Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 4.0e-311 1070.8 647 100.0
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 9.1e-207 724.2 614 79.5
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 2.8e-147 526.6 647 54.4
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.9e-141 506.1 646 55.4
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 6.6e-133 478.8 626 55.0
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 9.9e-129 464.9 648 48.9
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 1.1e-127 461.5 647 51.5
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 3.0e-125 453.4 646 54.0
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 3.0e-125 453.4 567 55.7
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 3.9e-117 426.4 647 42.3
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 2.0e-113 414.1 597 45.4
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 3.4e-113 413.3 647 48.4
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 6.5e-112 409.1 647 47.4
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 8.4e-112 408.7 620 45.2
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 9.3e-111 405.2 649 40.8
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 2.3e-109 400.6 640 40.5
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 1.1e-108 398.3 646 48.5
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 9.7e-108 395.2 602 49.8
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 2.8e-107 393.7 647 51.0
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 4.8e-107 392.9 631 50.4
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 1.8e-106 391.0 648 47.4
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 4.1e-106 389.8 647 42.7
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 1.5e-105 387.9 650 46.3
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 2.2e-104 384.0 567 44.4
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 3.8e-104 383.3 643 46.7
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 1.4e-101 374.8 631 51.7
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 2.3e-101 374.0 638 43.1
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 1.5e-100 371.3 648 44.9
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 4.3e-100 369.8 653 45.9
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 7.4e-100 369.0 649 42.5
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 4.8e-99 366.3 649 42.2
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 4.5e-97 359.8 658 44.1
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 2.2e-96 357.5 647 39.9
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 3.8e-96 356.7 649 41.3
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 1.4e-93 348.2 591 46.0
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 7.4e-92 342.4 638 40.0
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 3.7e-91 340.1 649 44.7
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 6.3e-91 339.3 536 45.3
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 7.0e-90 335.9 647 46.1
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.5e-89 334.7 643 38.3
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 2.0e-89 334.3 648 48.3
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 2.6e-89 334.0 614 46.3
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 3.5e-89 333.6 648 48.3
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 2.2e-88 330.9 648 42.1
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 5.0e-88 329.7 530 41.5
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 5.0e-88 329.7 631 45.3
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 6.5e-88 329.3 628 42.5
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 1.5e-87 328.2 648 44.8
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 1.5e-87 328.2 647 41.1
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 9.4e-87 325.5 648 42.0
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 9.4e-87 325.5 648 48.0
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 1.6e-86 324.7 617 36.5
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 6.1e-86 322.8 521 48.8
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 2.0e-84 317.8 647 46.4
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 7.4e-84 315.8 560 38.6
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 2.8e-83 313.9 617 48.1
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 4.8e-83 313.2 647 46.8
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 6.3e-83 312.8 552 41.7
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 8.2e-83 312.4 668 39.4
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 4.1e-82 310.1 521 45.5
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.6e-81 308.1 597 40.0
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 4.5e-81 306.6 591 43.0
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 7.7e-81 305.8 539 38.0
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 8.5e-80 302.4 536 43.8
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 1.5e-79 301.6 647 45.7
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 4.2e-79 300.1 646 40.1
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 7.2e-79 299.3 551 43.9
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 1.2e-78 298.5 533 45.4
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 3.6e-78 297.0 560 44.1
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 4.7e-78 296.6 633 44.5
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 2.3e-77 294.3 616 39.3
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 5.2e-77 293.1 652 39.3
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 5.2e-77 293.1 530 38.9
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 6.8e-77 292.7 491 46.4
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 1.2e-76 292.0 633 40.8
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 1.8e-74 284.6 586 35.0
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 2.7e-73 280.8 609 39.2
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 7.7e-73 279.3 536 35.8
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 1.3e-72 278.5 643 44.6
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 1.7e-72 278.1 600 39.7
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 4.2e-71 273.5 615 40.8
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 4.2e-71 273.5 552 35.7
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 4.7e-70 270.0 544 39.7
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 2.3e-69 267.7 246 59.3
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 8.8e-69 265.8 601 39.1
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 1.5e-68 265.0 601 39.6
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 2.8e-67 260.8 635 40.2
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 6.3e-67 259.6 600 38.8
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 6.3e-67 259.6 410 40.5
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 1.1e-66 258.8 640 38.3
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.6e-65 255.0 646 37.0
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 1.7e-64 251.5 595 38.3
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 1.7e-64 251.5 600 38.2
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 6.6e-64 249.6 594 39.1
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 2.5e-63 247.7 499 43.9
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 9.5e-63 245.7 608 38.7
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 1.2e-62 245.4 530 40.2
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 1.6e-62 245.0 530 40.2
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 3.6e-62 243.8 594 38.6
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 9.8e-60 235.7 519 38.9
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 1.1e-58 232.3 593 37.6
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 4.1e-58 230.3 353 41.6
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 1.6e-54 218.4 393 36.6
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 1.3e-51 208.8 197 55.8
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 6.2e-46 189.9 256 44.5
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 4.9e-43 180.3 211 59.2
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 1.1e-42 179.1 469 39.0
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 5.6e-39 166.8 397 29.7
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 2.9e-35 154.5 268 38.8
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 1.1e-34 152.5 396 28.8
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 4.6e-33 147.1 520 25.2
Lj1A1021T50 Lonicera japonica HOM05D005626 ORTHO05D007372 1.9e-31 141.7 155 49.0
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 2.5e-31 141.4 85 87.1
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 5.6e-31 140.2 111 62.2
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.1e-30 138.3 404 26.7
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 4.7e-30 137.1 157 49.0
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.2e-25 122.5 95 63.2
SEGI_36936 Sequoiadendron giganteum HOM05D005626 ORTHO05D007372 1.1e-21 109.4 125 44.0
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 2.3e-16 91.7 135 38.5
Actinidia06140 Actinidia chinensis HOM05D005626 ORTHO05D007372 1.9e-15 88.6 60 73.3
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 5.6e-15 87.0 108 45.4
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 7.3e-15 86.7 159 34.6
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 7.3e-15 86.7 120 41.7
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 1.5e-12 79.0 91 47.3
QL09p008114 Quercus lobata HOM05D005626 ORTHO05D007372 4.5e-12 77.4 52 71.2
QL09p008133 Quercus lobata HOM05D005626 ORTHO05D007372 5.8e-12 77.0 46 82.6
FAN10G4199 Fragaria x ananassa HOM05D005626 ORTHO05D007372 3.8e-11 74.3 101 70.3
MD07G1293500 Malus domestica HOM05D005626 ORTHO05D007372 3.8e-11 74.3 56 66.1
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 6.4e-11 73.6 134 30.6
Cfa019813 Carpinus fangiana HOM05D005626 ORTHO05D007372 7.4e-07 60.1 44 65.9
CBR_g37721 Chara braunii HOM05D005626 ORTHO05D007372 7.4e-07 60.1 139 27.3
QL08p045803 Quercus lobata HOM05D000928 ORTHO05D001186 8.1e-06 56.6 354 20.3


User provided reference genes

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