Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006619 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D111492 1.3e-54 216.1 102 100.0
CSS0007551 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D111836 1.1e-53 213.0 102 99.0
Dinv17300 Davidia involucrata HOM05D000104 ORTHO05D006071 7.3e-18 94.0 45 93.3
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 1.4e-16 89.7 45 84.4
Actinidia20024 Actinidia chinensis HOM05D000104 ORTHO05D006071 1.8e-16 89.4 45 88.9
vmacro23048 Vaccinium macrocarpon HOM05D000104 ORTHO05D006071 4.0e-16 88.2 45 84.4
vmacro23146 Vaccinium macrocarpon HOM05D000104 ORTHO05D006071 4.0e-16 88.2 45 84.4
Cfa002182 Carpinus fangiana HOM05D000104 ORTHO05D006071 2.6e-15 85.5 45 84.4
Nn5g28449 Nelumbo nucifera HOM05D000104 ORTHO05D006071 1.7e-14 82.8 45 82.2
Haze_25321 Corylus avellana HOM05D000104 ORTHO05D006071 2.2e-14 82.4 45 80.0
Eucgr.H05148 Eucalyptus grandis HOM05D000104 ORTHO05D006071 2.9e-14 82.0 90 47.8
QL10p041777 Quercus lobata HOM05D000104 ORTHO05D006071 2.9e-14 82.0 45 82.2
GSVIVG01026450001 Vitis vinifera HOM05D000104 ORTHO05D006071 2.9e-14 82.0 45 82.2
PGR102G2777 Punica granatum HOM05D000104 ORTHO05D006071 3.7e-14 81.6 90 47.8
TAR628G1730 Trochodendron aralioides HOM05D000104 ORTHO05D006071 3.7e-14 81.6 45 82.2
Nn1g08948 Nelumbo nucifera HOM05D000104 ORTHO05D006071 6.4e-14 80.9 45 80.0
Cc02_g29430 Coffea canephora HOM05D000104 ORTHO05D006071 8.3e-14 80.5 45 75.6
Potri.007G102800 Populus trichocarpa HOM05D000104 ORTHO05D006071 1.8e-13 79.3 45 77.8
Sabra07G0084400 Salix brachista HOM05D000104 ORTHO05D006071 1.8e-13 79.3 45 77.8
QL10p041836 Quercus lobata HOM05D000104 ORTHO05D006071 2.4e-13 79.0 45 80.0
VMungo0251G3768 Vigna mungo HOM05D000104 ORTHO05D006071 3.2e-13 78.6 45 77.8
arahy.Tifrunner.gnm1.ann1.DAD8TC Arachis hypogaea HOM05D000104 ORTHO05D006071 4.1e-13 78.2 45 77.8
Potri.005G066600 Populus trichocarpa HOM05D000104 ORTHO05D006071 4.1e-13 78.2 45 75.6
arahy.Tifrunner.gnm1.ann1.H21J0D Arachis hypogaea HOM05D000104 ORTHO05D006071 5.4e-13 77.8 45 77.8
CiPaw.04G080100 Carya illinoinensis HOM05D000104 ORTHO05D006071 7.0e-13 77.4 45 80.0
Phvul.002G274300 Phaseolus vulgaris HOM05D000104 ORTHO05D006071 7.0e-13 77.4 45 77.8
THA.LOC104800148 Tarenaya hassleriana HOM05D000104 ORTHO05D006071 9.2e-13 77.0 90 45.6
Ca_17624_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006071 1.6e-12 76.3 45 77.8
Ca_21740_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006071 1.6e-12 76.3 45 77.8
Glyma.05G193900 Glycine max HOM05D000104 ORTHO05D006071 2.7e-12 75.5 45 73.3
Sabra05G0054900 Salix brachista HOM05D000104 ORTHO05D006071 2.7e-12 75.5 45 73.3
SalBow5G2719 Salvia bowleyana HOM05D000104 ORTHO05D006071 3.5e-12 75.1 45 71.1
MBI03_g13493_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D006071 4.6e-12 74.7 66 53.0
Lalb_Chr12g0203051 Lupinus albus HOM05D000104 ORTHO05D006071 7.8e-12 73.9 45 73.3
Medtr8g094070 Medicago truncatula HOM05D000104 ORTHO05D006071 7.8e-12 73.9 45 75.6
Atru.chr4.943 Acer truncatum HOM05D000104 ORTHO05D006071 1.0e-11 73.6 90 47.8
Hma1.2p1_2601F.1_g325200 Hydrangea macrophylla HOM05D000104 ORTHO05D006071 2.3e-11 72.4 53 71.7
Ciclev10000096m.g Citrus clementina HOM05D000104 ORTHO05D006071 3.0e-11 72.0 45 71.1
MELO3C024599.2 Cucumis melo HOM05D000104 ORTHO05D006071 3.0e-11 72.0 45 71.1
CsaV3_6G041230 Cucumis sativus L. HOM05D000104 ORTHO05D006071 3.0e-11 72.0 45 71.1
Glyma.08G001900 Glycine max HOM05D000104 ORTHO05D006071 3.0e-11 72.0 45 71.1
Hma1.2p1_0512F.1_g169270 Hydrangea macrophylla HOM05D000104 ORTHO05D006071 3.0e-11 72.0 45 80.0
CDE04G0721 Ceratophyllum demersum HOM05D000104 ORTHO05D006071 3.9e-11 71.6 45 68.9
DCAR_020007 Daucus carota HOM05D000104 ORTHO05D006071 5.0e-11 71.2 43 76.7
Thhalv10003558m.g Eutrema salsugineum HOM05D000104 ORTHO05D006071 5.0e-11 71.2 90 43.3
Sc09g0002280 Simmondsia chinensis HOM05D000104 ORTHO05D006071 5.0e-11 71.2 45 73.3
ClCG01G015120 Citrullus lanatus HOM05D000104 ORTHO05D006071 6.6e-11 70.9 45 68.9
Lsat_1_v5_gn_3_126201 Lactuca sativa HOM05D000104 ORTHO05D006071 6.6e-11 70.9 45 73.3
unitig_26.g9608 Utricularia gibba HOM05D000104 ORTHO05D006071 6.6e-11 70.9 45 64.4
Aqoxy6G00301 Aquilegia oxysepala HOM05D000104 ORTHO05D006071 8.6e-11 70.5 41 80.5
COL.COLO4_35752 Corchorus olitorius HOM05D000104 ORTHO05D006071 8.6e-11 70.5 45 66.7
Lj4g0008367 Lotus japonicus HOM05D000104 ORTHO05D006071 8.6e-11 70.5 45 75.6
SGA_v2.0_scaffold212G42200 Striga asiatica HOM05D000104 ORTHO05D006071 8.6e-11 70.5 45 75.6
Thecc.01G133200 Theobroma cacao HOM05D000104 ORTHO05D006071 1.1e-10 70.1 45 68.9
Oeu009636.2 Olea europaea HOM05D000104 ORTHO05D006071 1.5e-10 69.7 45 68.9
Psat7g045440 Pisum sativum HOM05D000104 ORTHO05D006071 1.5e-10 69.7 45 68.9
Sed0020852 Sechium edule HOM05D000104 ORTHO05D006071 1.5e-10 69.7 45 71.1
HanXRQChr13g0423701 Helianthus annuus HOM05D000104 ORTHO05D006071 2.5e-10 68.9 45 71.1
AL8G41210 Arabidopsis lyrata HOM05D000104 ORTHO05D006071 3.3e-10 68.6 45 68.9
Carub.0008s2473 Capsella rubella HOM05D000104 ORTHO05D006071 3.3e-10 68.6 45 68.9
Gohir.A09G004100 Gossypium hirsutum HOM05D000104 ORTHO05D006071 4.3e-10 68.2 46 65.2
Gohir.D09G003600 Gossypium hirsutum HOM05D000104 ORTHO05D006071 4.3e-10 68.2 46 65.2
TWI31G0382 Tripterygium wilfordii HOM05D000104 ORTHO05D006071 4.3e-10 68.2 90 46.7
CARHR277860 Cardamine hirsuta HOM05D000104 ORTHO05D006071 5.6e-10 67.8 45 66.7
ECA240G1465 Erigeron canadensis HOM05D000104 ORTHO05D006071 5.6e-10 67.8 46 71.7
Nitab4.5_0006307g0040 Nicotiana tabacum HOM05D000104 ORTHO05D006071 5.6e-10 67.8 45 68.9
Prupe.4G275700 Prunus persica HOM05D000104 ORTHO05D006071 5.6e-10 67.8 45 73.3
A06p30560 Brassica napus HOM05D000104 ORTHO05D006071 1.2e-09 66.6 90 42.2
BraA06t26005Z Brassica rapa HOM05D000104 ORTHO05D006071 1.2e-09 66.6 90 42.2
Lj4g0017230 Lotus japonicus HOM05D000104 ORTHO05D006071 1.2e-09 66.6 66 51.5
PSO170G5372 Papaver somniferum HOM05D000104 ORTHO05D006071 1.2e-09 66.6 45 64.4
BcaB02g09760 Brassica carinata HOM05D000104 ORTHO05D006071 1.6e-09 66.2 90 42.2
Sp2g27010 Schrenkiella parvula HOM05D000104 ORTHO05D006071 1.6e-09 66.2 90 42.2
Nitab4.5_0000316g0170 Nicotiana tabacum HOM05D000104 ORTHO05D006071 2.1e-09 65.9 45 66.7
TPR.G37376 Trifolium pratense HOM05D000104 ORTHO05D006071 2.1e-09 65.9 45 71.1
AT5G63950 Arabidopsis thaliana HOM05D000104 ORTHO05D006071 2.8e-09 65.5 45 64.4
Solyc01g068280.3 Solanum lycopersicum HOM05D000104 ORTHO05D006071 3.6e-09 65.1 45 64.4
Sopen01g030220 Solanum pennellii HOM05D000104 ORTHO05D006071 3.6e-09 65.1 45 64.4
HPP92_000084 Vanilla planifolia HOM05D000104 ORTHO05D006071 3.6e-09 65.1 41 68.3
MSTRG.16996 Avicennia marina HOM05D000104 ORTHO05D006071 4.7e-09 64.7 45 66.7
CAN.G410.42 Capsicum annuum HOM05D000104 ORTHO05D006071 4.7e-09 64.7 45 66.7
Gorai.006G005000 Gossypium raimondii HOM05D000104 ORTHO05D006071 4.7e-09 64.7 46 63.0
MD15G1135700 Malus domestica HOM05D000104 ORTHO05D006071 4.7e-09 64.7 45 68.9
Manes.13G085000 Manihot esculenta HOM05D000104 ORTHO05D006071 4.7e-09 64.7 45 71.1
ATR0188G008 Amborella trichopoda HOM05D000104 ORTHO05D006071 6.2e-09 64.3 42 71.4
Migut.B01201 Erythranthe guttata HOM05D000104 ORTHO05D006071 6.2e-09 64.3 45 64.4
PSO528G0238 Papaver somniferum HOM05D000104 ORTHO05D006071 6.2e-09 64.3 45 60.0
Peaxi162Scf00087g00224 Petunia axillaris HOM05D000104 ORTHO05D006071 8.0e-09 63.9 45 64.4
Hund21803 Selenicereus undatus HOM05D000104 ORTHO05D006071 1.4e-08 63.2 45 66.7
RcHm_v2.0_Chr2g0122191 Rosa chinensis HOM05D000104 ORTHO05D006071 1.8e-08 62.8 45 68.9
Eucgr.C01558 Eucalyptus grandis HOM05D000104 ORTHO05D006071 3.1e-08 62.0 45 66.7
BcaC01g02649 Brassica carinata HOM05D000104 ORTHO05D006071 4.0e-08 61.6 90 40.0
BcaC01g02651 Brassica carinata HOM05D000104 ORTHO05D006071 4.0e-08 61.6 90 40.0
C03p62400 Brassica napus HOM05D000104 ORTHO05D006071 4.0e-08 61.6 90 40.0
BolC3t18499H Brassica oleracea HOM05D000104 ORTHO05D006071 4.0e-08 61.6 90 40.0
FvH4_1g24690 Fragaria vesca HOM05D000104 ORTHO05D006071 4.0e-08 61.6 45 66.7
FAN19G1002 Fragaria x ananassa HOM05D000104 ORTHO05D006071 4.0e-08 61.6 45 66.7
FAN26G2158 Fragaria x ananassa HOM05D000104 ORTHO05D006071 5.2e-08 61.2 45 66.7
CANSAT01G0184 Cannabis sativa HOM05D000104 ORTHO05D006071 6.8e-08 60.8 49 61.2
Lsat_1_v5_gn_3_126241 Lactuca sativa HOM05D000104 ORTHO05D006071 1.2e-07 60.1 82 42.7
SMO146G0288 Selaginella moellendorffii HOM05D000104 ORTHO05D006071 2.6e-07 58.9 41 65.9
SEGI_00887 Sequoiadendron giganteum HOM05D000104 ORTHO05D006071 4.4e-07 58.2 44 61.4
SEGI_24909 Sequoiadendron giganteum HOM05D000104 ORTHO05D006071 4.4e-07 58.2 44 61.4
Ah.04g157970 Amaranthus hybridus HOM05D000104 ORTHO05D006071 7.5e-07 57.4 62 48.4
Pp3c2_11030 Physcomitrium patens HOM05D000104 ORTHO05D006071 9.8e-07 57.0 44 65.9
AUR62000507 Chenopodium quinoa HOM05D000104 ORTHO05D006071 1.3e-06 56.6 45 62.2
AUR62006852 Chenopodium quinoa HOM05D000104 ORTHO05D006071 1.3e-06 56.6 45 62.2
Pp3c14_20620 Physcomitrium patens HOM05D000104 ORTHO05D006071 1.3e-06 56.6 44 65.9
Aa31LG1G17950 Aethionema arabicum HOM05D000104 ORTHO05D006071 2.9e-06 55.5 47 57.4


User provided reference genes

Program Settings