Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 4.0e-131 471.5 241 100.0
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 4.5e-111 404.8 241 84.6
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 8.6e-110 400.6 241 84.2
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 3.3e-109 398.7 241 84.2
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 1.3e-105 386.7 235 83.0
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 1.2e-103 380.2 237 81.4
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 8.6e-102 374.0 240 77.9
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 1.1e-101 373.6 241 79.3
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.5e-101 373.2 240 77.1
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 6.2e-100 367.9 237 78.9
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 1.4e-99 366.7 241 77.2
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 1.4e-99 366.7 241 77.2
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.4e-99 366.7 241 75.5
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 2.3e-99 365.9 240 78.3
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 3.1e-99 365.5 240 75.4
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 4.0e-99 365.2 241 76.3
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 5.2e-99 364.8 241 75.1
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 6.8e-99 364.4 241 77.2
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 6.8e-99 364.4 234 79.1
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 8.9e-99 364.0 237 77.6
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 1.5e-98 363.2 239 76.6
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 2.6e-98 362.5 241 75.9
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 4.4e-98 361.7 241 74.7
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 5.8e-98 361.3 241 75.5
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 1.3e-97 360.1 241 75.5
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 3.7e-97 358.6 241 75.5
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 6.4e-97 357.8 234 76.1
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 6.4e-97 357.8 236 76.7
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 6.4e-97 357.8 240 75.4
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 8.3e-97 357.5 236 74.2
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 8.3e-97 357.5 240 75.4
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 8.3e-97 357.5 241 75.1
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 1.1e-96 357.1 241 73.4
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 1.4e-96 356.7 241 75.1
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 4.1e-96 355.1 241 75.5
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 9.2e-96 354.0 241 73.9
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 9.2e-96 354.0 239 74.9
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 9.2e-96 354.0 239 74.9
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 1.2e-95 353.6 237 75.5
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 1.2e-95 353.6 249 71.5
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.2e-95 353.6 240 75.0
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 2.7e-95 352.4 241 74.3
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 2.7e-95 352.4 241 72.2
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 4.6e-95 351.7 232 76.3
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 1.7e-94 349.7 274 66.8
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.7e-94 349.7 241 72.6
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 3.0e-94 349.0 241 73.0
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.0e-94 349.0 232 75.4
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.9e-94 348.6 232 75.0
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 5.0e-94 348.2 241 73.4
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 8.6e-94 347.4 232 75.9
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 8.6e-94 347.4 241 73.4
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.1e-93 347.1 232 75.0
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 1.9e-93 346.3 240 74.2
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 5.6e-93 344.7 232 74.6
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 5.6e-93 344.7 241 72.2
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 7.3e-93 344.4 239 71.5
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 7.3e-93 344.4 234 74.4
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 9.5e-93 344.0 233 76.0
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 9.5e-93 344.0 232 74.6
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 1.2e-92 343.6 236 75.0
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 1.2e-92 343.6 232 74.1
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 1.2e-92 343.6 260 69.2
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 6.2e-92 341.3 240 72.1
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 8.1e-92 340.9 239 72.4
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 1.1e-91 340.5 239 71.5
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 1.8e-91 339.7 235 72.8
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.8e-91 339.7 234 73.5
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 3.1e-91 339.0 237 73.4
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 5.2e-91 338.2 212 80.2
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.2e-90 337.0 227 75.3
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 2.0e-90 336.3 228 74.1
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 2.0e-90 336.3 234 73.5
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 2.6e-90 335.9 266 66.2
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 3.4e-90 335.5 231 71.9
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 1.7e-89 333.2 340 55.3
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 3.7e-89 332.0 235 71.1
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 4.9e-89 331.6 233 72.1
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 6.4e-89 331.3 239 72.0
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 6.4e-89 331.3 213 77.5
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 8.3e-89 330.9 241 71.4
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 2.4e-88 329.3 233 71.2
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 3.2e-88 328.9 235 72.3
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 7.1e-88 327.8 232 73.7
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 2.7e-87 325.9 239 69.5
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 2.7e-87 325.9 239 69.5
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 2.7e-87 325.9 239 69.5
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 1.0e-86 323.9 202 81.7
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.3e-86 323.6 239 67.4
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.3e-86 322.8 239 67.4
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 6.6e-86 321.2 287 60.3
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 8.6e-86 320.9 239 68.6
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 1.5e-85 320.1 239 68.6
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 7.3e-85 317.8 241 68.9
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 4.7e-84 315.1 211 74.9
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 6.2e-84 314.7 239 68.2
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 8.1e-84 314.3 199 79.9
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 1.2e-82 310.5 241 67.2
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 1.5e-82 310.1 202 75.7
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 2.0e-82 309.7 239 65.3
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 5.8e-82 308.1 274 60.9
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 3.5e-79 298.9 214 68.7
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 1.3e-78 297.0 199 75.4
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 4.3e-77 292.0 234 66.2
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 8.9e-75 284.3 203 71.4
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 3.2e-72 275.8 190 73.2
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 1.2e-71 273.9 239 61.5
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 2.7e-71 272.7 171 77.8
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 5.4e-64 248.4 167 73.1
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 1.6e-63 246.9 233 57.1
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 2.3e-62 243.0 226 54.4
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 3.0e-62 242.7 232 52.6
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 6.6e-62 241.5 166 72.3
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.3e-60 237.3 149 78.5
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.3e-57 227.3 127 92.1
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 6.4e-57 224.9 145 75.9
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.5e-53 213.8 141 77.3
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.5e-53 213.8 141 77.3
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 9.3e-48 194.5 194 51.0
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 1.1e-45 187.6 128 73.4
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 5.7e-45 185.3 120 77.5
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 9.6e-45 184.5 121 74.4
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 2.1e-44 183.3 120 76.7
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 4.8e-44 182.2 125 72.0
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 1.2e-42 177.6 180 55.6
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 2.0e-42 176.8 122 71.3
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 2.6e-42 176.4 170 57.1
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 7.6e-42 174.9 223 42.2
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 4.6e-39 165.6 134 62.7
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 2.0e-34 150.2 234 40.2
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.6e-34 149.8 129 63.6
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 5.0e-33 145.6 121 68.6
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 1.9e-32 143.7 121 62.0
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 3.2e-32 142.9 143 53.8
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 5.5e-32 142.1 101 74.3
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 2.9e-25 119.8 85 64.7
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 1.4e-24 117.5 177 40.7
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 5.5e-24 115.5 81 71.6
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 6.1e-23 112.1 99 65.7
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.8e-22 110.5 91 58.2
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 2.3e-22 110.2 72 76.4
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 3.3e-21 106.3 235 34.9
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.2e-20 103.6 85 52.9
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 6.3e-20 102.1 89 59.6
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.4e-19 100.1 105 53.3
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 5.3e-19 99.0 54 88.9
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 6.5e-17 92.0 177 33.3
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 2.7e-15 86.7 50 80.0
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 7.5e-13 78.6 66 60.6
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 1.3e-12 77.8 163 38.0
Actinidia19316 Actinidia chinensis HOM05D004647 ORTHO05D005349 2.1e-07 60.5 43 79.1
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 1.0e-06 58.2 37 73.0


User provided reference genes

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