Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1385.2 714 100.0
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1236.9 714 89.9
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1225.3 714 89.5
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1224.5 714 89.4
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1221.5 714 89.1
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1197.6 714 87.1
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1197.2 714 86.3
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1195.6 714 86.3
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1195.3 715 86.7
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1191.0 705 87.2
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1184.5 714 85.7
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1182.9 717 85.8
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1181.8 716 85.9
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1180.6 714 85.0
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1176.4 698 87.2
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1176.0 742 83.3
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1175.6 725 85.2
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1174.1 705 85.8
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1172.1 714 84.5
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1171.4 714 85.0
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1169.8 710 85.4
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1169.8 714 84.2
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1166.8 714 83.9
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1166.0 711 85.5
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1164.4 714 84.0
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1161.4 714 84.0
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1160.2 737 82.9
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1160.2 706 84.1
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1160.2 707 84.0
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1159.8 694 86.2
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1159.1 714 84.0
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 697 85.5
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1156.0 697 85.4
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1155.6 697 85.4
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1152.1 714 83.1
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1151.7 714 84.5
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1150.2 709 84.2
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 709 82.9
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 701 85.2
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1147.9 737 81.3
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1146.7 704 85.1
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1146.3 698 84.7
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1145.2 677 87.4
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1144.0 699 84.3
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 696 84.5
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 696 84.5
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 696 84.5
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 697 84.4
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1142.5 711 82.7
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1142.5 713 84.0
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1138.6 715 82.9
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1137.9 700 84.3
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1137.1 711 83.1
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1135.9 697 83.9
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1135.6 715 82.0
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1130.2 712 80.8
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1129.0 697 83.9
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1128.6 694 84.1
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1127.9 694 84.1
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1125.5 714 80.3
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1125.5 711 80.7
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1125.5 711 80.7
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1125.2 714 80.5
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1123.2 699 82.1
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1122.8 711 80.7
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1122.8 711 80.5
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1122.8 711 80.5
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1122.8 714 79.8
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1122.1 715 82.5
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1121.7 714 81.9
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1121.3 698 84.8
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1120.9 712 80.6
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1119.4 700 83.1
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1117.8 733 80.9
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1115.9 716 82.3
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1115.1 718 82.3
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1112.1 714 80.0
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1111.7 674 84.1
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1110.9 700 82.3
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1109.4 715 80.4
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1107.8 701 82.9
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1104.0 714 79.1
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1098.6 699 80.0
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1097.4 696 81.6
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1095.9 774 75.7
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1095.5 726 79.6
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1092.8 744 77.2
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1087.0 692 81.9
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1086.2 698 80.2
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1082.8 700 78.1
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1079.7 698 78.8
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 0.0e+00 1075.1 688 80.5
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 9.8e-312 1072.8 756 74.2
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.2e-308 1062.8 672 82.7
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 8.5e-307 1056.6 703 77.5
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 7.2e-306 1053.5 744 75.5
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 4.5e-300 1034.2 712 75.7
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 5.0e-299 1030.8 696 76.6
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 5.9e-292 1007.3 743 70.5
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.0e-279 965.7 597 83.1
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 9.8e-279 963.4 711 69.8
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 9.8e-279 963.4 711 69.8
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 1.7e-278 962.6 637 77.9
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.7e-278 961.4 637 80.4
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.8e-272 942.6 590 80.0
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.7e-270 936.0 711 66.5
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 3.4e-263 911.8 693 67.2
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 1.3e-262 909.8 700 67.7
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 4.1e-261 904.8 689 71.6
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.2e-260 903.3 595 79.8
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 2.1e-260 902.5 572 79.2
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 7.3e-258 894.0 560 82.3
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 3.4e-255 885.2 518 87.1
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.6e-244 849.7 680 67.9
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.5e-239 831.6 499 85.4
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 6.5e-222 774.6 686 57.6
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 3.2e-213 745.7 686 55.5
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 4.2e-197 692.2 447 78.5
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.1e-194 684.1 470 78.3
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 7.3e-157 558.5 734 44.4
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 8.3e-153 545.0 327 81.0
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 9.2e-144 515.0 774 37.7
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 9.6e-133 478.4 285 84.6
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.1e-131 474.9 276 86.2
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 2.9e-121 440.3 275 82.2
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 2.8e-116 423.7 361 60.9
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 2.0e-114 417.5 757 35.4
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 4.9e-113 412.9 259 79.5
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.7e-108 396.7 243 85.2
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.8e-108 396.4 261 81.2
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.4e-104 384.8 239 80.3
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.1e-103 380.9 251 80.1
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.7e-79 300.8 174 81.0
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 1.3e-76 292.0 193 81.3
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.9e-72 278.1 221 67.4
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.5e-72 277.7 195 74.4
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.6e-71 273.9 148 87.2
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 4.4e-61 240.4 192 70.8
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-59 235.7 155 67.1
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 4.3e-56 223.8 156 71.8
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 8.0e-55 219.5 173 71.7
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 3.7e-52 210.7 180 67.2
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 4.9e-52 210.3 223 56.5
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 8.6e-49 199.5 488 28.7
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.8e-46 191.8 122 82.0
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.8e-46 191.8 113 88.5
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 5.4e-43 180.3 111 90.1
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 1.8e-38 165.2 106 81.1
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 2.9e-36 157.9 110 73.6
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 7.3e-32 143.3 100 73.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 8.9e-30 136.3 100 70.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 8.9e-30 136.3 100 70.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 2.2e-28 131.7 141 54.6
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.9e-25 120.9 81 75.3
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 4.3e-24 117.5 73 83.6
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 8.9e-22 109.8 127 51.2
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 1.5e-21 109.0 63 81.0
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 3.4e-21 107.8 69 73.9
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 3.4e-21 107.8 59 84.7
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.2e-20 105.1 75 73.3
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.4e-20 103.6 57 86.0
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.9e-19 102.1 60 78.3
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.9e-16 92.0 93 54.8
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 2.4e-14 85.1 65 69.2
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 4.5e-13 80.9 61 68.9
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 1.9e-11 75.5 78 48.7
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.2e-10 72.8 46 73.9
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 1.1e-08 66.2 40 82.5
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 9.6e-08 63.2 61 55.7


User provided reference genes

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