Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008275 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 2.3e-60 235.3 117 100.0
Actinidia20662 Actinidia chinensis HOM05D003957 ORTHO05D004833 1.3e-42 176.4 113 78.8
Dinv09346 Davidia involucrata HOM05D003957 ORTHO05D004833 3.5e-40 168.3 113 74.3
vmacro21189 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 2.3e-36 155.6 113 70.8
Thecc.01G409500 Theobroma cacao HOM05D003957 ORTHO05D004833 1.4e-33 146.4 106 67.0
Rhsim01G0129100 Rhododendron simsii HOM05D003957 ORTHO05D004833 1.8e-33 146.0 113 68.1
Peaxi162Scf00953g00417 Petunia axillaris HOM05D003957 ORTHO05D004833 2.7e-32 142.1 112 65.2
Lj7A573G28 Lonicera japonica HOM05D003957 ORTHO05D004833 7.8e-32 140.6 114 64.9
MSTRG.20577 Avicennia marina HOM05D003957 ORTHO05D004833 2.9e-31 138.7 113 61.9
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 5.0e-31 137.9 112 65.2
SGA_v2.0_scaffold119G32740 Striga asiatica HOM05D003957 ORTHO05D004833 6.6e-31 137.5 113 61.1
Migut.B01290 Erythranthe guttata HOM05D003957 ORTHO05D004833 2.5e-30 135.6 113 59.3
Atru.chr11.2608 Acer truncatum HOM05D003957 ORTHO05D004833 4.3e-30 134.8 113 60.2
Oeu014587.1 Olea europaea HOM05D003957 ORTHO05D004833 5.6e-30 134.4 112 58.9
Duzib138G0145 Durio zibethinus HOM05D003957 ORTHO05D004833 9.5e-30 133.7 106 62.3
CiPaw.14G000800 Carya illinoinensis HOM05D003957 ORTHO05D004833 1.6e-29 132.9 112 62.5
Ciclev10031578m.g Citrus clementina HOM05D003957 ORTHO05D004833 2.8e-29 132.1 113 60.2
QL04p008303 Quercus lobata HOM05D003957 ORTHO05D004833 2.8e-29 132.1 113 63.7
SalBow5G1725 Salvia bowleyana HOM05D003957 ORTHO05D004833 2.8e-29 132.1 113 60.2
SalBow5G3453 Salvia bowleyana HOM05D003957 ORTHO05D004833 2.8e-29 132.1 113 60.2
PGR044G1355 Punica granatum HOM05D003957 ORTHO05D004833 1.4e-28 129.8 113 61.1
Gorai.004G171700 Gossypium raimondii HOM05D003957 ORTHO05D004833 4.0e-28 128.3 106 59.4
MBI02_g05667_MAGBIO Magnolia biondii HOM05D003957 ORTHO05D004833 5.2e-28 127.9 113 58.4
Sopen01g034330 Solanum pennellii HOM05D003957 ORTHO05D004833 6.8e-28 127.5 112 61.6
PGSC0003DMG400006795 Solanum tuberosum HOM05D003957 ORTHO05D004833 6.8e-28 127.5 112 61.6
COL.COLO4_04863 Corchorus olitorius HOM05D003957 ORTHO05D004833 1.5e-27 126.3 107 62.6
Gohir.D13G107450 Gossypium hirsutum HOM05D003957 ORTHO05D004833 1.5e-27 126.3 104 60.6
Solyc01g087290.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 2.6e-27 125.6 112 60.7
Cc07_g18910 Coffea canephora HOM05D003957 ORTHO05D004833 3.4e-27 125.2 113 57.5
Cfa010778 Carpinus fangiana HOM05D003957 ORTHO05D004833 4.4e-27 124.8 113 58.4
AUR62009393 Chenopodium quinoa HOM05D003957 ORTHO05D004833 4.4e-27 124.8 113 54.9
Gorai.007G239900 Gossypium raimondii HOM05D003957 ORTHO05D004833 4.4e-27 124.8 104 60.6
HanXRQChr01g0016501 Helianthus annuus HOM05D003957 ORTHO05D004833 4.4e-27 124.8 113 57.5
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 1.7e-26 122.9 113 54.9
Lsat_1_v5_gn_1_106241 Lactuca sativa HOM05D003957 ORTHO05D004833 1.7e-26 122.9 114 54.4
Nn2g15304 Nelumbo nucifera HOM05D003957 ORTHO05D004833 1.7e-26 122.9 113 56.6
Eucgr.J01212 Eucalyptus grandis HOM05D003957 ORTHO05D004833 2.2e-26 122.5 113 57.5
GSVIVG01032128001 Vitis vinifera HOM05D003957 ORTHO05D004833 2.2e-26 122.5 87 69.0
Glyma.05G135100 Glycine max HOM05D003957 ORTHO05D004833 8.3e-26 120.6 113 56.6
Glyma.08G090300 Glycine max HOM05D003957 ORTHO05D004833 1.9e-25 119.4 113 55.8
Potri.001G264900 Populus trichocarpa HOM05D003957 ORTHO05D004833 1.9e-25 119.4 118 55.1
Ca_19580_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.4e-25 119.0 112 56.2
Hund21483 Selenicereus undatus HOM05D003957 ORTHO05D004833 3.2e-25 118.6 111 53.2
Sabra16G0162800 Salix brachista HOM05D003957 ORTHO05D004833 1.2e-24 116.7 118 53.4
Cfa010780 Carpinus fangiana HOM05D003957 ORTHO05D004833 1.0e-23 113.6 111 54.1
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 1.0e-23 113.6 88 64.8
Sed0014830 Sechium edule HOM05D003957 ORTHO05D004833 1.0e-23 113.6 113 54.9
TWI09G1258 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 1.0e-23 113.6 102 60.8
arahy.Tifrunner.gnm1.ann1.X54W53 Arachis hypogaea HOM05D003957 ORTHO05D004833 1.7e-23 112.8 115 55.7
ClCG10G012310 Citrullus lanatus HOM05D003957 ORTHO05D004833 2.3e-23 112.5 113 57.5
CANSAT80G0271 Cannabis sativa HOM05D003957 ORTHO05D004833 3.9e-23 111.7 104 56.7
MELO3C023982.2 Cucumis melo HOM05D003957 ORTHO05D004833 3.9e-23 111.7 113 57.5
CsaV3_3G032090 Cucumis sativus L. HOM05D003957 ORTHO05D004833 3.9e-23 111.7 113 57.5
CAN.G219.36 Capsicum annuum HOM05D003957 ORTHO05D004833 5.0e-23 111.3 103 57.3
arahy.Tifrunner.gnm1.ann1.MG259H Arachis hypogaea HOM05D003957 ORTHO05D004833 6.6e-23 110.9 110 56.4
Gohir.D04G098500 Gossypium hirsutum HOM05D003957 ORTHO05D004833 1.1e-22 110.2 85 65.9
Lalb_Chr01g0000371 Lupinus albus HOM05D003957 ORTHO05D004833 3.3e-22 108.6 119 53.8
Sabra09G0044100 Salix brachista HOM05D003957 ORTHO05D004833 4.3e-22 108.2 118 51.7
Gorai.009G400700 Gossypium raimondii HOM05D003957 ORTHO05D004833 7.3e-22 107.5 86 64.0
ECA248G0218 Erigeron canadensis HOM05D003957 ORTHO05D004833 2.1e-21 105.9 88 61.4
Medtr4g037515 Medicago truncatula HOM05D003957 ORTHO05D004833 2.8e-21 105.5 115 51.3
TPR.G3690 Trifolium pratense HOM05D003957 ORTHO05D004833 3.6e-21 105.1 97 58.8
VMungo1127G1153 Vigna mungo HOM05D003957 ORTHO05D004833 6.2e-21 104.4 113 52.2
Cpa.g.sc125.12 Carica papaya HOM05D003957 ORTHO05D004833 8.0e-21 104.0 58 81.0
FAN06G1255 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.1e-20 103.6 106 53.8
Phvul.011G009800 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 1.1e-20 103.6 113 50.4
CiPaw.13G005800 Carya illinoinensis HOM05D003957 ORTHO05D004833 1.4e-20 103.2 83 62.7
CSS0035789 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 2.3e-20 102.4 56 85.7
FAN10G3195 Fragaria x ananassa HOM05D003957 ORTHO05D004833 4.0e-20 101.7 106 55.7
Gohir.A08G143700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 4.0e-20 101.7 55 81.8
Manes.10G140900 Manihot esculenta HOM05D003957 ORTHO05D004833 4.0e-20 101.7 55 83.6
arahy.Tifrunner.gnm1.ann1.74EFZ5 Arachis hypogaea HOM05D003957 ORTHO05D004833 5.2e-20 101.3 56 83.9
arahy.Tifrunner.gnm1.ann1.N7MVRX Arachis hypogaea HOM05D003957 ORTHO05D004833 5.2e-20 101.3 56 83.9
PSO339G1767 Papaver somniferum HOM05D003957 ORTHO05D004833 5.2e-20 101.3 94 52.1
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 8.9e-20 100.5 70 70.0
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 8.9e-20 100.5 70 70.0
Glyma.10G089600 Glycine max HOM05D003957 ORTHO05D004833 8.9e-20 100.5 56 83.9
Gohir.D08G164700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 8.9e-20 100.5 55 81.8
ATR0332G004 Amborella trichopoda HOM05D003957 ORTHO05D004833 1.2e-19 100.1 113 50.4
FAN03G2622 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.2e-19 100.1 106 54.7
Psat5g208720 Pisum sativum HOM05D003957 ORTHO05D004833 1.2e-19 100.1 56 83.9
VMungo1080G1779 Vigna mungo HOM05D003957 ORTHO05D004833 1.2e-19 100.1 61 77.0
Lalb_Chr25g0282971 Lupinus albus HOM05D003957 ORTHO05D004833 1.5e-19 99.8 56 82.1
Medtr3g030890 Medicago truncatula HOM05D003957 ORTHO05D004833 1.5e-19 99.8 52 88.5
Lj3g0013934 Lotus japonicus HOM05D003957 ORTHO05D004833 2.6e-19 99.0 113 50.4
Zm00001eb087020 Zea mays HOM05D003957 ORTHO05D004833 2.6e-19 99.0 55 80.0
Lj3g0028128 Lotus japonicus HOM05D003957 ORTHO05D004833 4.4e-19 98.2 52 86.5
Aqoxy1G00278 Aquilegia oxysepala HOM05D003957 ORTHO05D004833 9.8e-19 97.1 118 45.8
Sp5g26390 Schrenkiella parvula HOM05D003957 ORTHO05D004833 9.8e-19 97.1 67 64.2
TPR.G35301 Trifolium pratense HOM05D003957 ORTHO05D004833 9.8e-19 97.1 52 84.6
Thhalv10023495m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 1.3e-18 96.7 57 71.9
THA.LOC104809852 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 1.7e-18 96.3 58 74.1
Potri.009G059900 Populus trichocarpa HOM05D003957 ORTHO05D004833 2.2e-18 95.9 55 78.2
BcaC08g46558 Brassica carinata HOM05D003957 ORTHO05D004833 2.9e-18 95.5 61 68.9
Pp3s97_50 Physcomitrium patens HOM05D003957 ORTHO05D004833 2.9e-18 95.5 76 57.9
AL5G46370 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 3.7e-18 95.1 57 71.9
BcaB03g14880 Brassica carinata HOM05D003957 ORTHO05D004833 3.7e-18 95.1 57 71.9
SEGI_24417 Sequoiadendron giganteum HOM05D003957 ORTHO05D004833 3.7e-18 95.1 51 84.3
DCAR_003217 Daucus carota HOM05D003957 ORTHO05D004833 4.9e-18 94.7 56 75.0
Aa31LG11G7420 Aethionema arabicum HOM05D003957 ORTHO05D004833 6.4e-18 94.4 58 74.1
AT3G63510 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 6.4e-18 94.4 57 71.9
MD02G1308500 Malus domestica HOM05D003957 ORTHO05D004833 6.4e-18 94.4 54 81.5
HPP92_013484 Vanilla planifolia HOM05D003957 ORTHO05D004833 6.4e-18 94.4 90 53.3
C06p45340 Brassica napus HOM05D003957 ORTHO05D004833 1.1e-17 93.6 52 76.9
C07p38840 Brassica napus HOM05D003957 ORTHO05D004833 1.1e-17 93.6 58 74.1
BolC6t39590H Brassica oleracea HOM05D003957 ORTHO05D004833 1.1e-17 93.6 52 76.9
BolC7t44403H Brassica oleracea HOM05D003957 ORTHO05D004833 1.1e-17 93.6 58 74.1
BraA07t31319Z Brassica rapa HOM05D003957 ORTHO05D004833 1.1e-17 93.6 52 76.9
FvH4_7g01180 Fragaria vesca HOM05D003957 ORTHO05D004833 1.1e-17 93.6 54 79.6
BcaC06g30833 Brassica carinata HOM05D003957 ORTHO05D004833 1.4e-17 93.2 56 75.0
A06p39430 Brassica napus HOM05D003957 ORTHO05D004833 1.4e-17 93.2 58 74.1
BraA06t26858Z Brassica rapa HOM05D003957 ORTHO05D004833 1.4e-17 93.2 58 74.1
CARHR184310 Cardamine hirsuta HOM05D003957 ORTHO05D004833 1.4e-17 93.2 58 74.1
Thhalv10004383m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 1.4e-17 93.2 58 74.1
RcHm_v2.0_Chr1g0316511 Rosa chinensis HOM05D003957 ORTHO05D004833 1.4e-17 93.2 54 79.6
AT5G47970 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 1.9e-17 92.8 58 72.4
A07p37580 Brassica napus HOM05D003957 ORTHO05D004833 1.9e-17 92.8 57 70.2
AL8G20240 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 2.4e-17 92.4 58 72.4
Carub.0008s0751 Capsella rubella HOM05D003957 ORTHO05D004833 2.4e-17 92.4 58 72.4
Prupe.2G015300 Prunus persica HOM05D003957 ORTHO05D004833 3.2e-17 92.0 54 79.6
MD07G1012900 Malus domestica HOM05D003957 ORTHO05D004833 4.1e-17 91.7 54 77.8
Phvul.005G024600 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 4.1e-17 91.7 56 76.8
Sp2g18450 Schrenkiella parvula HOM05D003957 ORTHO05D004833 5.4e-17 91.3 58 72.4
PSO384G3990 Papaver somniferum HOM05D003957 ORTHO05D004833 7.0e-17 90.9 66 65.2
CARHR291460 Cardamine hirsuta HOM05D003957 ORTHO05D004833 9.2e-17 90.5 102 48.0
Ah.00g001340 Amaranthus hybridus HOM05D003957 ORTHO05D004833 1.6e-16 89.7 53 79.2
Sed0012226 Sechium edule HOM05D003957 ORTHO05D004833 1.6e-16 89.7 56 75.0
Solyc01g087300.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 1.6e-16 89.7 55 76.4
Sopen01g034340 Solanum pennellii HOM05D003957 ORTHO05D004833 1.6e-16 89.7 55 76.4
TWI73G1181 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 1.6e-16 89.7 56 76.8
CAN.G219.37 Capsicum annuum HOM05D003957 ORTHO05D004833 2.1e-16 89.4 55 76.4
THA.LOC104817580 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 7.8e-16 87.4 57 68.4
Aa31LG5G18360 Aethionema arabicum HOM05D003957 ORTHO05D004833 1.3e-15 86.7 57 64.9
Mapoly0013s0118 Marchantia polymorpha HOM05D003957 ORTHO05D004833 3.9e-15 85.1 58 67.2
Oeu006567.1 Olea europaea HOM05D003957 ORTHO05D004833 5.1e-15 84.7 53 71.7
Haze_03193 Corylus avellana HOM05D000309 ORTHO05D000008 8.6e-15 84.0 45 86.7
TAR623G1381 Trochodendron aralioides HOM05D003957 ORTHO05D004833 1.1e-14 83.6 46 82.6
Cfa010787 Carpinus fangiana HOM05D003957 ORTHO05D004833 9.5e-14 80.5 113 46.0
Pp3c7_21950 Physcomitrium patens HOM05D003957 ORTHO05D004833 1.2e-13 80.1 49 71.4
AagrBONN_evm.TU.Sc2ySwM_117.3237 Anthoceros agrestis HOM05D003957 ORTHO05D004833 1.6e-13 79.7 49 73.5
Os04g0278900 Oryza sativa ssp. japonica HOM05D003957 ORTHO05D004833 3.6e-13 78.6 42 83.3
unitig_749.g14329 Utricularia gibba HOM05D003957 ORTHO05D004833 6.2e-13 77.8 46 73.9
unitig_749.g13714 Utricularia gibba HOM05D003957 ORTHO05D004833 1.5e-11 73.2 46 69.6
AUR62023075 Chenopodium quinoa HOM05D003957 ORTHO05D004833 2.0e-11 72.8 40 80.0
AUR62043481 Chenopodium quinoa HOM05D003957 ORTHO05D004833 2.0e-11 72.8 40 80.0
Sopen01g034450 Solanum pennellii HOM05D003957 ORTHO05D030633 2.0e-11 72.8 52 65.4
Solyc01g087410.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.3e-10 70.1 52 63.5
Solyc01g087370.2 Solanum lycopersicum HOM05D003531 ORTHO05D030633 1.7e-10 69.7 52 63.5
Solyc01g087390.2 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.7e-10 69.7 52 63.5
SMO174G0131 Selaginella moellendorffii HOM05D003957 ORTHO05D004833 2.2e-10 69.3 49 59.2
CBR_g45512 Chara braunii HOM05D003957 ORTHO05D004833 8.3e-10 67.4 55 52.7
Cre15.g636896 Chlamydomonas reinhardtii HOM05D003957 ORTHO05D004833 7.1e-09 64.3 41 63.4
MCO14G372 Micromonas commoda HOM05D003957 ORTHO05D004833 6.6e-07 57.8 42 59.5


User provided reference genes

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