Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 5.8e-207 724.2 411 100.0
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 4.1e-136 488.8 432 69.4
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 5.3e-136 488.4 447 66.7
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 9.4e-133 477.6 431 69.8
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.3e-129 467.2 434 70.5
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 1.5e-125 453.8 431 67.3
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 2.2e-121 439.9 428 65.0
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 5.9e-119 431.8 418 62.4
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 8.5e-118 427.9 433 61.2
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.6e-116 423.7 427 62.3
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 2.7e-116 422.9 430 61.6
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 4.7e-116 422.2 452 61.1
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 4.4e-114 415.6 432 63.7
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 4.9e-113 412.1 424 58.5
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 4.9e-113 412.1 424 58.5
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 2.4e-112 409.8 466 56.0
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 7.7e-111 404.8 461 59.9
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 1.7e-110 403.7 461 58.8
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 1.1e-109 401.0 424 58.3
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 4.2e-109 399.1 438 57.8
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 5.6e-109 398.7 464 56.5
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 5.6e-109 398.7 443 57.3
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 9.5e-109 397.9 451 54.8
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.6e-108 397.1 434 58.5
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.0e-107 394.4 450 56.0
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 3.0e-107 392.9 450 58.7
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 4.0e-107 392.5 457 55.1
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 8.9e-107 391.3 453 54.7
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.5e-106 390.6 389 64.0
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 9.8e-106 387.9 444 60.8
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 1.3e-105 387.5 452 57.7
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 1.3e-105 387.5 430 56.7
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 1.3e-105 387.5 451 55.0
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 8.3e-105 384.8 454 59.3
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.8e-104 383.6 449 54.8
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 2.4e-104 383.3 494 50.4
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 3.2e-104 382.9 426 56.6
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 3.2e-104 382.9 434 57.8
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 3.2e-104 382.9 435 55.9
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 4.1e-104 382.5 448 54.7
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 4.1e-104 382.5 460 59.8
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 1.6e-103 380.6 447 54.8
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 2.9e-102 376.3 501 54.3
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 6.6e-102 375.2 428 57.0
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.5e-101 374.0 463 57.0
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 7.3e-101 371.7 454 52.9
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.6e-100 370.5 526 48.7
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 1.2e-98 364.4 426 53.3
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 1.2e-98 364.4 440 53.4
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 3.4e-98 362.8 490 54.5
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 4.4e-98 362.5 432 55.3
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 2.2e-97 360.1 451 52.3
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 2.9e-97 359.8 485 49.9
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 2.9e-97 359.8 442 53.2
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 4.1e-96 355.9 437 54.7
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 1.2e-95 354.4 433 54.3
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.7e-94 350.5 447 54.4
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 5.0e-94 349.0 445 55.1
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 1.1e-93 347.8 459 51.4
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 5.6e-93 345.5 447 51.5
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 9.5e-93 344.7 459 51.0
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 9.5e-93 344.7 430 54.4
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 2.1e-92 343.6 483 49.3
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 2.1e-92 343.6 458 50.9
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 2.8e-92 343.2 484 48.8
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 3.6e-92 342.8 471 48.6
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 6.2e-92 342.0 423 53.2
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 1.4e-91 340.9 468 55.6
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 1.4e-91 340.9 468 51.3
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 1.8e-91 340.5 483 49.3
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 1.8e-91 340.5 466 54.7
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 4.0e-91 339.3 423 55.3
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 5.2e-91 339.0 497 47.9
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 5.8e-90 335.5 475 50.5
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.3e-89 334.3 470 50.6
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.7e-89 332.8 450 52.0
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 6.4e-89 332.0 464 53.4
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 8.3e-89 331.6 451 53.0
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 7.1e-88 328.6 456 49.3
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.6e-87 327.4 430 52.3
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 2.7e-87 326.6 456 49.6
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 6.0e-87 325.5 442 50.2
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 7.8e-87 325.1 453 49.0
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 3.0e-86 323.2 434 52.8
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 3.9e-86 322.8 472 51.1
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 5.1e-86 322.4 453 49.4
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 6.6e-86 322.0 446 50.7
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 8.6e-86 321.6 466 51.7
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.1e-85 321.2 455 51.0
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 4.3e-85 319.3 457 49.9
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 4.3e-85 319.3 452 54.0
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 8.1e-84 315.1 437 52.6
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 1.1e-83 314.7 458 49.6
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 1.4e-83 314.3 442 51.6
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.3e-83 313.5 418 51.7
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 3.4e-82 309.7 452 48.0
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 3.4e-82 309.7 458 48.5
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 3.4e-82 309.7 455 46.6
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 7.6e-82 308.5 488 49.8
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 9.9e-82 308.1 468 47.2
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 1.3e-81 307.8 449 55.5
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 2.9e-81 306.6 238 70.2
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 6.4e-81 305.4 487 45.0
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 6.4e-81 305.4 459 51.6
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 6.4e-81 305.4 452 46.0
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.4e-80 304.3 472 47.9
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 1.9e-80 303.9 435 48.0
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 4.1e-80 302.8 463 46.0
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 7.1e-80 302.0 417 49.2
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 2.1e-79 300.4 475 46.1
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 2.1e-79 300.4 442 52.7
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 2.3e-78 297.0 460 45.7
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 2.3e-78 297.0 426 46.5
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 5.1e-78 295.8 466 45.3
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 9.6e-77 291.6 452 46.9
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 2.4e-75 287.0 243 66.7
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 2.6e-74 283.5 439 46.5
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 2.2e-73 280.4 437 48.1
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 2.9e-73 280.0 453 43.3
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 3.8e-73 279.6 464 43.3
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 6.4e-73 278.9 449 50.6
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 1.9e-72 277.3 467 47.3
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 5.4e-72 275.8 444 45.0
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 5.4e-72 275.8 448 46.2
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 5.4e-72 275.8 444 45.0
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 5.4e-72 275.8 444 45.0
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 1.2e-71 274.6 448 46.0
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 1.2e-71 274.6 365 49.9
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 6.0e-71 272.3 431 45.9
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 6.0e-71 272.3 485 47.6
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 7.8e-71 271.9 452 47.6
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 1.0e-70 271.6 493 42.8
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 3.3e-69 266.5 441 43.5
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 9.6e-69 265.0 430 46.3
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 6.2e-68 262.3 429 45.2
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 3.1e-67 260.0 467 46.3
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 3.1e-67 260.0 453 43.3
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 5.3e-67 259.2 438 46.3
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 1.5e-66 257.7 438 45.9
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 2.0e-66 257.3 408 48.5
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 1.4e-59 234.6 420 44.8
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 1.4e-59 234.6 420 44.8
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 4.0e-59 233.0 420 44.5
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 9.9e-58 228.4 447 41.4
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 8.4e-57 225.3 457 41.1
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 1.8e-54 217.6 476 37.6
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.4e-50 203.4 337 46.6
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 1.3e-49 201.4 465 37.2
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 2.2e-49 200.7 434 42.6
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 2.2e-49 200.7 416 43.0
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 1.2e-39 168.3 158 61.4
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 1.6e-39 167.9 319 43.9
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.8e-36 157.1 416 35.1
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 1.8e-35 154.5 461 34.7
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 1.3e-33 148.3 342 38.0
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 2.2e-33 147.5 448 35.7
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 2.9e-33 147.1 83 84.3
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 5.1e-30 136.3 169 50.9
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 4.1e-27 126.7 103 67.0
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 5.3e-19 99.8 108 59.3
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 1.2e-18 98.6 89 61.8
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 1.8e-14 84.7 102 50.0
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 4.0e-14 83.6 134 43.3
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 2.6e-13 80.9 404 29.0
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 2.6e-13 80.9 67 59.7
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 1.3e-12 78.6 89 55.1
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 2.8e-12 77.4 484 27.7
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 1.1e-11 75.5 127 41.7
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 1.1e-11 75.5 143 39.9
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 1.1e-11 75.5 127 41.7
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 1.1e-11 75.5 143 39.9
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 1.0e-09 68.9 179 32.4
MBI04_g43354_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.8e-09 67.0 68 63.2
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 5.0e-09 66.6 127 39.4
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.9e-08 64.7 62 56.5
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 1.8e-06 58.2 309 27.2


User provided reference genes

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