Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006315 Camellia sinensis var. sinensis HOM05D004445 ORTHO05D005578 3.8e-66 254.6 122 100.0
CSS0046632 Camellia sinensis var. sinensis HOM05D004445 ORTHO05D005578 1.8e-23 112.8 54 100.0
Sabra08G0058200 Salix brachista HOM05D004445 ORTHO05D005578 1.8e-23 112.8 67 82.1
arahy.Tifrunner.gnm1.ann1.I91R84 Arachis hypogaea HOM05D004445 ORTHO05D005578 4.0e-23 111.7 54 98.1
arahy.Tifrunner.gnm1.ann1.PL7ZZZ Arachis hypogaea HOM05D004445 ORTHO05D005578 4.0e-23 111.7 54 98.1
arahy.Tifrunner.gnm1.ann1.Y7N0XK Arachis hypogaea HOM05D004445 ORTHO05D005578 4.0e-23 111.7 54 98.1
Ca_03838_v3 Cicer arietinum L. HOM05D004445 ORTHO05D005578 4.0e-23 111.7 54 98.1
Cc03_g15060 Coffea canephora HOM05D004445 ORTHO05D005578 4.0e-23 111.7 54 98.1
Glyma.09G262700 Glycine max HOM05D004445 ORTHO05D005578 4.0e-23 111.7 54 98.1
Glyma.18G229600 Glycine max HOM05D004445 ORTHO05D005578 4.0e-23 111.7 54 98.1
Hma1.2p1_0108F.1_g051900 Hydrangea macrophylla HOM05D004445 ORTHO05D005578 4.0e-23 111.7 54 98.1
Lj3g0027067 Lotus japonicus HOM05D004445 ORTHO05D005578 4.0e-23 111.7 54 98.1
Lalb_Chr13g0291081 Lupinus albus HOM05D004445 ORTHO05D005578 4.0e-23 111.7 54 98.1
Medtr4g080300 Medicago truncatula HOM05D004445 ORTHO05D005578 4.0e-23 111.7 54 98.1
Phvul.008G068400 Phaseolus vulgaris HOM05D004445 ORTHO05D005578 4.0e-23 111.7 54 98.1
TPR.G30476 Trifolium pratense HOM05D004445 ORTHO05D005578 4.0e-23 111.7 54 98.1
GSVIVG01038197001 Vitis vinifera HOM05D004445 ORTHO05D005578 4.0e-23 111.7 54 98.1
Sabra10G0137100 Salix brachista HOM05D004445 ORTHO05D005578 6.9e-23 110.9 56 94.6
Atru.chr3.1946 Acer truncatum HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Actinidia11436 Actinidia chinensis HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
CANSAT54G1898 Cannabis sativa HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Cpa.g.sc601.1 Carica papaya HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Cfa008488 Carpinus fangiana HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
CiPaw.01G199100 Carya illinoinensis HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
CiPaw.02G123500 Carya illinoinensis HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Ciclev10023071m.g Citrus clementina HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
COL.COLO4_03308 Corchorus olitorius HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
COL.COLO4_25170 Corchorus olitorius HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Haze_11169 Corylus avellana HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Duzib151G0738 Durio zibethinus HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Duzib268G1882 Durio zibethinus HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Eucgr.G01590 Eucalyptus grandis HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Eucgr.G01594 Eucalyptus grandis HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Eucgr.G01595 Eucalyptus grandis HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Eucgr.L00030 Eucalyptus grandis HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Gohir.A02G007400 Gossypium hirsutum HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Gohir.A09G213620 Gossypium hirsutum HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Gohir.D02G007200 Gossypium hirsutum HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Gohir.D09G212900 Gossypium hirsutum HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Gorai.006G232700 Gossypium raimondii HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Manes.05G137535 Manihot esculenta HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Manes.12G001100 Manihot esculenta HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Psat7g164240 Pisum sativum HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Potri.008G078400 Populus trichocarpa HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Potri.010G178700 Populus trichocarpa HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
PGR042G3106 Punica granatum HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
Thecc.04G161800 Theobroma cacao HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
TAR636G2830 Trochodendron aralioides HOM05D004445 ORTHO05D005578 9.0e-23 110.5 54 96.3
CAN.G960.57 Capsicum annuum HOM05D004445 ORTHO05D005578 1.2e-22 110.2 54 96.3
ClCG11G000770 Citrullus lanatus HOM05D004445 ORTHO05D005578 1.2e-22 110.2 53 96.2
MELO3C022586.2 Cucumis melo HOM05D004445 ORTHO05D005578 1.2e-22 110.2 53 96.2
CsaV3_5G012480 Cucumis sativus L. HOM05D004445 ORTHO05D005578 1.2e-22 110.2 53 96.2
Dinv18304 Davidia involucrata HOM05D004445 ORTHO05D005578 1.2e-22 110.2 54 96.3
Lalb_Chr08g0242021 Lupinus albus HOM05D004445 ORTHO05D005578 1.2e-22 110.2 54 98.1
Nitab4.5_0000812g0140 Nicotiana tabacum HOM05D004445 ORTHO05D005578 1.2e-22 110.2 54 96.3
Nitab4.5_0006279g0040 Nicotiana tabacum HOM05D004445 ORTHO05D005578 1.2e-22 110.2 54 96.3
Peaxi162Scf00003g04837 Petunia axillaris HOM05D004445 ORTHO05D005578 1.2e-22 110.2 54 96.3
Peaxi162Scf00483g00211 Petunia axillaris HOM05D004445 ORTHO05D005578 1.2e-22 110.2 54 96.3
QL07p046700 Quercus lobata HOM05D004445 ORTHO05D005578 1.2e-22 110.2 53 96.2
Solyc10g078450.2 Solanum lycopersicum HOM05D004445 ORTHO05D005578 1.2e-22 110.2 54 96.3
PGSC0003DMG400008371 Solanum tuberosum HOM05D004445 ORTHO05D005578 1.2e-22 110.2 54 96.3
vmacro15702 Vaccinium macrocarpon HOM05D004445 ORTHO05D005578 1.2e-22 110.2 69 76.8
ATR0171G021 Amborella trichopoda HOM05D004445 ORTHO05D005578 1.5e-22 109.8 54 96.3
arahy.Tifrunner.gnm1.ann1.H8LWLB Arachis hypogaea HOM05D004445 ORTHO05D005578 1.5e-22 109.8 54 96.3
EL10Ac3g06124 Beta vulgaris HOM05D004445 ORTHO05D005578 2.0e-22 109.4 54 94.4
AUR62002431 Chenopodium quinoa HOM05D004445 ORTHO05D005578 2.0e-22 109.4 54 94.4
AUR62023757 Chenopodium quinoa HOM05D004445 ORTHO05D005578 2.0e-22 109.4 54 94.4
ECA238G2251 Erigeron canadensis HOM05D004445 ORTHO05D005578 2.0e-22 109.4 54 96.3
HanXRQChr14g0449021 Helianthus annuus HOM05D004445 ORTHO05D005578 2.0e-22 109.4 54 96.3
THA.LOC104802338 Tarenaya hassleriana HOM05D004445 ORTHO05D005578 2.0e-22 109.4 54 94.4
THA.LOC104805002 Tarenaya hassleriana HOM05D004445 ORTHO05D005578 2.0e-22 109.4 54 94.4
Zm00001eb421160 Zea mays HOM05D004445 ORTHO05D005578 2.0e-22 109.4 54 94.4
Aa31LG1G25520 Aethionema arabicum HOM05D004445 ORTHO05D005578 2.6e-22 109.0 54 94.4
CDE06G1144 Ceratophyllum demersum HOM05D004445 ORTHO05D005578 2.6e-22 109.0 54 94.4
Oeu022452.1 Olea europaea HOM05D004445 ORTHO05D005578 2.6e-22 109.0 54 94.4
Os02g0510100 Oryza sativa ssp. japonica HOM05D004445 ORTHO05D005578 2.6e-22 109.0 54 94.4
PSO170G5655 Papaver somniferum HOM05D004445 ORTHO05D005578 2.6e-22 109.0 54 94.4
PSO357G0486 Papaver somniferum HOM05D004445 ORTHO05D005578 2.6e-22 109.0 54 94.4
SalBow3G0834 Salvia bowleyana HOM05D004445 ORTHO05D005578 2.6e-22 109.0 54 96.3
SalBow4G2087 Salvia bowleyana HOM05D004445 ORTHO05D005578 2.6e-22 109.0 54 96.3
Sopen10g029110 Solanum pennellii HOM05D004445 ORTHO05D005578 2.6e-22 109.0 54 94.4
TPR.G40363 Trifolium pratense HOM05D004445 ORTHO05D005578 2.6e-22 109.0 53 98.1
HPP92_007009 Vanilla planifolia HOM05D004445 ORTHO05D005578 2.6e-22 109.0 54 94.4
SGA_v2.0_scaffold292G47391 Striga asiatica HOM05D004445 ORTHO05D005578 3.4e-22 108.6 53 96.2
Thhalv10006338m.g Eutrema salsugineum HOM05D004445 ORTHO05D005578 4.4e-22 108.2 54 94.4
Sp5g03330 Schrenkiella parvula HOM05D004445 ORTHO05D005578 4.4e-22 108.2 54 94.4
Ah.07g203020 Amaranthus hybridus HOM05D004445 ORTHO05D005578 5.8e-22 107.8 54 92.6
Migut.F00861 Erythranthe guttata HOM05D004445 ORTHO05D005578 5.8e-22 107.8 54 96.3
Rhsim02G0086200 Rhododendron simsii HOM05D004445 ORTHO05D005578 5.8e-22 107.8 54 92.6
Rhsim02G0086900 Rhododendron simsii HOM05D004445 ORTHO05D005578 5.8e-22 107.8 54 92.6
Sed0015212 Sechium edule HOM05D004445 ORTHO05D005578 7.6e-22 107.5 53 92.5
unitig_699.g19769 Utricularia gibba HOM05D004445 ORTHO05D005578 7.6e-22 107.5 54 94.4
Lsat_1_v5_gn_2_85181 Lactuca sativa HOM05D004445 ORTHO05D005578 9.9e-22 107.1 51 98.0
MD02G1003600 Malus domestica HOM05D004445 ORTHO05D005578 9.9e-22 107.1 54 92.6
MD15G1146900 Malus domestica HOM05D004445 ORTHO05D005578 9.9e-22 107.1 54 92.6
CDE02G4113 Ceratophyllum demersum HOM05D004445 ORTHO05D005578 1.3e-21 106.7 52 94.2
DCAR_027508 Daucus carota HOM05D004445 ORTHO05D005578 1.3e-21 106.7 54 92.6
Eucgr.D00038 Eucalyptus grandis HOM05D004445 ORTHO05D005578 1.3e-21 106.7 52 94.2
FAN23G0186 Fragaria x ananassa HOM05D004445 ORTHO05D005578 1.3e-21 106.7 54 92.6
FAN26G2197 Fragaria x ananassa HOM05D004445 ORTHO05D005578 1.3e-21 106.7 54 92.6
HanXRQChr12g0372591 Helianthus annuus HOM05D004445 ORTHO05D005578 1.3e-21 106.7 51 98.0
RcHm_v2.0_Chr2g0084951 Rosa chinensis HOM05D004445 ORTHO05D005578 1.3e-21 106.7 54 92.6
Os04g0388900 Oryza sativa ssp. japonica HOM05D004445 ORTHO05D005578 1.7e-21 106.3 54 92.6
Prupe.7G267700 Prunus persica HOM05D004445 ORTHO05D005578 1.7e-21 106.3 54 90.7
Sp4g25890 Schrenkiella parvula HOM05D004445 ORTHO05D005578 1.7e-21 106.3 54 92.6
Aa31LG10G14060 Aethionema arabicum HOM05D004445 ORTHO05D005578 3.8e-21 105.1 54 90.7
FvH4_1g00440 Fragaria vesca HOM05D004445 ORTHO05D005578 4.9e-21 104.8 54 90.7
FAN28G1098 Fragaria x ananassa HOM05D004445 ORTHO05D005578 4.9e-21 104.8 54 90.7
AL5G41860 Arabidopsis lyrata HOM05D004445 ORTHO05D005578 8.4e-21 104.0 54 90.7
Ah.13g073310 Amaranthus hybridus HOM05D004445 ORTHO05D005578 1.1e-20 103.6 53 90.6
AL4G42690 Arabidopsis lyrata HOM05D004445 ORTHO05D005578 1.1e-20 103.6 54 87.0
BcaC08g45011 Brassica carinata HOM05D004445 ORTHO05D005578 1.4e-20 103.2 54 90.7
A07p24840 Brassica napus HOM05D004445 ORTHO05D005578 1.4e-20 103.2 54 90.7
C06p26430 Brassica napus HOM05D004445 ORTHO05D005578 1.4e-20 103.2 54 90.7
BolC6t37806H Brassica oleracea HOM05D004445 ORTHO05D005578 1.4e-20 103.2 54 90.7
BraA07t30128Z Brassica rapa HOM05D004445 ORTHO05D005578 1.4e-20 103.2 54 90.7
Mapoly0124s0040 Marchantia polymorpha HOM05D004445 ORTHO05D005578 1.4e-20 103.2 51 92.2
Aqoxy5G03981 Aquilegia oxysepala HOM05D004445 ORTHO05D005578 1.9e-20 102.8 52 92.3
Carub.0005s2653 Capsella rubella HOM05D004445 ORTHO05D005578 1.9e-20 102.8 54 88.9
FvH4_4g16190 Fragaria vesca HOM05D004445 ORTHO05D005578 1.9e-20 102.8 54 88.9
Nn7g38180 Nelumbo nucifera HOM05D004445 ORTHO05D005578 1.9e-20 102.8 63 82.5
Pp3c18_1280 Physcomitrium patens HOM05D004445 ORTHO05D005578 1.9e-20 102.8 51 90.2
TWI15G1072 Tripterygium wilfordii HOM05D004445 ORTHO05D005578 1.9e-20 102.8 51 94.1
BcaB02g08208 Brassica carinata HOM05D004445 ORTHO05D005578 4.2e-20 101.7 54 88.9
BcaC02g10088 Brassica carinata HOM05D004445 ORTHO05D005578 4.2e-20 101.7 54 88.9
A09p52090 Brassica napus HOM05D004445 ORTHO05D005578 4.2e-20 101.7 54 88.9
C04p32900 Brassica napus HOM05D004445 ORTHO05D005578 4.2e-20 101.7 54 88.9
BolC4t24853H Brassica oleracea HOM05D004445 ORTHO05D005578 4.2e-20 101.7 54 88.9
BraA09t40641Z Brassica rapa HOM05D004445 ORTHO05D005578 4.2e-20 101.7 54 88.9
AT2G43810 Arabidopsis thaliana HOM05D004445 ORTHO05D005578 5.4e-20 101.3 54 85.2
Carub.0004s2635 Capsella rubella HOM05D004445 ORTHO05D005578 5.4e-20 101.3 54 85.2
TWI60G1208 Tripterygium wilfordii HOM05D004445 ORTHO05D005578 5.4e-20 101.3 51 92.2
BraA04t15926Z Brassica rapa HOM05D004445 ORTHO05D005578 7.1e-20 100.9 54 88.9
CBR_g23546 Chara braunii HOM05D004445 ORTHO05D005578 7.1e-20 100.9 51 92.2
Pp3c22_1090 Physcomitrium patens HOM05D004445 ORTHO05D005578 7.1e-20 100.9 51 90.2
TWI15G0001 Tripterygium wilfordii HOM05D004445 ORTHO05D005578 7.1e-20 100.9 51 92.2
CARHR170150 Cardamine hirsuta HOM05D004445 ORTHO05D005578 9.3e-20 100.5 54 88.9
SMO197G0107 Selaginella moellendorffii HOM05D004445 ORTHO05D005578 9.3e-20 100.5 50 92.0
AT3G59810 Arabidopsis thaliana HOM05D004445 ORTHO05D005578 1.2e-19 100.1 54 87.0
MCO16G126 Micromonas commoda HOM05D004445 ORTHO05D005578 7.9e-19 97.4 46 97.8
A04p02010 Brassica napus HOM05D004445 ORTHO05D005578 3.9e-18 95.1 44 100.0
Cre03.g151750 Chlamydomonas reinhardtii HOM05D004445 ORTHO05D005578 1.1e-17 93.6 48 89.6
Sc13g0007390 Simmondsia chinensis HOM05D004445 ORTHO05D005578 4.8e-16 88.2 51 84.3
PRCOL_00006325 Prasinoderma coloniale HOM05D004445 ORTHO05D005578 8.1e-16 87.4 47 85.1
AagrBONN_evm.TU.Sc2ySwM_228.4655 Anthoceros agrestis HOM05D004445 ORTHO05D005578 1.2e-14 83.6 38 100.0
Eucgr.L00039 Eucalyptus grandis HOM05D004445 ORTHO05D005578 1.2e-14 83.6 38 100.0
Gorai.005G008600 Gossypium raimondii HOM05D004445 ORTHO05D005578 1.2e-14 83.6 38 100.0
TAR365G0334 Trochodendron aralioides HOM05D004445 ORTHO05D005578 1.2e-14 83.6 38 100.0
Haze_27419 Corylus avellana HOM05D004445 ORTHO05D005578 2.2e-13 79.3 47 74.5
C01p49570 Brassica napus HOM05D004445 ORTHO05D021776 2.3e-10 69.3 32 96.9
BolC1t04912H Brassica oleracea HOM05D004445 ORTHO05D021776 2.3e-10 69.3 32 96.9
BcaC07g40509 Brassica carinata HOM05D033546 ORTHO05D032394 8.7e-10 67.4 31 96.8
BcaC09g48456 Brassica carinata HOM05D004445 ORTHO05D021776 1.1e-09 67.0 31 96.8
Eucgr.G01588 Eucalyptus grandis HOM05D004445 ORTHO05D005578 1.4e-07 60.1 27 100.0
BolC9t54836H Brassica oleracea HOM05D004445 ORTHO05D021776 2.4e-07 59.3 30 93.3
Cfa027073 Carpinus fangiana HOM05D004445 ORTHO05D005578 6.9e-07 57.8 38 65.8
C07p33090 Brassica napus HOM05D004445 ORTHO05D021776 4.5e-06 55.1 29 89.7
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 5.8e-06 54.7 70 42.9
MBI17_g44062_MAGBIO Magnolia biondii HOM05D004445 ORTHO05D005578 7.6e-06 54.3 24 100.0


User provided reference genes

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