Gene: Sopen11g001260

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g001260
  • Transcript Identifier Sopen11g001260.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 225061-231083 : negative

Gene Family Information

  • ID HOM05D005545
  • #Genes/#Species 138/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g001260.1

Descriptions

  • Description SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein | FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding | LOCATED IN: endomembrane system | CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like , Zinc finger, RING-type, conserved site , Zinc finger, RING-type , SNF2-related , F-box domain, Skp2-like , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain , Zinc finger, CW-type | BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
InterProzinc ion binding
GO:0005515
IEA
InterProprotein binding
GO:0005524
IEA
InterProATP binding
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G54460

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011124 Zinc finger, CW-type
IPR001810 F-box domain
IPR001650 Helicase, C-terminal
IPR000330 SNF2, N-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR036047 F-box-like domain superfamily
IPR038718 SNF2-like, N-terminal domain superfamily
Mapman id Description
12.4.8.2.1 Chromatin organisation.nucleosome remodeling.other chromatin remodeling activities.SSO1653-like group.chromatin remodeling factor (SHPRH)