 624 83.3
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 0.0e+00 1090.9 629 81.6
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 0.0e+00 1090.5 618 83.0
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 0.0e+00 1088.6 622 80.4
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 0.0e+00 1085.1 747 71.1
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 0.0e+00 1081.6 616 82.6
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 0.0e+00 1077.8 682 77.4
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 0.0e+00 1077.0 628 81.4
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 0.0e+00 1075.5 742 75.3
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 2.0e-311 1072.0 622 80.2
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 6.1e-311 1070.5 623 79.6
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 7.7e-311 1070.1 723 72.3
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 3.9e-310 1067.8 737 72.0
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 1.9e-309 1065.4 733 71.6
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 2.5e-309 1065.1 620 80.5
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 4.3e-309 1064.3 711 73.7
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 1.2e-308 1062.8 617 81.5
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 1.1e-307 1059.7 634 78.9
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 3.1e-307 1058.1 759 68.6
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 5.8e-306 1053.9 622 78.6
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 1.9e-304 1048.9 745 69.3
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 2.4e-304 1048.5 621 77.8
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 3.9e-302 1041.2 734 70.0
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 1.5e-301 1039.3 621 77.8
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 5.6e-301 1037.3 704 74.0
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 5.6e-301 1037.3 620 77.1
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 5.6e-301 1037.3 709 70.9
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 1.1e-299 1033.1 623 78.8
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 3.8e-297 1024.6 756 67.3
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 8.4e-297 1023.5 621 76.5
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 9.3e-296 1020.0 627 75.1
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 4.6e-295 1017.7 664 71.7
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 5.1e-294 1014.2 710 71.4
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 1.6e-292 1009.2 565 83.5
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 2.8e-292 1008.4 652 74.4
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 6.9e-291 1003.8 625 75.0
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 5.8e-290 1000.7 711 69.3
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 1.3e-289 999.6 711 69.2
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 3.8e-289 998.0 793 67.6
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 8.4e-289 996.9 623 74.5
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 2.4e-288 995.3 624 74.2
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 2.4e-288 995.3 624 74.2
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 2.4e-288 995.3 624 74.2
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 7.1e-288 993.8 620 74.4
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 7.1e-288 993.8 665 75.8
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 2.1e-287 992.3 619 74.5
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.1e-285 986.5 540 84.6
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 1.4e-283 979.5 623 74.5
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 2.4e-283 978.8 624 73.1
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 4.0e-283 978.0 624 73.1
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 9.0e-283 976.9 624 73.1
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 2.0e-282 975.7 744 66.0
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 9.9e-282 973.4 572 81.1
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 1.7e-281 972.6 724 71.3
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 4.9e-281 971.1 672 69.9
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 8.4e-281 970.3 749 65.7
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 1.1e-280 969.9 621 75.8
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 1.9e-280 969.1 623 71.7
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.9e-280 969.1 704 68.0
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 2.4e-280 968.8 618 73.1
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 9.3e-280 966.8 748 64.8
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 1.3e-278 963.0 715 69.7
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 2.3e-278 962.2 748 64.8
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 3.0e-278 961.8 624 75.2
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 1.5e-277 959.5 625 73.4
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.9e-277 959.1 620 73.1
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 2.5e-277 958.7 620 73.2
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 2.5e-277 958.7 706 67.8
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.1e-275 953.4 749 64.8
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 1.1e-272 943.3 620 68.9
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 7.1e-272 940.6 640 69.5
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 1.1e-269 933.3 624 70.2
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 2.8e-268 928.7 674 70.3
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 5.0e-265 917.9 719 64.0
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 5.9e-258 894.4 757 61.2
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 2.9e-257 892.1 612 70.1
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.0e-254 882.1 791 58.9
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.6e-253 879.0 730 62.3
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 4.1e-251 871.7 704 62.8
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 9.7e-245 850.5 624 63.0
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.0e-241 840.5 621 64.7
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 1.0e-241 840.5 624 66.7
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.0e-241 840.5 716 61.9
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 3.3e-237 825.5 643 60.3
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.2e-234 817.0 763 57.7
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 1.0e-233 813.9 622 60.1
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 1.9e-232 809.7 532 74.6
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 1.2e-229 800.4 647 59.5
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 9.1e-227 790.8 621 60.1
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 5.9e-226 788.1 554 66.8
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 1.0e-225 787.3 662 62.4
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 1.3e-212 743.8 570 67.0
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 6.4e-212 741.5 766 54.2
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 1.1e-206 724.2 538 63.2
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 9.2e-203 711.1 623 58.6
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 9.5e-200 701.0 513 68.2
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 1.6e-199 700.3 622 57.9
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 7.5e-197 691.4 560 67.5
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 2.1e-194 683.3 463 73.9
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 1.7e-193 680.2 520 67.5
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 3.8e-188 662.5 433 71.8
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.1e-183 646.7 561 60.6
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 8.1e-183 644.8 428 71.0
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 6.9e-182 641.7 423 70.2
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 7.6e-181 638.3 429 69.9
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.3e-180 637.5 423 70.0
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 1.3e-175 620.9 656 48.9
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 1.2e-162 577.8 712 43.3
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.0e-148 531.6 428 61.4
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 5.0e-148 529.3 634 42.6
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 4.8e-143 512.7 659 42.2
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 7.7e-141 505.4 429 59.0
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 7.7e-133 478.8 621 41.4
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 3.1e-126 456.8 319 65.5
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.8e-116 423.3 434 50.5
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 1.2e-106 391.7 226 80.5
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 4.6e-101 373.2 189 89.9
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 1.8e-97 361.3 192 83.9
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 2.6e-96 357.5 183 89.6
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.8e-90 337.4 169 90.5
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 6.6e-84 316.2 197 72.6
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.1e-81 308.9 185 75.1
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 5.2e-81 306.6 185 74.1
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 6.6e-76 289.7 185 72.4
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 4.3e-75 287.0 156 80.8
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.0e-68 265.8 136 86.0
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 6.6e-68 263.1 169 72.2
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 5.3e-57 226.9 151 68.9
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.8e-52 211.8 103 89.3
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 3.0e-52 211.1 272 48.2
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 3.0e-44 184.5 113 76.1
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 1.9e-43 181.8 84 95.2
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 9.0e-41 172.9 111 72.1
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 7.2e-38 163.3 101 77.2
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 5.9e-32 143.7 79 79.7
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 3.0e-28 131.3 115 52.2
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 3.3e-27 127.9 75 76.0
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 4.8e-26 124.0 72 77.8
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 1.1e-25 122.9 72 73.6
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 4.1e-25 120.9 148 47.3
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 5.0e-23 114.0 85 62.4
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 8.5e-15 86.7 50 74.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 1.1e-14 86.3 51 78.4
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 4.0e-12 77.8 44 81.8
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 3.3e-11 74.7 44 75.0
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 1.7e-07 62.4 293 25.9
CANSAT11G0752 Cannabis sativa HOM05D005961 ORTHO05D007391 2.2e-07 62.0 310 23.9
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 3.8e-07 61.2 222 23.0
HanXRQChr08g0221231 Helianthus annuus HOM05D001260 ORTHO05D004134 5.0e-07 60.8 285 22.5
Rhsim11G0125000 Rhododendron simsii HOM05D004134 ORTHO05D339485 1.1e-06 59.7 62 53.2
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 1.9e-06 58.9 228 24.1
Sp6g17980 Schrenkiella parvula HOM05D005961 ORTHO05D007391 1.9e-06 58.9 164 27.4
QL05p027149 Quercus lobata HOM05D003006 ORTHO05D003438 5.5e-06 57.4 258 25.6


User provided reference genes

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