Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 1.9e-124 449.1 223 100.0
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 8.8e-109 397.1 219 87.7
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 4.3e-108 394.8 217 88.5
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 7.4e-108 394.0 223 83.4
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.5e-105 384.8 222 83.3
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.7e-104 382.9 223 80.7
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 2.9e-104 382.1 223 82.5
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 3.8e-104 381.7 223 80.7
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 5.0e-104 381.3 223 81.2
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 1.1e-103 380.2 219 80.8
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 1.9e-103 379.4 223 81.6
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 2.5e-103 379.0 223 79.8
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 3.2e-103 378.6 219 82.2
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.2e-102 376.7 223 80.3
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 1.2e-102 376.7 224 81.2
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 2.7e-102 375.6 222 79.3
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 2.7e-102 375.6 223 79.8
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 7.9e-102 374.0 223 79.8
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.9e-102 374.0 224 81.2
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 1.8e-101 372.9 224 81.2
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.8e-101 372.9 224 80.8
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.0e-101 372.1 212 81.6
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 3.9e-101 371.7 260 70.8
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 3.9e-101 371.7 260 70.8
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 5.1e-101 371.3 224 79.0
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.5e-100 369.8 223 79.8
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.5e-100 369.8 215 80.9
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.5e-100 369.8 215 80.9
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 2.0e-100 369.4 223 78.5
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 2.6e-100 369.0 223 79.8
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 1.7e-99 366.3 224 77.7
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 3.7e-99 365.2 238 76.1
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.7e-99 365.2 225 79.6
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 1.4e-98 363.2 215 79.1
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 1.8e-98 362.8 223 78.5
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 4.1e-98 361.7 223 77.6
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 5.3e-98 361.3 218 79.4
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 1.6e-97 359.8 223 75.3
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 2.6e-97 359.0 224 75.4
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 4.5e-97 358.2 223 76.7
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 5.9e-97 357.8 223 72.6
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 5.9e-97 357.8 223 71.7
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 7.7e-97 357.5 219 78.1
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 1.7e-96 356.3 252 71.8
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 3.8e-96 355.1 251 70.5
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 1.1e-95 353.6 224 77.7
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 1.5e-95 353.2 219 79.9
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 3.2e-95 352.1 215 74.9
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.2e-94 350.1 223 74.0
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 2.7e-94 349.0 214 72.0
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 4.7e-94 348.2 224 76.8
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 4.7e-94 348.2 223 75.3
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 6.1e-94 347.8 218 76.1
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 1.4e-93 346.7 265 66.4
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 2.3e-93 345.9 218 72.5
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 8.8e-93 344.0 215 79.1
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 1.1e-92 343.6 221 74.2
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 1.5e-92 343.2 218 72.9
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 3.3e-92 342.0 218 72.9
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.7e-91 339.7 218 72.9
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 2.2e-91 339.3 223 73.1
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 3.7e-91 338.6 215 74.9
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 3.1e-90 335.5 218 71.6
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 7.0e-90 334.3 218 71.6
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 3.5e-89 332.0 180 88.9
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 2.2e-88 329.3 218 70.2
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 2.2e-88 329.3 215 71.2
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 1.9e-87 326.2 215 69.3
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 9.4e-87 323.9 217 68.7
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 9.4e-87 323.9 217 68.7
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.2e-86 323.6 202 72.8
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-86 323.6 221 67.4
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 2.1e-86 322.8 223 67.7
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 2.7e-86 322.4 217 68.2
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 3.6e-86 322.0 215 68.8
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 3.6e-86 322.0 215 68.8
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 3.6e-86 322.0 215 68.8
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 3.6e-86 322.0 215 69.8
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 6.1e-86 321.2 243 66.3
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.8e-85 319.7 218 67.4
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.8e-85 319.7 215 69.3
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 8.8e-85 317.4 215 67.4
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 8.8e-85 317.4 218 66.5
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 7.5e-84 314.3 215 67.0
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 9.8e-84 313.9 215 67.4
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 1.7e-83 313.2 217 66.8
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 8.3e-83 310.8 223 64.6
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 8.3e-83 310.8 215 67.0
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 1.1e-82 310.5 218 71.6
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 2.4e-82 309.3 223 65.5
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 3.1e-82 308.9 216 65.3
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 3.1e-82 308.9 210 68.1
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 5.4e-82 308.1 212 66.5
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 2.7e-81 305.8 217 64.5
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 1.0e-80 303.9 211 66.8
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 2.9e-80 302.4 216 63.0
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 6.5e-80 301.2 215 64.2
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.5e-80 301.2 215 66.0
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.5e-79 300.1 217 64.1
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 2.1e-78 296.2 218 64.7
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-78 296.2 216 63.9
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 2.3e-77 292.7 171 84.8
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 5.2e-77 291.6 217 62.2
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.5e-76 290.0 225 69.3
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 2.3e-72 276.2 170 78.2
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 1.9e-71 273.1 165 78.2
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 7.3e-71 271.2 218 60.6
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 3.6e-70 268.9 225 53.3
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 4.0e-69 265.4 165 75.8
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 4.0e-69 265.4 165 75.8
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.0e-69 265.4 215 60.0
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.2e-68 263.8 189 65.1
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 3.4e-68 262.3 216 52.8
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 3.4e-68 262.3 216 53.7
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-67 260.4 185 65.9
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.3e-67 257.7 221 58.8
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.6e-65 253.4 166 71.1
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.0e-64 249.2 141 83.7
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.6e-64 248.1 213 57.7
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.6e-62 243.4 141 80.1
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 6.2e-62 241.5 186 63.4
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.0e-61 240.7 169 66.3
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 1.2e-60 237.3 210 51.4
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 4.4e-60 235.3 209 49.8
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 3.2e-58 229.2 142 76.1
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 2.0e-57 226.5 164 65.9
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 1.0e-56 224.2 159 66.0
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 2.3e-56 223.0 211 50.2
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 3.3e-55 219.2 212 46.2
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 2.8e-54 216.1 127 83.5
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 3.6e-54 215.7 171 60.2
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 2.3e-53 213.0 151 70.2
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 2.6e-52 209.5 214 45.8
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.8e-52 208.4 211 52.1
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.4e-51 204.9 143 65.7
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.5e-49 199.1 166 57.2
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 2.3e-48 196.4 220 40.5
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 3.0e-48 196.1 191 47.1
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 6.6e-48 194.9 145 64.1
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.1e-45 187.6 131 67.9
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 6.4e-43 178.3 123 69.1
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 7.1e-42 174.9 128 69.5
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 1.6e-41 173.7 168 54.2
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.6e-41 172.2 133 62.4
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-40 170.6 134 60.4
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.6e-39 165.2 117 66.7
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.7e-32 143.7 101 67.3
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 5.4e-26 122.1 122 54.1
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.7e-24 115.2 143 44.1
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 1.9e-23 113.6 76 69.7
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 2.1e-22 110.2 83 67.5
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 2.1e-22 110.2 81 64.2
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 6.2e-22 108.6 63 76.2
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 6.9e-21 105.1 130 46.2
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 3.9e-16 89.4 52 73.1
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 5.6e-15 85.5 68 58.8
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-14 84.3 64 64.1
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 4.0e-13 79.3 97 45.4
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 3.9e-08 62.8 55 56.4
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 3.9e-08 62.8 55 56.4
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 6.7e-08 62.0 54 57.4


User provided reference genes

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