Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008348 Camellia sinensis var. sinensis HOM05D005545 ORTHO05D006917 2.1e-100 369.0 184 100.0
CSS0040259 Camellia sinensis var. sinensis HOM05D005545 ORTHO05D006917 6.1e-100 367.5 184 99.5
Dinv32030 Davidia involucrata HOM05D005545 ORTHO05D006917 3.3e-61 238.8 173 69.9
Actinidia10163 Actinidia chinensis HOM05D005545 ORTHO05D006917 2.3e-54 216.1 171 67.3
Actinidia10168 Actinidia chinensis HOM05D005545 ORTHO05D006917 8.1e-52 207.6 169 65.7
Hma1.2p1_2114F.1_g314270 Hydrangea macrophylla HOM05D005545 ORTHO05D006917 8.1e-52 207.6 178 67.4
Lj9C655T12 Lonicera japonica HOM05D005545 ORTHO05D006917 8.1e-44 181.0 187 56.1
TAR636G1823 Trochodendron aralioides HOM05D005545 ORTHO05D006917 1.1e-43 180.6 179 53.6
Cfa010879 Carpinus fangiana HOM05D005545 ORTHO05D006917 9.0e-43 177.6 177 55.9
Haze_03077 Corylus avellana HOM05D005545 ORTHO05D006917 7.6e-42 174.5 174 55.2
vmacro13750 Vaccinium macrocarpon HOM05D005545 ORTHO05D006917 1.0e-41 174.1 175 57.7
Nn2g14866 Nelumbo nucifera HOM05D005545 ORTHO05D006917 2.2e-41 172.9 179 52.0
Nn7g36650 Nelumbo nucifera HOM05D005545 ORTHO05D006917 2.2e-41 172.9 182 51.1
Lsat_1_v5_gn_1_115460 Lactuca sativa HOM05D005545 ORTHO05D006917 2.5e-40 169.5 185 54.6
GSVIVG01013494001 Vitis vinifera HOM05D005545 ORTHO05D006917 2.5e-40 169.5 174 54.6
Solyc11g005250.3 Solanum lycopersicum HOM05D005545 ORTHO05D006917 1.3e-38 163.7 176 51.7
Sopen11g001260 Solanum pennellii HOM05D005545 ORTHO05D006917 1.3e-38 163.7 176 51.7
Nitab4.5_0003414g0020 Nicotiana tabacum HOM05D005545 ORTHO05D006917 3.0e-38 162.5 181 51.4
Nitab4.5_0000320g0210 Nicotiana tabacum HOM05D005545 ORTHO05D006917 8.7e-38 161.0 181 51.9
Prupe.2G034500 Prunus persica HOM05D005545 ORTHO05D006917 3.3e-37 159.1 181 53.6
MD07G1038300 Malus domestica HOM05D005545 ORTHO05D006917 4.3e-37 158.7 183 52.5
Ciclev10004162m.g Citrus clementina HOM05D005545 ORTHO05D006917 1.3e-36 157.1 174 51.1
QL04p018188 Quercus lobata HOM05D005545 ORTHO05D006917 1.6e-36 156.8 184 51.1
QL04p014793 Quercus lobata HOM05D005545 ORTHO05D006917 2.1e-36 156.4 184 50.5
CiPaw.13G013000 Carya illinoinensis HOM05D005545 ORTHO05D006917 2.8e-36 156.0 174 51.7
Cc00_g05310 Coffea canephora HOM05D005545 ORTHO05D006917 4.8e-36 155.2 168 54.2
DCAR_003247 Daucus carota HOM05D005545 ORTHO05D006917 4.8e-36 155.2 174 51.1
ClCG05G026770 Citrullus lanatus HOM05D005545 ORTHO05D006917 6.2e-36 154.8 201 45.8
Lalb_Chr04g0264091 Lupinus albus HOM05D005545 ORTHO05D006917 6.2e-36 154.8 183 46.4
Carub.0005s2108 Capsella rubella HOM05D005545 ORTHO05D006917 1.8e-35 153.3 204 44.6
COL.COLO4_21694 Corchorus olitorius HOM05D005545 ORTHO05D006917 1.8e-35 153.3 174 49.4
TWI63G0062 Tripterygium wilfordii HOM05D005545 ORTHO05D006917 2.4e-35 152.9 178 50.6
Atru.chr12.1348 Acer truncatum HOM05D005545 ORTHO05D006917 5.3e-35 151.8 184 47.8
Sed0011144 Sechium edule HOM05D005545 ORTHO05D006917 9.0e-35 151.0 194 48.5
AT3G54460 Arabidopsis thaliana HOM05D005545 ORTHO05D006917 2.6e-34 149.4 203 45.3
MD02G1288500 Malus domestica HOM05D005545 ORTHO05D006917 5.8e-34 148.3 182 48.4
Thhalv10010067m.g Eutrema salsugineum HOM05D005545 ORTHO05D006917 7.6e-34 147.9 212 42.5
Thecc.10G162000 Theobroma cacao HOM05D005545 ORTHO05D006917 1.0e-33 147.5 168 47.6
SalBow5G5421 Salvia bowleyana HOM05D005545 ORTHO05D006917 1.7e-33 146.7 175 46.9
Manes.04G160000 Manihot esculenta HOM05D005545 ORTHO05D006917 2.2e-33 146.4 167 49.1
PGR044G1070 Punica granatum HOM05D005545 ORTHO05D006917 2.9e-33 146.0 220 41.4
AL5G35510 Arabidopsis lyrata HOM05D005545 ORTHO05D006917 5.0e-33 145.2 198 43.4
MSTRG.20517 Avicennia marina HOM05D005545 ORTHO05D006917 5.0e-33 145.2 178 46.6
HanXRQChr11g0341811 Helianthus annuus HOM05D005545 ORTHO05D006917 1.1e-32 144.1 182 48.4
Ca_19084_v3 Cicer arietinum L. HOM05D005545 ORTHO05D006917 1.4e-32 143.7 176 48.9
Rhsim07G0066900 Rhododendron simsii HOM05D005545 ORTHO05D006917 1.4e-32 143.7 192 50.0
CsaV3_5G036710 Cucumis sativus L. HOM05D005545 ORTHO05D006917 1.9e-32 143.3 198 44.9
MELO3C012467.2 Cucumis melo HOM05D005545 ORTHO05D006917 4.2e-32 142.1 198 43.4
Oeu040901.1 Olea europaea HOM05D005545 ORTHO05D006917 9.3e-32 141.0 181 43.6
arahy.Tifrunner.gnm1.ann1.3MZP5F Arachis hypogaea HOM05D005545 ORTHO05D006917 2.1e-31 139.8 177 45.2
Sp5g07960 Schrenkiella parvula HOM05D005545 ORTHO05D006917 2.7e-31 139.4 213 40.8
Glyma.11G154800 Glycine max HOM05D005545 ORTHO05D006917 3.5e-31 139.0 176 44.9
Aa31sc35G110 Aethionema arabicum HOM05D005545 ORTHO05D006917 4.6e-31 138.7 211 39.8
arahy.Tifrunner.gnm1.ann1.598UNF Arachis hypogaea HOM05D005545 ORTHO05D006917 4.6e-31 138.7 178 44.4
THA.LOC104824192 Tarenaya hassleriana HOM05D005545 ORTHO05D006917 6.1e-31 138.3 201 40.8
Sabra03G0147100 Salix brachista HOM05D005545 ORTHO05D006917 7.9e-31 137.9 192 44.3
Duzib114G0439 Durio zibethinus HOM05D005545 ORTHO05D006917 1.0e-30 137.5 166 46.4
Gohir.D04G014900 Gossypium hirsutum HOM05D005545 ORTHO05D006917 1.3e-30 137.1 167 47.9
Gorai.012G017400 Gossypium raimondii HOM05D005545 ORTHO05D006917 1.3e-30 137.1 167 47.9
SGA_v2.0_scaffold319G48544 Striga asiatica HOM05D005545 ORTHO05D006917 1.8e-30 136.7 175 44.0
FAN03G2070 Fragaria x ananassa HOM05D005545 ORTHO05D006917 2.3e-30 136.3 182 49.5
Phvul.005G027400 Phaseolus vulgaris HOM05D005545 ORTHO05D006917 2.3e-30 136.3 175 46.9
arahy.Tifrunner.gnm1.ann1.HR7PRR Arachis hypogaea HOM05D005545 ORTHO05D006917 3.0e-30 136.0 176 44.3
Glyma.04G138300 Glycine max HOM05D005545 ORTHO05D006917 3.0e-30 136.0 176 43.8
Hund15735 Selenicereus undatus HOM05D005545 ORTHO05D006917 3.0e-30 136.0 177 46.9
VMungo1080G1303 Vigna mungo HOM05D005545 ORTHO05D006917 3.0e-30 136.0 177 46.3
Aqoxy2G00348 Aquilegia oxysepala HOM05D005545 ORTHO05D006917 5.1e-30 135.2 176 42.0
BraA04t16237Z Brassica rapa HOM05D005545 ORTHO05D006917 5.1e-30 135.2 180 43.3
CAN.G1074.9 Capsicum annuum HOM05D005545 ORTHO05D006917 6.7e-30 134.8 182 49.5
CDE12G0276 Ceratophyllum demersum HOM05D005545 ORTHO05D006917 8.7e-30 134.4 179 44.1
SGA_v2.0_scaffold124G33619 Striga asiatica HOM05D005545 ORTHO05D006917 1.5e-29 133.7 170 42.9
A04p05370 Brassica napus HOM05D005545 ORTHO05D006917 3.3e-29 132.5 180 42.8
BolC4t25380H Brassica oleracea HOM05D005545 ORTHO05D006917 7.4e-29 131.3 193 42.5
Psat5g217720 Pisum sativum HOM05D005545 ORTHO05D006917 7.4e-29 131.3 173 45.7
RcHm_v2.0_Chr1g0323901 Rosa chinensis HOM05D005545 ORTHO05D006917 7.4e-29 131.3 177 48.6
Potri.T125006 Populus trichocarpa HOM05D005545 ORTHO05D006917 1.6e-28 130.2 193 44.6
FAN06G4324 Fragaria x ananassa HOM05D005545 ORTHO05D006917 2.2e-28 129.8 179 47.5
TPR.G17827 Trifolium pratense HOM05D005545 ORTHO05D006917 2.2e-28 129.8 174 44.3
Potri.003G197701 Populus trichocarpa HOM05D005545 ORTHO05D006917 2.8e-28 129.4 193 44.0
BcaC02g09068 Brassica carinata HOM05D005545 ORTHO05D006917 4.8e-28 128.6 193 42.5
C04p38060 Brassica napus HOM05D005545 ORTHO05D006917 4.8e-28 128.6 193 42.5
Medtr3g017390 Medicago truncatula HOM05D005545 ORTHO05D006917 1.1e-27 127.5 172 43.0
PSO384G2575 Papaver somniferum HOM05D005545 ORTHO05D006917 5.3e-27 125.2 177 41.8
Migut.B01225 Erythranthe guttata HOM05D005545 ORTHO05D006917 1.5e-26 123.6 172 40.7
HPP92_001016 Vanilla planifolia HOM05D005545 ORTHO05D006917 2.0e-26 123.2 172 41.9
CANSAT56G1029 Cannabis sativa HOM05D005545 ORTHO05D006917 2.6e-26 122.9 190 41.6
Ah.12g062880 Amaranthus hybridus HOM05D005545 ORTHO05D006917 1.7e-25 120.2 179 39.7
CAN.G694.97 Capsicum annuum HOM05D001043 ORTHO05D001555 2.2e-25 119.8 205 43.4
Sc10g0004410 Simmondsia chinensis HOM05D005545 ORTHO05D006917 5.0e-25 118.6 169 42.0
ATR0745G085 Amborella trichopoda HOM05D005545 ORTHO05D006917 9.4e-24 114.4 172 37.2
SHI03991 Sapria himalayana HOM05D005545 ORTHO05D006917 6.1e-23 111.7 165 44.8
EL10Ac2g02815 Beta vulgaris HOM05D005545 ORTHO05D006917 1.4e-22 110.5 179 43.0
Peaxi162Scf00025g01520 Petunia axillaris HOM05D005545 ORTHO05D006917 1.5e-21 107.1 79 68.4
Lj3g0017403 Lotus japonicus HOM05D005545 ORTHO05D006917 3.7e-20 102.4 176 39.8
AUR62037185 Chenopodium quinoa HOM05D005545 ORTHO05D006917 4.8e-20 102.1 180 37.8
CARHR164360 Cardamine hirsuta HOM05D005545 ORTHO05D006917 6.9e-19 98.2 73 63.0
unitig_749.g13482 Utricularia gibba HOM05D005545 ORTHO05D006917 4.4e-13 79.0 82 48.8
Os01g0952200 Oryza sativa ssp. japonica HOM05D005545 ORTHO05D006917 7.0e-11 71.6 87 48.3
Zm00001eb140820 Zea mays HOM05D005545 ORTHO05D006917 1.3e-09 67.4 75 45.3
Zm00001eb140840 Zea mays HOM05D005545 ORTHO05D006917 3.8e-09 65.9 78 43.6
AUR62026877 Chenopodium quinoa HOM05D005545 ORTHO05D006917 5.5e-08 62.0 60 55.0
Eucgr.J01185 Eucalyptus grandis HOM05D005545 ORTHO05D006917 1.2e-07 60.8 185 30.8


User provided reference genes

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