Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 0.0e+00 1416.4 750 100.0
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 0.0e+00 1157.5 716 87.2
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 0.0e+00 1140.2 720 83.6
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 0.0e+00 1114.0 808 76.4
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 0.0e+00 1109.7 720 82.4
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 0.0e+00 1103.2 717 82.0
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 0.0e+00 1099.0 730 80.1
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 0.0e+00 1098.6 684 85.1
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 0.0e+00 1097.8 668 84.9
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 0.0e+00 1097.4 721 80.0
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 0.0e+00 1097.4 720 80.8
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 0.0e+00 1089.7 773 76.3
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 0.0e+00 1085.5 737 80.6
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 0.0e+00 1085.5 720 80.6
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 0.0e+00 1084.7 720 79.4
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 0.0e+00 1083.6 718 80.9
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 0.0e+00 1083.2 719 80.5
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 1.0e-311 1073.2 719 81.4
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 1.0e-311 1072.8 716 79.3
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 3.6e-311 1071.2 688 82.0
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 5.6e-309 1063.9 721 80.3
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 2.4e-307 1058.5 721 79.5
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 1.2e-306 1056.2 716 78.4
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 3.4e-306 1054.7 713 78.3
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 7.6e-306 1053.5 717 76.8
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 2.9e-305 1051.6 717 78.1
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 5.4e-304 1047.3 720 79.2
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 1.2e-303 1046.2 716 78.5
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 8.7e-302 1040.0 787 72.2
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 1.9e-301 1038.9 723 77.3
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 5.6e-301 1037.3 713 78.0
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 7.3e-301 1036.9 720 78.1
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 1.3e-300 1036.2 720 76.7
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 6.2e-300 1033.9 711 77.9
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 1.1e-299 1033.1 732 76.6
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 1.1e-299 1033.1 723 78.7
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 2.4e-299 1031.9 719 77.3
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 3.1e-299 1031.6 717 78.1
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 6.9e-299 1030.4 718 77.6
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 9.0e-299 1030.0 717 77.8
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 2.0e-298 1028.9 717 77.1
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 3.4e-298 1028.1 712 77.7
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 1.7e-297 1025.8 815 71.9
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.1e-295 1018.8 718 74.9
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 4.6e-295 1017.7 666 80.6
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 4.6e-295 1017.7 698 76.4
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 1.7e-294 1015.8 715 74.7
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 1.7e-294 1015.8 718 76.7
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 2.3e-294 1015.4 738 73.7
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 8.1e-292 1006.9 720 77.1
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 9.0e-291 1003.4 672 81.5
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 2.6e-290 1001.9 717 76.4
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 1.7e-289 999.2 695 75.8
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 2.2e-289 998.8 770 70.8
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 6.4e-289 997.3 718 75.8
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 8.4e-289 996.9 725 74.1
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 1.4e-288 996.1 718 75.8
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 9.3e-288 993.4 636 80.8
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 1.6e-287 992.6 725 74.1
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 2.3e-286 988.8 750 72.8
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 3.0e-286 988.4 650 78.6
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 5.6e-285 984.2 650 78.5
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 1.3e-284 983.0 717 73.8
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 1.6e-284 982.6 610 81.8
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 1.6e-284 982.6 703 77.1
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 1.6e-284 982.6 580 84.3
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 2.8e-284 981.9 721 73.0
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 2.8e-284 981.9 620 80.3
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 6.2e-284 980.7 704 76.4
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 6.2e-284 980.7 622 82.8
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.2e-282 976.5 727 71.9
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.0e-282 975.7 719 74.3
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 1.4e-280 969.5 645 77.7
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 2.7e-279 965.3 647 77.1
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 7.9e-279 963.8 688 74.3
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 6.7e-278 960.7 700 74.9
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 6.7e-278 960.7 676 74.7
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 3.3e-277 958.4 653 76.3
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 1.6e-276 956.1 653 76.1
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.5e-274 949.5 698 72.6
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 5.5e-272 941.0 654 74.9
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 9.3e-272 940.3 656 74.7
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 2.3e-270 935.6 721 73.2
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 5.1e-270 934.5 663 73.5
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 1.9e-269 932.6 504 89.7
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 7.4e-269 930.6 505 88.5
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 3.7e-268 928.3 720 67.6
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 3.6e-263 911.8 699 69.7
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 2.6e-258 895.6 687 69.4
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.9e-256 889.4 731 69.9
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 5.2e-254 881.3 717 69.6
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 3.1e-251 872.1 803 62.1
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 1.8e-246 856.3 472 86.2
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.1e-243 847.0 532 83.3
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 3.1e-235 818.9 686 65.3
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.5e-232 809.3 734 64.4
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 2.9e-225 785.8 706 60.5
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 9.8e-221 770.8 568 65.8
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 9.5e-216 754.2 698 58.7
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 3.7e-204 715.7 496 68.1
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 7.3e-200 701.4 402 83.3
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.7e-196 690.3 683 61.2
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 3.4e-189 666.0 337 92.6
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 1.6e-178 630.6 544 56.6
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.0e-177 627.9 543 69.4
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 3.3e-176 622.9 467 63.4
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.4e-174 617.5 517 68.9
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.1e-171 607.8 470 61.9
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.1e-166 591.3 360 79.2
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 1.2e-130 471.5 541 47.3
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 2.7e-130 470.3 495 55.2
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 1.2e-122 444.9 570 43.7
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 2.1e-122 444.1 406 67.5
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.5e-120 438.0 255 78.8
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 3.7e-111 406.8 526 44.5
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 2.4e-102 377.5 547 39.5
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 4.1e-102 376.7 214 85.0
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 3.9e-92 343.6 179 90.5
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 2.3e-89 334.3 263 66.5
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.3e-76 292.0 356 59.6
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 1.5e-72 278.5 156 80.8
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.9e-59 235.0 281 53.7
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.5e-59 234.6 172 66.9
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.5e-54 218.0 236 60.2
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 9.3e-54 216.1 235 60.0
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.5e-43 182.2 98 86.7
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 1.4e-36 159.1 220 61.4
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 7.4e-35 153.3 257 47.1
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 4.5e-32 144.1 96 78.1
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.2e-24 119.4 76 81.6
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 7.2e-22 110.2 123 53.7
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 7.0e-17 93.6 168 42.9
Sopen00g013530 Solanum pennellii HOM05D005363 ORTHO05D006607 1.6e-16 92.4 105 62.9
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.2e-15 88.6 276 34.4
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.9e-15 88.2 168 41.1
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.4e-12 79.3 197 48.7
GSVIVG01001483001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.4e-12 79.3 90 53.3
arahy.Tifrunner.gnm1.ann1.9SD0MH Arachis hypogaea HOM05D005363 ORTHO05D015967 1.0e-07 63.2 50 62.0
Lsat_1_v5_gn_8_136800 Lactuca sativa HOM05D015967 ORTHO05D230256 5.0e-07 60.8 68 57.4


User provided reference genes

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