Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006033 Camellia sinensis var. sinensis HOM05D005848 ORTHO05D007532 0.0e+00 1236.1 641 100.0
Dinv36081 Davidia involucrata HOM05D005848 ORTHO05D007532 1.5e-270 936.0 632 75.3
Actinidia22546 Actinidia chinensis HOM05D005848 ORTHO05D007532 1.1e-268 929.9 605 78.0
vmacro11198 Vaccinium macrocarpon HOM05D005848 ORTHO05D007532 2.3e-266 922.2 631 74.0
Rhsim07G0239300 Rhododendron simsii HOM05D005848 ORTHO05D007532 9.5e-265 916.8 630 73.7
vmacro04526 Vaccinium macrocarpon HOM05D005848 ORTHO05D007532 2.8e-264 915.2 631 73.7
Lj4A40T46 Lonicera japonica HOM05D005848 ORTHO05D007532 2.0e-259 899.0 622 74.6
Prupe.1G379500 Prunus persica HOM05D005848 ORTHO05D007532 3.5e-259 898.3 630 72.5
CsaV3_2G028680 Cucumis sativus L. HOM05D005848 ORTHO05D007532 1.1e-257 893.3 631 71.0
MELO3C010940.2 Cucumis melo HOM05D005848 ORTHO05D007532 1.6e-256 889.4 631 70.8
QL02p008596 Quercus lobata HOM05D005848 ORTHO05D007532 2.1e-256 889.0 628 72.3
Potri.002G260700 Populus trichocarpa HOM05D005848 ORTHO05D007532 1.8e-255 885.9 632 71.7
TAR381G1506 Trochodendron aralioides HOM05D005848 ORTHO05D007532 5.2e-255 884.4 632 71.2
Cfa018151 Carpinus fangiana HOM05D005848 ORTHO05D007532 2.6e-254 882.1 627 71.5
CiPaw.16G056600 Carya illinoinensis HOM05D005848 ORTHO05D007532 4.4e-254 881.3 633 70.3
Cpa.g.sc36.76 Carica papaya HOM05D005848 ORTHO05D007532 2.2e-253 879.0 633 71.1
ClCG08G015110 Citrullus lanatus HOM05D005848 ORTHO05D007532 3.7e-253 878.2 660 68.0
FAN15G3081 Fragaria x ananassa HOM05D005848 ORTHO05D007532 4.9e-253 877.9 627 71.8
FAN20G0176 Fragaria x ananassa HOM05D005848 ORTHO05D007532 4.9e-253 877.9 625 70.6
FAN20G3094 Fragaria x ananassa HOM05D005848 ORTHO05D007532 4.9e-253 877.9 625 70.6
Nn1g04993 Nelumbo nucifera HOM05D005848 ORTHO05D007532 4.9e-253 877.9 627 70.5
FvH4_2g39810 Fragaria vesca HOM05D005848 ORTHO05D007532 6.4e-253 877.5 625 72.2
Sed0003570 Sechium edule HOM05D005848 ORTHO05D007532 6.4e-253 877.5 635 69.3
Manes.18G027000 Manihot esculenta HOM05D005848 ORTHO05D007532 1.1e-252 876.7 631 70.0
RcHm_v2.0_Chr6g0301031 Rosa chinensis HOM05D005848 ORTHO05D007532 7.0e-252 874.0 633 71.2
MD08G1031900 Malus domestica HOM05D005848 ORTHO05D007532 9.2e-252 873.6 628 70.7
TWI56G0568 Tripterygium wilfordii HOM05D005848 ORTHO05D007532 1.2e-251 873.2 632 69.9
FAN27G0156 Fragaria x ananassa HOM05D005848 ORTHO05D007532 4.6e-251 871.3 626 71.4
Thecc.08G026700 Theobroma cacao HOM05D005848 ORTHO05D007532 4.6e-251 871.3 627 71.8
Haze_17969 Corylus avellana HOM05D005848 ORTHO05D007532 5.9e-251 870.9 626 70.4
Duzib116G0609 Durio zibethinus HOM05D005848 ORTHO05D007532 2.3e-250 869.0 625 70.6
Gorai.002G128000 Gossypium raimondii HOM05D005848 ORTHO05D007532 1.5e-249 866.3 631 70.7
Lalb_Chr14g0369301 Lupinus albus HOM05D005848 ORTHO05D007532 1.9e-249 865.9 636 68.7
MD15G1027800 Malus domestica HOM05D005848 ORTHO05D007532 1.9e-249 865.9 628 70.2
Sabra02G0198400 Salix brachista HOM05D005848 ORTHO05D007532 2.5e-249 865.5 633 70.8
Gohir.A01G115800 Gossypium hirsutum HOM05D005848 ORTHO05D007532 4.3e-249 864.8 631 70.5
Lsat_1_v5_gn_1_17721 Lactuca sativa HOM05D005848 ORTHO05D007532 7.3e-249 864.0 631 70.8
TWI36G0400 Tripterygium wilfordii HOM05D005848 ORTHO05D007532 7.3e-249 864.0 632 69.1
Gohir.D01G104100 Gossypium hirsutum HOM05D005848 ORTHO05D007532 1.6e-248 862.8 631 70.4
DCAR_020974 Daucus carota HOM05D005848 ORTHO05D007532 2.8e-248 862.1 618 69.4
THA.LOC104809061 Tarenaya hassleriana HOM05D005848 ORTHO05D007532 2.2e-245 852.4 635 67.9
Sopen04g033930 Solanum pennellii HOM05D005848 ORTHO05D007532 4.9e-245 851.3 637 67.8
Solyc04g080340.3 Solanum lycopersicum HOM05D005848 ORTHO05D007532 1.1e-244 850.1 637 69.1
Nitab4.5_0005373g0030 Nicotiana tabacum HOM05D005848 ORTHO05D007532 9.2e-244 847.0 641 69.7
Aqoxy6G01108 Aquilegia oxysepala HOM05D005848 ORTHO05D007532 1.6e-243 846.3 632 68.2
Nitab4.5_0006280g0010 Nicotiana tabacum HOM05D005848 ORTHO05D007532 6.0e-243 844.3 642 68.8
Hund17082 Selenicereus undatus HOM05D005848 ORTHO05D007532 1.0e-242 843.6 631 67.4
SalBow7G2715 Salvia bowleyana HOM05D005848 ORTHO05D007532 1.1e-241 840.1 601 69.9
Oeu049954.1 Olea europaea HOM05D005848 ORTHO05D007532 4.3e-241 838.2 604 71.9
Migut.C00727 Erythranthe guttata HOM05D005848 ORTHO05D007532 1.6e-240 836.3 638 68.2
PGR031G0193 Punica granatum HOM05D005848 ORTHO05D007532 1.6e-240 836.3 632 67.2
Sc02g0006150 Simmondsia chinensis HOM05D005848 ORTHO05D007532 2.8e-240 835.5 626 67.7
Ciclev10003946m.g Citrus clementina HOM05D005848 ORTHO05D007532 3.6e-240 835.1 587 71.6
Glyma.14G075000 Glycine max HOM05D005848 ORTHO05D007532 3.6e-240 835.1 627 67.6
Glyma.17G250400 Glycine max HOM05D005848 ORTHO05D007532 3.6e-240 835.1 630 67.8
MBI16_g31221_MAGBIO Magnolia biondii HOM05D005848 ORTHO05D007532 3.6e-240 835.1 638 67.1
HanXRQChr02g0042111 Helianthus annuus HOM05D005848 ORTHO05D007532 4.7e-240 834.7 625 69.3
Peaxi162Scf00417g01212 Petunia axillaris HOM05D005848 ORTHO05D007532 4.7e-240 834.7 633 68.6
Eucgr.F01897 Eucalyptus grandis HOM05D005848 ORTHO05D007532 6.2e-240 834.3 628 68.2
GSVIVG01009707001 Vitis vinifera HOM05D005848 ORTHO05D007532 8.1e-240 833.9 489 82.4
CAN.G1226.12 Capsicum annuum HOM05D005848 ORTHO05D007532 1.4e-239 833.2 635 68.3
PGSC0003DMG400004542 Solanum tuberosum HOM05D005848 ORTHO05D007532 1.8e-239 832.8 637 67.7
Phvul.001G014532 Phaseolus vulgaris HOM05D005848 ORTHO05D007532 1.2e-238 830.1 629 68.2
Ca_13375_v3 Cicer arietinum L. HOM05D005848 ORTHO05D007532 2.0e-238 829.3 629 66.8
Carub.0002s2201 Capsella rubella HOM05D005848 ORTHO05D007532 7.5e-238 827.4 635 65.8
SGA_v2.0_scaffold54G19521 Striga asiatica HOM05D005848 ORTHO05D007532 7.5e-238 827.4 628 67.8
Lj5g0008078 Lotus japonicus HOM05D005848 ORTHO05D007532 8.3e-237 823.9 627 67.8
TPR.G20173 Trifolium pratense HOM05D005848 ORTHO05D007532 3.2e-236 822.0 627 67.8
Sp5g30360 Schrenkiella parvula HOM05D005848 ORTHO05D007532 9.2e-236 820.5 634 65.6
VMungo0647G1182 Vigna mungo HOM05D005848 ORTHO05D007532 2.1e-235 819.3 628 66.9
EL10Ac1g00774 Beta vulgaris HOM05D005848 ORTHO05D007532 2.7e-235 818.9 668 63.5
arahy.Tifrunner.gnm1.ann1.K656SJ Arachis hypogaea HOM05D005848 ORTHO05D007532 3.5e-235 818.5 632 66.3
arahy.Tifrunner.gnm1.ann1.R41T5G Arachis hypogaea HOM05D005848 ORTHO05D007532 3.5e-235 818.5 632 66.3
PSO541G0294 Papaver somniferum HOM05D005848 ORTHO05D007532 7.8e-235 817.4 627 67.5
AL2G35110 Arabidopsis lyrata HOM05D005848 ORTHO05D007532 1.7e-234 816.2 635 65.7
C06p49180 Brassica napus HOM05D005848 ORTHO05D007532 2.3e-234 815.8 639 65.7
CANSAT35G0174 Cannabis sativa HOM05D005848 ORTHO05D007532 2.3e-234 815.8 636 67.1
CARHR068530 Cardamine hirsuta HOM05D005848 ORTHO05D007532 3.0e-234 815.5 630 65.7
ECA247G2683 Erigeron canadensis HOM05D005848 ORTHO05D007532 3.0e-234 815.5 633 67.0
BraA07t30539Z Brassica rapa HOM05D005848 ORTHO05D007532 8.6e-234 813.9 634 65.8
AUR62013733 Chenopodium quinoa HOM05D005848 ORTHO05D007532 1.5e-233 813.1 631 65.9
BolC6t39951H Brassica oleracea HOM05D005848 ORTHO05D007532 2.5e-233 812.4 639 65.6
Psat6g008800 Pisum sativum HOM05D005848 ORTHO05D007532 3.3e-233 812.0 626 67.6
PSO675G8513 Papaver somniferum HOM05D005848 ORTHO05D007532 4.3e-233 811.6 627 67.3
AT1G75200 Arabidopsis thaliana HOM05D005848 ORTHO05D007532 5.6e-233 811.2 635 65.0
A07p40790 Brassica napus HOM05D005848 ORTHO05D007532 5.6e-233 811.2 639 65.6
BraA07t31621Z Brassica rapa HOM05D005848 ORTHO05D007532 5.6e-233 811.2 639 65.6
Aa31LG4G5410 Aethionema arabicum HOM05D005848 ORTHO05D007532 1.1e-231 807.0 628 65.4
Ah.05g173260 Amaranthus hybridus HOM05D005848 ORTHO05D007532 1.1e-231 807.0 627 65.4
Thhalv10018304m.g Eutrema salsugineum HOM05D005848 ORTHO05D007532 2.0e-230 802.7 600 67.7
CDE01G0181 Ceratophyllum demersum HOM05D005848 ORTHO05D007532 1.9e-228 796.2 653 63.2
COL.COLO4_26317 Corchorus olitorius HOM05D005848 ORTHO05D007532 2.4e-228 795.8 595 68.1
Atru.chr13.482 Acer truncatum HOM05D005848 ORTHO05D007532 6.6e-226 787.7 488 80.3
unitig_37.g12994 Utricularia gibba HOM05D005848 ORTHO05D007532 1.8e-223 779.6 594 67.5
Os03g0775300 Oryza sativa ssp. japonica HOM05D005848 ORTHO05D007532 7.1e-220 767.7 543 70.3
HPP92_012274 Vanilla planifolia HOM05D005848 ORTHO05D007532 2.1e-219 766.1 625 61.6
Sed0016731 Sechium edule HOM05D005848 ORTHO05D007532 1.7e-218 763.1 587 68.0
A07p28980 Brassica napus HOM05D005848 ORTHO05D007532 3.0e-218 762.3 496 75.0
Zm00001eb059170 Zea mays HOM05D005848 ORTHO05D007532 4.3e-217 758.4 595 63.9
BcaB02g07015 Brassica carinata HOM05D005848 ORTHO05D007532 1.5e-214 750.0 485 75.9
C06p32750 Brassica napus HOM05D005848 ORTHO05D007532 3.4e-214 748.8 601 65.1
BolC6t38398H Brassica oleracea HOM05D005848 ORTHO05D007532 3.8e-213 745.3 606 64.5
ATR0733G119 Amborella trichopoda HOM05D005848 ORTHO05D007532 7.9e-211 737.6 659 59.6
arahy.Tifrunner.gnm1.ann1.U1EDB6 Arachis hypogaea HOM05D005848 ORTHO05D007532 2.3e-210 736.1 635 61.4
Pp3c8_14160 Physcomitrium patens HOM05D005848 ORTHO05D007532 3.9e-202 708.8 652 56.6
SMO119G0034 Selaginella moellendorffii HOM05D005848 ORTHO05D007532 3.9e-202 708.8 600 60.7
AUR62023420 Chenopodium quinoa HOM05D005848 ORTHO05D007532 1.6e-200 703.4 631 60.2
Mapoly0010s0191 Marchantia polymorpha HOM05D005848 ORTHO05D007532 1.2e-198 697.2 622 57.7
AagrBONN_evm.TU.Sc2ySwM_362.2225 Anthoceros agrestis HOM05D005848 ORTHO05D007532 2.2e-197 693.0 628 56.1
vmacro04525 Vaccinium macrocarpon HOM05D005848 ORTHO05D007532 4.2e-196 688.7 433 79.2
MCO11G535 Micromonas commoda HOM05D005848 ORTHO05D007532 5.0e-165 585.5 630 50.0
Cre14.g623300 Chlamydomonas reinhardtii HOM05D005848 ORTHO05D007532 1.2e-158 564.3 506 55.9
Actinidia15328 Actinidia chinensis HOM05D005848 ORTHO05D007532 2.7e-155 553.1 626 51.8
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 4.5e-150 535.8 506 53.6
CBR_g42175 Chara braunii HOM05D005848 ORTHO05D007532 5.8e-137 492.3 315 72.1
MSTRG.1277 Avicennia marina HOM05D005848 ORTHO05D007532 1.6e-134 484.2 401 64.3
Cc10_g02890 Coffea canephora HOM05D005848 ORTHO05D007532 4.4e-129 466.1 260 84.6
Medtr1g022225 Medicago truncatula HOM05D005848 ORTHO05D007532 1.1e-122 444.9 250 82.8
Cfa025522 Carpinus fangiana HOM05D005848 ORTHO05D007532 1.7e-120 437.6 515 48.9
QL02p008579 Quercus lobata HOM05D005848 ORTHO05D007532 4.6e-118 429.5 235 86.8
Cc10_g02880 Coffea canephora HOM05D005848 ORTHO05D007532 2.9e-104 383.6 374 57.8
Medtr1g022235 Medicago truncatula HOM05D005848 ORTHO05D007532 1.9e-100 370.9 371 57.4
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 2.6e-73 280.8 168 79.8
Os10g0365900 Oryza sativa ssp. japonica HOM05D005848 ORTHO05D007532 8.3e-35 152.9 104 71.2
arahy.Tifrunner.gnm1.ann1.B18DRP Arachis hypogaea HOM05D005848 ORTHO05D007532 1.2e-28 132.5 246 40.2
Gohir.D05G197166 Gossypium hirsutum HOM05D005848 ORTHO05D007532 1.4e-26 125.6 81 72.8
Hma1.2p1_1139F.1_g260870 Hydrangea macrophylla HOM05D005848 ORTHO05D007532 3.5e-25 120.9 68 86.8
CiPaw.16G057000 Carya illinoinensis HOM05D005848 ORTHO05D007532 1.5e-20 105.5 166 40.4
Nn7g38354 Nelumbo nucifera HOM05D005848 ORTHO05D007532 4.1e-18 97.4 59 78.0
Lj6g0011150 Lotus japonicus HOM05D000370 ORTHO05D001366 9.5e-15 86.3 69 62.3
arahy.Tifrunner.gnm1.ann1.T0WXUF Arachis hypogaea HOM05D005848 ORTHO05D038829 4.7e-14 84.0 73 58.9
Lj1g0001767 Lotus japonicus HOM05D005848 ORTHO05D038829 6.2e-14 83.6 39 89.7
CBR_g26428 Chara braunii HOM05D005848 ORTHO05D007532 1.9e-10 72.0 289 23.5
arahy.Tifrunner.gnm1.ann1.0TG4XQ Arachis hypogaea HOM05D008504 ORTHO05D010707 3.0e-08 64.7 212 30.2
arahy.Tifrunner.gnm1.ann1.2I4AA8 Arachis hypogaea HOM05D008504 ORTHO05D010707 3.0e-08 64.7 212 30.2
arahy.Tifrunner.gnm1.ann1.5RQB9J Arachis hypogaea HOM05D008504 ORTHO05D010707 3.0e-08 64.7 212 30.2
arahy.Tifrunner.gnm1.ann1.PE8RGD Arachis hypogaea HOM05D008504 ORTHO05D010707 3.0e-08 64.7 212 30.2
Gohir.D05G197232 Gossypium hirsutum HOM05D005848 ORTHO05D047491 5.1e-08 63.9 58 55.2
Gorai.009G202100 Gossypium raimondii HOM05D005848 ORTHO05D047491 5.1e-08 63.9 58 55.2
Gohir.A05G194001 Gossypium hirsutum HOM05D005848 ORTHO05D218087 4.3e-07 60.8 40 65.0
arahy.Tifrunner.gnm1.ann1.PBP9SE Arachis hypogaea HOM05D008504 ORTHO05D010707 9.5e-07 59.7 101 37.6
arahy.Tifrunner.gnm1.ann1.UJY401 Arachis hypogaea HOM05D008504 ORTHO05D010707 9.5e-07 59.7 101 37.6
arahy.Tifrunner.gnm1.ann1.FHH1YD Arachis hypogaea HOM05D008504 ORTHO05D010707 1.2e-06 59.3 111 36.0
arahy.Tifrunner.gnm1.ann1.3X8B6N Arachis hypogaea HOM05D008504 ORTHO05D010707 3.6e-06 57.8 102 36.3
arahy.Tifrunner.gnm1.ann1.HMY8CZ Arachis hypogaea HOM05D008504 ORTHO05D010707 3.6e-06 57.8 51 56.9
arahy.Tifrunner.gnm1.ann1.DKU1F8 Arachis hypogaea HOM05D008504 ORTHO05D010707 4.7e-06 57.4 171 30.4
arahy.Tifrunner.gnm1.ann1.A1ZBG7 Arachis hypogaea HOM05D008504 ORTHO05D010707 6.2e-06 57.0 175 29.1
arahy.Tifrunner.gnm1.ann1.QZ4EVV Arachis hypogaea HOM05D008504 ORTHO05D010707 6.2e-06 57.0 175 29.1


User provided reference genes

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