Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 3.6e-163 578.2 289 100.0
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 6.4e-112 407.9 273 75.8
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 8.4e-112 407.5 290 73.1
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 4.6e-110 401.7 292 69.2
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 8.7e-109 397.5 287 72.1
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.9e-108 396.4 289 70.6
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.9e-108 396.4 289 70.6
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 2.8e-107 392.5 292 70.2
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 8.1e-107 391.0 288 69.4
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 3.1e-106 389.0 290 69.0
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 6.9e-106 387.9 292 69.5
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 1.5e-105 386.7 290 68.6
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 1.5e-105 386.7 288 67.0
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 1.5e-105 386.7 288 69.4
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 2.6e-105 386.0 277 72.9
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 7.6e-105 384.4 294 68.0
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 1.7e-104 383.3 291 67.4
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.9e-103 379.8 287 69.0
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 2.5e-103 379.4 287 68.3
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 4.2e-103 378.6 292 65.8
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 4.2e-103 378.6 292 66.1
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 5.5e-103 378.3 292 65.8
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 2.7e-102 375.9 305 63.0
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 4.6e-102 375.2 287 65.5
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 1.3e-101 373.6 289 67.1
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 2.3e-101 372.9 235 77.0
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 2.3e-101 372.9 291 66.7
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 1.5e-100 370.2 286 68.5
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.5e-100 369.4 291 64.6
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 2.5e-100 369.4 289 66.1
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 2.5e-100 369.4 290 66.6
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 7.4e-100 367.9 296 66.6
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 7.4e-100 367.9 296 66.6
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 1.3e-99 367.1 286 67.5
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.6e-99 366.7 292 64.4
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 6.2e-99 364.8 287 64.8
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 1.1e-98 364.0 287 65.5
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 1.4e-98 363.6 289 65.7
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 4.0e-98 362.1 290 64.8
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 1.2e-97 360.5 302 60.9
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 2.0e-97 359.8 345 57.7
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 2.0e-97 359.8 289 65.4
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 3.4e-97 359.0 286 64.3
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 5.8e-97 358.2 321 60.1
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 1.3e-96 357.1 287 64.1
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 1.7e-96 356.7 300 64.7
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 2.2e-96 356.3 289 64.4
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 3.8e-96 355.5 244 68.9
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.1e-95 354.0 284 66.2
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 2.5e-95 352.8 285 65.6
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 3.2e-95 352.4 287 63.8
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 1.6e-94 350.1 291 63.2
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 4.6e-94 348.6 276 65.6
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 6.0e-94 348.2 277 67.5
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 7.9e-94 347.8 258 67.8
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 1.0e-93 347.4 288 62.8
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 1.3e-93 347.1 294 62.2
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 1.3e-93 347.1 292 62.0
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 3.0e-93 345.9 294 61.9
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 3.9e-93 345.5 294 61.9
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 5.1e-93 345.1 291 59.8
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 8.7e-93 344.4 294 61.6
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 8.7e-93 344.4 294 61.6
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 1.1e-92 344.0 292 60.6
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.1e-92 344.0 271 65.7
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.5e-92 343.6 271 66.4
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 1.9e-92 343.2 287 60.6
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 2.5e-92 342.8 276 64.1
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 5.7e-92 341.7 291 61.9
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 5.7e-92 341.7 294 60.5
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 7.4e-92 341.3 297 60.6
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 9.7e-92 340.9 297 60.3
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 4.8e-91 338.6 328 55.2
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 1.1e-90 337.4 296 61.1
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 1.1e-90 337.4 287 62.0
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 1.4e-90 337.0 296 60.5
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 3.1e-90 335.9 295 60.7
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 6.9e-90 334.7 297 60.6
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 2.0e-89 333.2 289 61.6
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 2.6e-89 332.8 317 58.4
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 3.4e-89 332.4 289 61.6
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 3.4e-89 332.4 288 61.1
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 1.0e-88 330.9 291 59.1
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 2.9e-88 329.3 262 65.6
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 5.0e-88 328.6 290 57.9
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 1.1e-87 327.4 289 61.2
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.2e-87 325.9 260 65.0
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 4.2e-87 325.5 298 58.4
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 7.2e-87 324.7 288 58.7
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 7.9e-86 321.2 235 66.4
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 3.9e-85 318.9 288 58.7
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 1.3e-83 313.9 222 71.6
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.4e-82 310.5 261 60.2
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 3.1e-82 309.3 235 60.4
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 9.1e-82 307.8 284 57.0
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 2.0e-81 306.6 206 72.3
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 3.4e-81 305.8 283 56.5
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 7.9e-78 294.7 222 68.0
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 6.7e-77 291.6 266 60.5
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 6.7e-77 291.6 290 54.5
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 2.0e-76 290.0 207 67.6
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 4.4e-76 288.9 276 55.8
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 5.7e-76 288.5 294 54.1
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.3e-75 287.3 212 66.5
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 8.5e-72 274.6 273 56.8
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 1.1e-71 274.2 286 55.2
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 2.1e-70 270.0 228 64.0
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 1.2e-60 237.7 268 52.2
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 1.5e-60 237.3 278 50.4
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 1.4e-58 230.7 215 60.0
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 2.0e-57 226.9 177 65.0
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 3.5e-57 226.1 231 56.3
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 3.8e-56 222.6 201 62.2
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 5.0e-56 222.2 292 48.6
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 2.5e-55 219.9 162 67.9
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 3.2e-55 219.5 148 73.6
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 4.7e-54 215.7 226 56.6
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 8.0e-54 214.9 189 55.6
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 1.4e-53 214.2 201 58.7
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 2.6e-52 209.9 289 41.2
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 5.4e-50 202.2 242 46.7
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 2.0e-49 200.3 274 44.2
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 3.5e-49 199.5 130 70.0
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 2.8e-46 189.9 254 40.6
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 2.0e-41 173.7 121 66.1
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 4.5e-41 172.6 245 44.1
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 1.5e-39 167.5 170 54.7
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 1.0e-37 161.4 115 67.0
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.4e-37 161.0 106 72.6
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 1.9e-34 150.6 201 49.8
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 3.2e-34 149.8 139 58.3
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.8e-30 136.7 84 75.0
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 1.1e-29 134.8 301 34.6
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 1.5e-28 131.0 218 40.8
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 1.7e-27 127.5 200 43.5
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 1.7e-19 100.9 202 39.1
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 2.1e-17 94.0 208 30.8
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 2.5e-15 87.0 211 29.4
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 5.4e-10 69.3 84 51.2


User provided reference genes

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