Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 7.0e-86 320.5 150 100.0
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.6e-66 256.1 119 100.0
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.4e-41 172.6 132 65.9
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 2.9e-39 165.6 118 66.9
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 2.0e-32 142.9 113 59.3
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 6.0e-29 131.3 130 47.7
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 5.1e-28 128.3 113 59.3
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 2.4e-25 119.4 108 55.6
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 3.1e-25 119.0 91 67.0
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 1.5e-24 116.7 128 48.4
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 1.5e-24 116.7 131 41.2
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 1.0e-23 114.0 129 45.0
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 1.7e-23 113.2 121 51.2
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 1.7e-23 113.2 128 46.9
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 2.9e-23 112.5 177 36.2
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 3.2e-22 109.0 128 45.3
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 3.2e-22 109.0 148 41.2
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 3.2e-22 109.0 129 48.1
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 5.5e-22 108.2 133 45.9
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 6.0e-21 104.8 129 40.3
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 1.0e-20 104.0 124 47.6
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 2.3e-20 102.8 116 50.0
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 3.0e-20 102.4 126 46.8
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 1.9e-19 99.8 120 41.7
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 3.3e-19 99.0 113 46.9
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 1.3e-18 97.1 108 46.3
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 3.7e-18 95.5 145 38.6
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 1.4e-17 93.6 134 39.6
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 1.8e-17 93.2 112 41.1
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 2.4e-17 92.8 143 39.2
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.1e-17 92.0 131 39.7
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 5.3e-17 91.7 142 39.4
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 6.9e-17 91.3 139 34.5
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 6.9e-17 91.3 109 43.1
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 1.5e-16 90.1 122 40.2
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 2.0e-16 89.7 106 45.3
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 7.6e-16 87.8 149 36.2
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.7e-15 86.7 106 45.3
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 2.9e-15 85.9 153 35.3
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 2.9e-15 85.9 153 35.3
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 3.8e-15 85.5 136 39.7
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 3.8e-15 85.5 136 39.7
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 2.5e-14 82.8 160 34.4
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.5e-14 82.8 160 34.4
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 3.2e-14 82.4 139 35.3
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.2e-13 80.5 163 33.1
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 2.1e-13 79.7 163 31.9
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 2.7e-13 79.3 138 35.5
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 2.7e-13 79.3 160 31.9
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 2.7e-13 79.3 115 39.1
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 7.9e-13 77.8 163 31.9
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 7.9e-13 77.8 111 33.3
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 1.0e-12 77.4 106 39.6
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.0e-12 75.9 163 31.3
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 8.8e-12 74.3 140 33.6
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 1.5e-11 73.6 109 37.6
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 1.5e-11 73.6 112 37.5
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 7.4e-11 71.2 107 37.4
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 9.7e-11 70.9 132 37.9
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 9.7e-11 70.9 137 32.8
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 9.7e-11 70.9 107 33.6
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.3e-10 70.5 189 29.1
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 2.8e-10 69.3 112 33.9
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 3.7e-10 68.9 113 31.0
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 4.8e-10 68.6 107 36.4
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 4.8e-10 68.6 68 45.6
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 4.8e-10 68.6 119 31.1
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 6.3e-10 68.2 107 38.3
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 8.2e-10 67.8 109 35.8
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 1.1e-09 67.4 120 31.7
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 1.1e-09 67.4 107 38.3
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 1.1e-09 67.4 119 31.1
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 1.4e-09 67.0 102 39.2
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 1.4e-09 67.0 104 36.5
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 1.4e-09 67.0 179 29.1
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 1.4e-09 67.0 165 30.3
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 1.4e-09 67.0 122 36.9
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 1.8e-09 66.6 116 31.9
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.8e-09 66.6 116 35.3
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 2.4e-09 66.2 183 27.3
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.4e-09 66.2 111 35.1
Rhsim05G0193300 Rhododendron simsii HOM05D022761 ORTHO05D022494 2.4e-09 66.2 106 32.1
RhsimUnG0081700 Rhododendron simsii HOM05D022761 ORTHO05D022494 2.4e-09 66.2 106 32.1
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 3.1e-09 65.9 113 34.5
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 3.1e-09 65.9 110 34.5
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 4.1e-09 65.5 117 35.0
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 5.3e-09 65.1 110 34.5
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 5.3e-09 65.1 110 36.4
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 5.3e-09 65.1 110 34.5
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 6.9e-09 64.7 105 32.4
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 6.9e-09 64.7 121 34.7
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 6.9e-09 64.7 117 35.9
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 9.1e-09 64.3 113 38.1
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 9.1e-09 64.3 119 32.8
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 9.1e-09 64.3 107 37.4
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 9.1e-09 64.3 107 36.4
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 9.1e-09 64.3 119 32.8
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 9.1e-09 64.3 112 33.0
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 9.1e-09 64.3 110 36.4
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 1.2e-08 63.9 119 32.8
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 1.2e-08 63.9 107 36.4
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.5e-08 63.5 116 33.6
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 2.6e-08 62.8 110 32.7
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 2.6e-08 62.8 110 33.6
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 3.4e-08 62.4 116 31.9
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 3.4e-08 62.4 107 36.4
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 3.4e-08 62.4 108 36.1
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 4.5e-08 62.0 117 31.6
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 4.5e-08 62.0 110 33.6
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 4.5e-08 62.0 107 33.6
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 4.5e-08 62.0 110 36.4
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 4.5e-08 62.0 128 32.0
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.9e-08 61.6 158 32.9
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 7.7e-08 61.2 110 35.5
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.0e-07 60.8 124 29.0
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 1.0e-07 60.8 191 24.6
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 1.3e-07 60.5 122 30.3
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 1.3e-07 60.5 121 30.6
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 1.3e-07 60.5 116 32.8
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 1.3e-07 60.5 121 30.6
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 1.3e-07 60.5 121 30.6
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 1.3e-07 60.5 110 33.6
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 1.7e-07 60.1 114 32.5
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 1.7e-07 60.1 114 32.5
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 1.7e-07 60.1 106 30.2
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 2.2e-07 59.7 121 32.2
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 2.2e-07 59.7 112 36.6
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 2.2e-07 59.7 175 26.3
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 2.2e-07 59.7 102 35.3
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 2.2e-07 59.7 71 39.4
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 2.9e-07 59.3 115 32.2
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 2.9e-07 59.3 118 32.2
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 3.8e-07 58.9 149 30.9
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 5.0e-07 58.5 104 32.7
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 5.0e-07 58.5 119 29.4
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 6.5e-07 58.2 125 31.2
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 6.5e-07 58.2 110 33.6
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 6.5e-07 58.2 107 31.8
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 6.5e-07 58.2 111 36.9
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 6.5e-07 58.2 102 33.3
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 1.1e-06 57.4 118 31.4
Haze_24100 Corylus avellana HOM05D004190 ORTHO05D004692 1.1e-06 57.4 106 33.0
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 1.4e-06 57.0 120 32.5
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 1.4e-06 57.0 106 31.1
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.9e-06 56.6 111 33.3
CAN.G745.25 Capsicum annuum HOM05D004190 ORTHO05D004692 1.9e-06 56.6 108 33.3
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 2.5e-06 56.2 132 32.6
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.5e-06 56.2 73 37.0
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 2.5e-06 56.2 100 34.0
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 3.2e-06 55.8 112 32.1
CAN.G745.27 Capsicum annuum HOM05D004190 ORTHO05D004692 4.2e-06 55.5 101 32.7
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 4.2e-06 55.5 114 30.7
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 4.2e-06 55.5 105 36.2
Glyma.15G040900 Glycine max HOM05D006496 ORTHO05D008390 7.2e-06 54.7 45 51.1
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 9.4e-06 54.3 117 30.8
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 9.4e-06 54.3 106 32.1
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 9.4e-06 54.3 100 32.0
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 9.4e-06 54.3 109 31.2


User provided reference genes

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