Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 3.3e-311 1070.8 542 100.0
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 6.2e-241 837.4 537 80.1
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 2.6e-231 805.4 464 86.6
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 3.7e-230 801.6 539 77.0
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 7.1e-229 797.3 530 79.4
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 7.1e-229 797.3 468 85.5
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.5e-226 788.9 463 84.9
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 4.3e-226 788.1 532 77.3
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 3.6e-225 785.0 486 83.3
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 1.7e-222 776.2 480 82.1
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 2.9e-222 775.4 471 82.2
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 4.9e-222 774.6 471 82.4
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 5.4e-221 771.2 507 77.1
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 7.1e-221 770.8 472 81.1
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 2.7e-220 768.8 473 82.0
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 5.1e-219 764.6 525 74.9
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 7.3e-218 760.8 531 72.3
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 3.6e-217 758.4 480 79.6
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 6.2e-217 757.7 468 79.7
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 8.1e-217 757.3 497 77.5
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 1.2e-215 753.4 480 79.4
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 1.2e-215 753.4 463 79.7
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 9.9e-215 750.4 482 77.4
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 1.7e-214 749.6 468 78.2
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 3.8e-214 748.4 498 74.7
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 4.9e-214 748.0 496 77.0
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 6.4e-214 747.7 483 78.7
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 6.4e-214 747.7 465 79.6
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 6.4e-214 747.7 480 79.0
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 1.1e-213 746.9 524 74.2
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 2.4e-213 745.7 482 77.2
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 4.2e-213 745.0 522 73.4
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 5.4e-213 744.6 466 80.0
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 1.2e-212 743.4 468 78.4
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 1.2e-212 743.4 469 79.5
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 1.2e-212 743.4 526 73.8
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 1.6e-212 743.0 528 73.9
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 2.7e-212 742.3 526 74.3
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 6.0e-212 741.1 463 78.6
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 1.0e-211 740.3 512 73.0
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 1.7e-211 739.6 510 74.9
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 3.9e-211 738.4 491 75.8
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 6.6e-211 737.6 498 73.5
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 1.1e-210 736.9 515 74.4
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.5e-210 736.5 512 73.0
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 3.3e-210 735.3 461 80.0
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 3.3e-210 735.3 463 80.1
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 3.3e-210 735.3 528 71.8
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 4.3e-210 734.9 463 79.0
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 5.6e-210 734.6 527 72.1
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 1.6e-209 733.0 509 72.1
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 1.6e-209 733.0 487 76.4
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 2.1e-209 732.6 527 71.2
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 2.8e-209 732.3 468 79.1
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 3.6e-209 731.9 472 76.3
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 6.2e-209 731.1 461 78.3
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 3.1e-208 728.8 474 77.0
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 4.0e-208 728.4 498 73.9
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 6.9e-208 727.6 514 72.8
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 9.0e-208 727.2 473 77.0
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 1.7e-206 723.0 510 72.0
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 2.2e-206 722.6 470 77.2
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 1.9e-205 719.5 510 72.0
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 2.4e-205 719.2 463 77.1
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 1.3e-203 713.4 474 74.7
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 3.9e-203 711.8 473 76.1
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 3.9e-203 711.8 473 76.1
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 6.7e-203 711.1 466 77.7
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 4.3e-202 708.4 474 75.7
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 4.3e-202 708.4 465 75.5
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 9.0e-200 700.7 471 75.2
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 3.4e-199 698.7 470 74.9
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 3.4e-199 698.7 474 73.8
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 4.2e-197 691.8 463 75.4
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 9.3e-197 690.6 463 75.8
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 2.3e-195 686.0 463 75.4
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 2.3e-195 686.0 463 75.2
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.9e-194 682.9 445 77.1
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 1.9e-194 682.9 472 73.9
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 3.3e-194 682.2 463 74.9
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 1.3e-193 680.2 463 73.0
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 1.3e-193 680.2 463 74.7
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 2.1e-193 679.5 463 74.7
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 2.8e-193 679.1 463 74.5
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 4.8e-193 678.3 463 74.3
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 1.1e-192 677.2 466 74.2
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 2.4e-192 676.0 463 74.3
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 6.9e-192 674.5 461 73.5
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 1.3e-190 670.2 530 67.9
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 1.7e-190 669.8 489 70.8
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 2.9e-190 669.1 463 73.9
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 2.5e-189 666.0 465 72.3
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 7.2e-189 664.5 582 63.6
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 1.8e-184 649.8 410 78.5
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 8.5e-182 641.0 463 69.1
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 1.5e-175 620.2 482 66.6
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 2.9e-174 615.9 488 65.6
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 2.7e-172 609.4 609 56.3
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 1.8e-163 580.1 455 63.7
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 5.2e-163 578.6 438 69.4
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 9.7e-162 574.3 357 78.2
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 2.7e-156 556.2 500 59.6
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.0e-155 554.3 347 82.1
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 1.8e-152 543.5 466 59.9
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.4e-144 517.3 360 76.7
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 1.0e-139 501.1 463 57.5
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 3.1e-123 446.4 378 60.6
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 8.1e-108 395.2 530 44.7
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 1.4e-99 367.9 229 77.3
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 1.1e-91 341.7 250 71.2
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.4e-80 304.7 370 48.9
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 1.4e-80 304.7 280 58.6
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.5e-79 300.1 456 44.1
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 6.3e-76 289.3 189 74.1
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 1.1e-59 235.3 143 80.4
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.2e-58 231.9 138 79.7
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 1.2e-58 231.9 158 74.1
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 6.1e-55 219.5 244 48.0
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 5.2e-54 216.5 133 84.2
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.0e-53 214.5 156 71.2
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 1.2e-50 205.3 129 82.2
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 1.9e-48 198.0 128 74.2
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 9.7e-45 185.7 99 97.0
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 9.7e-45 185.7 99 97.0
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.3e-41 175.3 295 41.4
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 9.8e-37 159.1 133 66.2
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 8.3e-36 156.0 119 67.2
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 1.6e-34 151.8 97 76.3
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 1.3e-33 148.7 92 73.9
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 6.3e-28 129.8 182 40.7
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 1.6e-26 125.2 145 51.7
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 7.3e-24 116.3 121 52.1
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.3e-22 111.3 78 75.6
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 2.5e-16 91.3 62 69.4
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 7.3e-16 89.7 50 90.0
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 1.2e-15 89.0 138 39.1
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 1.4e-14 85.5 201 30.8
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 1.8e-14 85.1 50 82.0
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 4.6e-10 70.5 62 58.1
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 8.1e-07 59.7 72 47.2
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 8.1e-07 59.7 182 28.0


User provided reference genes

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