Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 2198.7 1093 100.0
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 2022.7 1146 90.5
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1677.1 988 87.6
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1571.6 1019 81.1
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 0.0e+00 1442.6 1015 73.9
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 1343.2 1014 68.5
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1342.4 1020 70.2
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 0.0e+00 1342.0 1025 68.9
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 0.0e+00 1332.8 1033 67.3
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 0.0e+00 1328.9 1015 68.8
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 0.0e+00 1316.2 1019 69.0
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 0.0e+00 1301.2 1017 67.6
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 0.0e+00 1294.6 1018 66.8
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 0.0e+00 1292.7 1013 66.5
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1290.4 1010 66.6
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 0.0e+00 1287.7 1022 66.3
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 0.0e+00 1281.9 1014 65.2
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1278.5 1014 65.6
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1278.1 1015 66.5
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 0.0e+00 1270.8 1040 64.0
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1267.3 1014 65.4
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1267.3 1040 63.9
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 0.0e+00 1267.3 1016 66.3
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 0.0e+00 1263.8 1016 65.4
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 0.0e+00 1251.9 1061 64.7
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1248.4 1018 65.1
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 0.0e+00 1243.4 1020 65.1
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1237.2 1014 65.7
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1233.4 1021 63.9
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 0.0e+00 1226.8 1015 63.8
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1224.9 948 67.5
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 0.0e+00 1223.0 1009 63.5
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1216.1 1024 63.9
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1215.3 1008 65.0
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1213.0 984 65.4
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 0.0e+00 1213.0 998 63.6
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 0.0e+00 1209.9 1056 61.6
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 0.0e+00 1209.9 1065 60.8
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 0.0e+00 1209.5 1014 63.5
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1206.4 1016 63.6
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 0.0e+00 1204.5 1034 62.3
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 0.0e+00 1203.0 925 67.6
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 0.0e+00 1202.6 1013 63.1
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 0.0e+00 1202.2 1058 60.9
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 0.0e+00 1196.8 1012 62.7
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 0.0e+00 1196.4 1010 64.0
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1195.6 1061 61.2
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 0.0e+00 1193.3 1030 61.5
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1192.9 1056 61.3
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1192.2 1000 62.8
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1191.0 1056 61.0
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1188.7 1000 62.8
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1186.4 1010 62.8
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 0.0e+00 1185.6 1058 60.4
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 0.0e+00 1183.7 1061 60.9
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1181.4 1033 62.4
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 0.0e+00 1181.0 1140 56.8
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 0.0e+00 1179.5 1010 62.9
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1179.1 1006 63.4
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 0.0e+00 1176.8 1027 61.9
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 0.0e+00 1174.1 1044 60.2
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 0.0e+00 1173.7 1056 60.1
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 0.0e+00 1173.3 1015 61.5
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 0.0e+00 1171.4 1052 59.3
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 0.0e+00 1171.0 1018 61.6
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 0.0e+00 1171.0 1018 61.1
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 0.0e+00 1170.6 973 63.4
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1169.5 1066 59.9
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1167.9 1069 59.8
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 0.0e+00 1160.2 747 78.2
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1158.7 1063 60.2
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 0.0e+00 1155.6 1075 58.1
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 0.0e+00 1152.9 789 73.3
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 0.0e+00 1151.7 1018 60.8
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1140.2 997 61.6
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 0.0e+00 1135.6 1103 56.6
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 0.0e+00 1128.2 1014 61.3
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1125.2 1018 59.5
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 0.0e+00 1121.7 1021 60.4
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1119.4 1018 58.9
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 0.0e+00 1107.4 834 67.7
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 0.0e+00 1104.0 788 71.1
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 0.0e+00 1095.5 788 70.6
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 0.0e+00 1092.0 788 69.8
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1085.1 1006 60.0
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 1.5e-311 1073.2 1012 56.3
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.6e-309 1066.2 747 71.1
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 1.8e-308 1062.8 1095 55.1
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 2.4e-308 1062.4 776 69.3
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 9.3e-305 1050.4 993 57.7
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 6.7e-303 1044.3 739 72.7
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 1.5e-299 1033.1 792 66.2
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 1.4e-297 1026.5 790 66.8
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 8.2e-293 1010.7 982 56.7
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 4.5e-291 1005.0 1018 55.7
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 5.0e-266 921.8 995 51.4
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 1.3e-258 897.1 938 52.0
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 5.6e-257 891.7 1048 50.4
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 5.2e-255 885.2 791 59.4
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 3.3e-241 839.3 622 70.1
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 3.4e-214 749.6 753 55.0
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 3.2e-212 743.0 548 68.6
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 7.9e-203 711.8 1038 41.7
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 3.9e-194 682.9 907 43.1
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 1.7e-181 641.0 899 41.6
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 4.1e-159 566.6 453 66.2
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 3.2e-156 557.0 885 38.4
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 1.1e-148 531.9 421 67.5
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 2.4e-119 434.5 360 63.1
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 3.9e-117 427.2 389 56.0
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 3.5e-110 404.1 302 68.9
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.1e-108 399.1 422 56.4
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 3.5e-102 377.5 1006 30.6
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 7.4e-92 343.2 212 84.4
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 1.2e-86 325.9 234 71.4
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 1.8e-85 322.0 228 68.4
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.8e-77 295.4 231 71.4
GSVIVG01016718001 Vitis vinifera HOM05D001849 ORTHO05D004689 3.3e-68 264.6 204 69.6
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.0e-64 253.1 174 78.7
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 3.9e-61 241.1 120 89.2
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 7.4e-60 236.9 181 73.5
Lalb_Chr10g0101331 Lupinus albus HOM05D001849 ORTHO05D004689 3.7e-51 208.0 203 58.1
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 1.6e-49 202.6 223 51.1
CSS0033867 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.6e-49 201.8 192 61.5
TAR730G0002 Trochodendron aralioides HOM05D001849 ORTHO05D004689 7.7e-49 200.3 154 68.8
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 8.8e-45 186.8 93 94.6
Cc04_g01050 Coffea canephora HOM05D001849 ORTHO05D004689 1.5e-44 186.0 203 59.1
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.3e-44 184.9 93 93.5
Duzib235G0009 Durio zibethinus HOM05D001849 ORTHO05D004689 3.8e-40 171.4 170 57.6
Hund18673 Selenicereus undatus HOM05D001849 ORTHO05D004689 3.7e-35 154.8 174 56.3
CAN.G1243.8 Capsicum annuum HOM05D001849 ORTHO05D004689 1.8e-34 152.5 146 60.3
Cpa.g.sc169.33 Carica papaya HOM05D001849 ORTHO05D004689 5.9e-33 147.5 174 50.6
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.9e-31 142.5 93 76.3
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.9e-31 142.5 93 69.9
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 4.7e-30 137.9 180 45.0
CDE07G1706 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 2.0e-28 132.5 201 44.8
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 7.0e-26 124.0 104 61.5
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 5.0e-24 117.9 95 68.4
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 1.6e-22 112.8 90 62.2
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 8.0e-22 110.5 89 60.7
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 2.0e-20 105.9 73 71.2
Hma1.2p1_0225F.1_g094790 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 2.2e-19 102.4 143 47.6
Atru.chr12.2396 Acer truncatum HOM05D001849 ORTHO05D004689 3.7e-19 101.7 143 49.7
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 3.5e-17 95.1 189 37.6
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 3.9e-16 91.7 87 54.0
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 4.7e-14 84.7 196 33.2
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 4.0e-13 81.6 547 22.5
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 9.8e-12 77.0 49 73.5
Hma1.2p1_0436F.1_g152830 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 9.8e-12 77.0 64 60.9
Cre10.g425675 Chlamydomonas reinhardtii HOM05D001849 ORTHO05D004689 2.4e-10 72.4 201 26.9
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 4.1e-10 71.6 99 41.4
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.3e-08 66.6 78 47.4
Atru.chr12.2376 Acer truncatum HOM05D001849 ORTHO05D004689 1.7e-08 66.2 100 48.0
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 3.0e-08 65.5 70 52.9
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 5.6e-07 61.2 69 52.2
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 9.5e-07 60.5 43 65.1


User provided reference genes

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