Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008121 Camellia sinensis var. sinensis HOM05D001495 ORTHO05D001391 5.0e-54 214.2 105 100.0
CSS0023330 Camellia sinensis var. sinensis HOM05D001495 ORTHO05D001391 1.0e-19 100.1 58 86.2
CAN.G114.5 Capsicum annuum HOM05D001495 ORTHO05D001391 2.3e-19 99.0 58 84.5
Ciclev10006924m.g Citrus clementina HOM05D001495 ORTHO05D001391 2.3e-19 99.0 58 84.5
Dinv44266 Davidia involucrata HOM05D001495 ORTHO05D001391 2.3e-19 99.0 58 84.5
MD13G1150500 Malus domestica HOM05D001495 ORTHO05D001391 2.3e-19 99.0 58 84.5
Nitab4.5_0000177g0070 Nicotiana tabacum HOM05D001495 ORTHO05D001391 2.3e-19 99.0 58 84.5
Nitab4.5_0009057g0010 Nicotiana tabacum HOM05D001495 ORTHO05D001391 2.3e-19 99.0 58 84.5
Peaxi162Scf00228g00515 Petunia axillaris HOM05D001495 ORTHO05D001391 2.3e-19 99.0 58 84.5
Potri.010G147900 Populus trichocarpa HOM05D001495 ORTHO05D001391 2.3e-19 99.0 58 84.5
Prupe.1G114600 Prunus persica HOM05D001495 ORTHO05D001391 2.3e-19 99.0 58 84.5
Sabra10G0114000 Salix brachista HOM05D001495 ORTHO05D001391 2.3e-19 99.0 58 84.5
Actinidia13351 Actinidia chinensis HOM05D001495 ORTHO05D001391 4.0e-19 98.2 58 84.5
Actinidia14253 Actinidia chinensis HOM05D001495 ORTHO05D001391 4.0e-19 98.2 58 84.5
SGA_v2.0_scaffold64G22100 Striga asiatica HOM05D001495 ORTHO05D001391 5.2e-19 97.8 80 65.0
CSS0010886 Camellia sinensis var. sinensis HOM05D001495 ORTHO05D001391 6.8e-19 97.4 58 82.8
Manes.15G001500 Manihot esculenta HOM05D001495 ORTHO05D001391 8.8e-19 97.1 58 82.8
vmacro15174 Vaccinium macrocarpon HOM05D001495 ORTHO05D001391 8.8e-19 97.1 58 82.8
RcHm_v2.0_Chr4g0425821 Rosa chinensis HOM05D001495 ORTHO05D001391 1.2e-18 96.7 69 72.5
Solyc01g058450.3 Solanum lycopersicum HOM05D001495 ORTHO05D001391 1.2e-18 96.7 58 82.8
Sopen01g024010 Solanum pennellii HOM05D001495 ORTHO05D001391 1.2e-18 96.7 58 82.8
FvH4_4g20210 Fragaria vesca HOM05D001495 ORTHO05D001391 1.5e-18 96.3 69 71.0
Manes.03G206500 Manihot esculenta HOM05D001495 ORTHO05D001391 1.5e-18 96.3 58 82.8
Atru.chr4.3049 Acer truncatum HOM05D001495 ORTHO05D001391 2.0e-18 95.9 58 82.8
MD16G1150700 Malus domestica HOM05D001495 ORTHO05D001391 2.0e-18 95.9 58 81.0
GSVIVG01034966001 Vitis vinifera HOM05D001495 ORTHO05D001391 2.0e-18 95.9 58 81.0
Aqoxy6G02578 Aquilegia oxysepala HOM05D001495 ORTHO05D001391 2.6e-18 95.5 83 60.2
Lsat_1_v5_gn_6_261 Lactuca sativa HOM05D001495 ORTHO05D001391 2.6e-18 95.5 69 71.0
Mapoly0009s0245 Marchantia polymorpha HOM05D001495 ORTHO05D001391 2.6e-18 95.5 83 57.8
Oeu027342.1 Olea europaea HOM05D001495 ORTHO05D001391 3.4e-18 95.1 58 81.0
ATR0800G063 Amborella trichopoda HOM05D001495 ORTHO05D001391 5.7e-18 94.4 58 75.9
ClCG06G004470 Citrullus lanatus HOM05D001495 ORTHO05D001391 7.5e-18 94.0 58 81.0
Cc03_g00650 Coffea canephora HOM05D001495 ORTHO05D001391 7.5e-18 94.0 58 77.6
MELO3C021258.2 Cucumis melo HOM05D001495 ORTHO05D001391 7.5e-18 94.0 58 81.0
CsaV3_6G028500 Cucumis sativus L. HOM05D001495 ORTHO05D001391 7.5e-18 94.0 58 81.0
CsaV3_UNG230160 Cucumis sativus L. HOM05D001495 ORTHO05D001391 7.5e-18 94.0 58 81.0
Migut.G00044 Erythranthe guttata HOM05D001495 ORTHO05D001391 7.5e-18 94.0 80 63.8
HanXRQChr13g0395241 Helianthus annuus HOM05D001495 ORTHO05D001391 7.5e-18 94.0 69 69.6
Sed0003150 Sechium edule HOM05D001495 ORTHO05D001391 7.5e-18 94.0 58 81.0
SGA_v2.0_scaffold157G37332 Striga asiatica HOM05D001495 ORTHO05D001391 7.5e-18 94.0 80 63.8
Cfa015287 Carpinus fangiana HOM05D001495 ORTHO05D001391 1.3e-17 93.2 58 81.0
CiPaw.02G073400 Carya illinoinensis HOM05D001495 ORTHO05D001391 1.3e-17 93.2 58 81.0
EL10Ac3g05531 Beta vulgaris HOM05D001495 ORTHO05D001391 1.7e-17 92.8 72 70.8
SEGI_21142 Sequoiadendron giganteum HOM05D001495 ORTHO05D001391 1.7e-17 92.8 58 74.1
Dinv15145 Davidia involucrata HOM05D001495 ORTHO05D001391 2.2e-17 92.4 58 77.6
CANSAT11G1739 Cannabis sativa HOM05D001495 ORTHO05D001391 2.8e-17 92.0 80 61.2
AUR62039258 Chenopodium quinoa HOM05D001495 ORTHO05D001391 2.8e-17 92.0 72 69.4
Glyma.07G237900 Glycine max HOM05D001495 ORTHO05D001391 2.8e-17 92.0 58 81.0
Glyma.17G035500 Glycine max HOM05D001495 ORTHO05D001391 2.8e-17 92.0 58 81.0
Lalb_Chr07g0181991 Lupinus albus HOM05D001495 ORTHO05D001391 2.8e-17 92.0 58 81.0
Lalb_Chr13g0298581 Lupinus albus HOM05D001495 ORTHO05D001391 2.8e-17 92.0 69 69.6
QL06p012773 Quercus lobata HOM05D001495 ORTHO05D001391 2.8e-17 92.0 58 79.3
arahy.Tifrunner.gnm1.ann1.TK9WZW Arachis hypogaea HOM05D001495 ORTHO05D001391 3.7e-17 91.7 58 79.3
arahy.Tifrunner.gnm1.ann1.ZU7UIY Arachis hypogaea HOM05D001495 ORTHO05D001391 3.7e-17 91.7 58 79.3
CDE02G3065 Ceratophyllum demersum HOM05D001495 ORTHO05D001391 4.8e-17 91.3 58 70.7
Lj6A693T65 Lonicera japonica HOM05D001495 ORTHO05D001391 4.8e-17 91.3 74 70.3
Hund11986 Selenicereus undatus HOM05D001495 ORTHO05D001391 4.8e-17 91.3 58 79.3
COL.COLO4_34585 Corchorus olitorius HOM05D001495 ORTHO05D001391 6.3e-17 90.9 58 75.9
CDE05G1131 Ceratophyllum demersum HOM05D001495 ORTHO05D001391 8.3e-17 90.5 58 70.7
DCAR_026991 Daucus carota HOM05D001495 ORTHO05D001391 8.3e-17 90.5 66 74.2
Nn4g25557 Nelumbo nucifera HOM05D001495 ORTHO05D001391 8.3e-17 90.5 59 78.0
Pp3c13_15440 Physcomitrium patens HOM05D001495 ORTHO05D001391 8.3e-17 90.5 58 72.4
Pp3c3_21560 Physcomitrium patens HOM05D001495 ORTHO05D001391 8.3e-17 90.5 58 72.4
VMungo1215G2798 Vigna mungo HOM05D001495 ORTHO05D001391 8.3e-17 90.5 83 61.4
AUR62016232 Chenopodium quinoa HOM05D001495 ORTHO05D001391 1.1e-16 90.1 72 68.1
TAR636G2324 Trochodendron aralioides HOM05D001495 ORTHO05D001391 1.1e-16 90.1 59 76.3
Hma1.2p1_0078F.1_g039900 Hydrangea macrophylla HOM05D001495 ORTHO05D001391 1.4e-16 89.7 59 78.0
Phvul.003G116400 Phaseolus vulgaris HOM05D001495 ORTHO05D001391 1.4e-16 89.7 58 79.3
TWI73G1144 Tripterygium wilfordii HOM05D001495 ORTHO05D001391 1.8e-16 89.4 69 66.7
Duzib151G0245 Durio zibethinus HOM05D001495 ORTHO05D001391 2.4e-16 89.0 58 74.1
ECA233G5661 Erigeron canadensis HOM05D001495 ORTHO05D001391 2.4e-16 89.0 70 67.1
Medtr4g122650 Medicago truncatula HOM05D001495 ORTHO05D001391 2.4e-16 89.0 58 74.1
Sc25g0003200 Simmondsia chinensis HOM05D001495 ORTHO05D001391 2.4e-16 89.0 70 68.6
TPR.G25425 Trifolium pratense HOM05D001495 ORTHO05D001391 2.4e-16 89.0 58 75.9
Gohir.D10G180400 Gossypium hirsutum HOM05D001495 ORTHO05D001391 4.1e-16 88.2 58 75.9
Gorai.011G201900 Gossypium raimondii HOM05D001495 ORTHO05D001391 4.1e-16 88.2 58 75.9
Psat4g021880 Pisum sativum HOM05D001495 ORTHO05D001391 4.1e-16 88.2 58 75.9
Thecc.04G304200 Theobroma cacao HOM05D001495 ORTHO05D001391 4.1e-16 88.2 58 74.1
Ca_21427_v3 Cicer arietinum L. HOM05D001495 ORTHO05D001391 5.4e-16 87.8 58 74.1
Gohir.A10G173900 Gossypium hirsutum HOM05D001495 ORTHO05D001391 5.4e-16 87.8 58 74.1
SMO244G0092 Selaginella moellendorffii HOM05D001495 ORTHO05D001391 5.4e-16 87.8 80 52.5
THA.LOC104820311 Tarenaya hassleriana HOM05D001495 ORTHO05D001391 5.4e-16 87.8 58 74.1
THA.LOC104821799 Tarenaya hassleriana HOM05D001495 ORTHO05D001391 5.4e-16 87.8 58 74.1
Ah.13g071430 Amaranthus hybridus HOM05D001495 ORTHO05D001391 7.0e-16 87.4 72 68.1
Lj4g0013859 Lotus japonicus HOM05D001495 ORTHO05D001391 7.0e-16 87.4 58 77.6
Carub.0007s2523 Capsella rubella HOM05D001495 ORTHO05D001391 9.1e-16 87.0 58 74.1
Thhalv10024390m.g Eutrema salsugineum HOM05D001495 ORTHO05D001391 9.1e-16 87.0 58 74.1
Nn3g21739 Nelumbo nucifera HOM05D001495 ORTHO05D001391 9.1e-16 87.0 57 75.4
BcaNung00209 Brassica carinata HOM05D001495 ORTHO05D001391 1.2e-15 86.7 58 74.1
Zm00001eb095560 Zea mays HOM05D001495 ORTHO05D001391 1.6e-15 86.3 58 69.0
Sp7g14810 Schrenkiella parvula HOM05D001495 ORTHO05D001391 2.0e-15 85.9 58 74.1
BcaC09g50326 Brassica carinata HOM05D001495 ORTHO05D001391 2.7e-15 85.5 58 72.4
A01p21280 Brassica napus HOM05D001495 ORTHO05D001391 2.7e-15 85.5 58 72.4
C01p26620 Brassica napus HOM05D001495 ORTHO05D001391 2.7e-15 85.5 58 72.4
BolC1t02603H Brassica oleracea HOM05D001495 ORTHO05D001391 2.7e-15 85.5 58 72.4
BraA01t02035Z Brassica rapa HOM05D001495 ORTHO05D001391 2.7e-15 85.5 58 72.4
Os09g0123200 Oryza sativa ssp. japonica HOM05D001495 ORTHO05D001391 4.5e-15 84.7 58 67.2
SHI00113 Sapria himalayana HOM05D001495 ORTHO05D001391 4.5e-15 84.7 45 86.7
CARHR222670 Cardamine hirsuta HOM05D001495 ORTHO05D001391 7.7e-15 84.0 58 70.7
AT4G16280 Arabidopsis thaliana HOM05D001495 ORTHO05D001391 1.0e-14 83.6 58 70.7
Duzib212G0382 Durio zibethinus HOM05D001495 ORTHO05D001391 1.7e-14 82.8 58 70.7
Eucgr.H04064 Eucalyptus grandis HOM05D001495 ORTHO05D001391 1.7e-14 82.8 77 61.0
Aa31LG10G5840 Aethionema arabicum HOM05D001495 ORTHO05D001391 2.2e-14 82.4 58 69.0
PSO421G0756 Papaver somniferum HOM05D001495 ORTHO05D001391 5.0e-14 81.3 59 66.1
PSO724G0940 Papaver somniferum HOM05D001495 ORTHO05D001391 8.5e-14 80.5 59 64.4
HPP92_020088 Vanilla planifolia HOM05D001495 ORTHO05D001391 1.1e-13 80.1 59 69.5
Sed0024600 Sechium edule HOM05D001495 ORTHO05D001391 4.2e-13 78.2 58 63.8
SEGI_15924 Sequoiadendron giganteum HOM05D001495 ORTHO05D001391 7.2e-13 77.4 71 50.7
CBR_g38484 Chara braunii HOM05D001495 ORTHO05D001391 1.6e-12 76.3 58 58.6
SEGI_37032 Sequoiadendron giganteum HOM05D001495 ORTHO05D001391 3.6e-12 75.1 49 67.3
SEGI_05089 Sequoiadendron giganteum HOM05D001495 ORTHO05D001391 8.0e-12 73.9 58 58.6
Dinv33135 Davidia involucrata HOM05D001495 ORTHO05D001391 1.0e-11 73.6 49 65.3
Manes.01G230100 Manihot esculenta HOM05D001495 ORTHO05D001391 1.0e-11 73.6 68 58.8
Atru.chr5.964 Acer truncatum HOM05D001495 ORTHO05D001391 1.4e-11 73.2 56 58.9
Sabra02G0163000 Salix brachista HOM05D001495 ORTHO05D001391 1.8e-11 72.8 74 55.4
GSVIVG01028149001 Vitis vinifera HOM05D001495 ORTHO05D001391 1.8e-11 72.8 51 64.7
Potri.002G192900 Populus trichocarpa HOM05D001495 ORTHO05D001391 2.3e-11 72.4 69 58.0
Cfa005762 Carpinus fangiana HOM05D001495 ORTHO05D001391 3.0e-11 72.0 50 70.0
CANSAT25G3309 Cannabis sativa HOM05D001495 ORTHO05D001391 4.0e-11 71.6 58 60.3
Sc17g0000320 Simmondsia chinensis HOM05D001495 ORTHO05D001391 4.0e-11 71.6 56 58.9
CiPaw.07G119600 Carya illinoinensis HOM05D001495 ORTHO05D001391 6.8e-11 70.9 64 59.4
ClCG10G011580 Citrullus lanatus HOM05D001495 ORTHO05D001391 8.8e-11 70.5 70 50.0
MELO3C012931.2 Cucumis melo HOM05D001495 ORTHO05D001391 8.8e-11 70.5 70 50.0
QL12p019026 Quercus lobata HOM05D001495 ORTHO05D001391 8.8e-11 70.5 56 62.5
Dinv10122 Davidia involucrata HOM05D001495 ORTHO05D001391 1.2e-10 70.1 71 57.7
Ciclev10019644m.g Citrus clementina HOM05D001495 ORTHO05D001391 2.0e-10 69.3 56 51.8
Eucgr.H00995 Eucalyptus grandis HOM05D001495 ORTHO05D001391 2.0e-10 69.3 51 62.7
CsaV3_3G026590 Cucumis sativus L. HOM05D001495 ORTHO05D001391 3.4e-10 68.6 70 48.6
MSTRG.21704 Avicennia marina HOM05D001495 ORTHO05D001391 9.8e-10 67.0 72 50.0
CSS0029739 Camellia sinensis var. sinensis HOM05D001495 ORTHO05D001391 9.8e-10 67.0 68 55.9
Thecc.01G316900 Theobroma cacao HOM05D001495 ORTHO05D001391 1.7e-09 66.2 56 50.0
vmacro02387 Vaccinium macrocarpon HOM05D001495 ORTHO05D001391 1.7e-09 66.2 70 52.9
Duzib138G0012 Durio zibethinus HOM05D001495 ORTHO05D001391 2.2e-09 65.9 56 51.8
PGR083G2330 Punica granatum HOM05D001495 ORTHO05D001391 2.2e-09 65.9 51 54.9
DCAR_002884 Daucus carota HOM05D001495 ORTHO05D001391 4.9e-09 64.7 60 50.0
Rhsim13G0003200 Rhododendron simsii HOM05D001495 ORTHO05D001391 4.9e-09 64.7 49 61.2
Hma1.2p1_0408F.1_g146520 Hydrangea macrophylla HOM05D001495 ORTHO05D001391 6.3e-09 64.3 69 49.3
Ah.11g049000 Amaranthus hybridus HOM05D001495 ORTHO05D001391 8.3e-09 63.9 45 60.0
MD09G1285500 Malus domestica HOM05D001495 ORTHO05D001391 8.3e-09 63.9 46 63.0
Cc01_g21610 Coffea canephora HOM05D001495 ORTHO05D001391 1.1e-08 63.5 59 50.8
PSO673G0031 Papaver somniferum HOM05D001495 ORTHO05D001391 1.1e-08 63.5 40 67.5
SGA_v2.0_scaffold376G50291 Striga asiatica HOM05D001495 ORTHO05D001391 1.4e-08 63.2 58 48.3
Gohir.A07G129200 Gossypium hirsutum HOM05D001495 ORTHO05D001391 2.4e-08 62.4 56 51.8
Gohir.D07G133600 Gossypium hirsutum HOM05D001495 ORTHO05D001391 2.4e-08 62.4 56 51.8
Gorai.001G144900 Gossypium raimondii HOM05D001495 ORTHO05D001391 2.4e-08 62.4 56 51.8
Solyc08g007370.3 Solanum lycopersicum HOM05D001495 ORTHO05D001391 4.1e-08 61.6 44 61.4
Sopen08g003310 Solanum pennellii HOM05D001495 ORTHO05D001391 4.1e-08 61.6 44 61.4
Aqoxy2G02692 Aquilegia oxysepala HOM05D001495 ORTHO05D001391 5.4e-08 61.2 68 51.5
Migut.D00063 Erythranthe guttata HOM05D001495 ORTHO05D001391 5.4e-08 61.2 45 53.3
AUR62024617 Chenopodium quinoa HOM05D001495 ORTHO05D001391 9.2e-08 60.5 45 57.8
COL.COLO4_23202 Corchorus olitorius HOM05D001495 ORTHO05D001391 9.2e-08 60.5 53 52.8
Nitab4.5_0000712g0180 Nicotiana tabacum HOM05D001495 ORTHO05D001391 1.2e-07 60.1 65 49.2
EL10As5g23564 Beta vulgaris HOM05D001495 ORTHO05D001391 1.6e-07 59.7 49 51.0
HanXRQChr04g0106241 Helianthus annuus HOM05D001495 ORTHO05D001391 2.0e-07 59.3 49 53.1
Nitab4.5_0002225g0090 Nicotiana tabacum HOM05D001495 ORTHO05D001391 2.0e-07 59.3 65 47.7
TWI36G1783 Tripterygium wilfordii HOM05D001495 ORTHO05D001391 2.0e-07 59.3 63 42.9
Actinidia21385 Actinidia chinensis HOM05D001495 ORTHO05D001391 7.7e-07 57.4 79 43.0
Thhalv10001438m.g Eutrema salsugineum HOM05D001495 ORTHO05D001391 1.7e-06 56.2 70 47.1
Sp4g29260 Schrenkiella parvula HOM05D001495 ORTHO05D001391 1.7e-06 56.2 70 47.1
Carub.0004s3003 Capsella rubella HOM05D001495 ORTHO05D001391 2.9e-06 55.5 68 47.1
Aa31LG1G28600 Aethionema arabicum HOM05D001495 ORTHO05D001391 3.8e-06 55.1 75 41.3
ECA236G3896 Erigeron canadensis HOM05D000324 ORTHO05D001014 5.0e-06 54.7 43 55.8
Peaxi162Scf00102g01065 Petunia axillaris HOM05D001495 ORTHO05D001391 5.0e-06 54.7 58 48.3
CAN.G1227.15 Capsicum annuum HOM05D001495 ORTHO05D001391 6.6e-06 54.3 65 47.7
PGR119G1647 Punica granatum HOM05D001495 ORTHO05D001391 8.6e-06 53.9 49 44.9


User provided reference genes

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