Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1342.8 644 100.0
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1242.3 648 91.7
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1238.0 647 92.4
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1232.2 644 91.5
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1223.8 648 90.6
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1222.2 648 89.8
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1212.2 646 88.9
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1212.2 646 89.0
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1212.2 647 88.6
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1211.1 647 88.4
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1208.0 649 89.4
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1206.8 645 89.0
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1204.9 647 89.0
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1204.5 645 88.5
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1200.3 648 88.7
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1200.3 645 88.8
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1199.5 647 88.7
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1199.5 644 88.5
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1199.5 644 88.4
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1199.5 644 88.4
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1198.3 646 88.5
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1198.3 648 88.1
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1198.3 645 88.5
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1198.0 645 88.2
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1197.6 642 88.9
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1197.6 645 87.8
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1197.2 648 88.0
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1196.4 648 87.7
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1195.3 649 88.1
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1195.3 646 88.4
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1193.7 648 87.5
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1192.9 646 88.2
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1192.9 648 87.8
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1192.9 716 81.3
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1192.6 648 87.8
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1191.4 648 87.2
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1191.0 646 87.6
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1191.0 649 87.8
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1190.6 647 87.2
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1190.6 647 87.2
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1190.3 647 87.3
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1189.9 648 87.2
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1189.9 645 87.8
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1189.9 645 87.8
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1188.3 649 87.5
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1188.3 644 88.5
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1188.3 647 86.9
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1187.6 646 87.6
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1187.2 648 88.6
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1187.2 645 87.4
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1186.8 645 87.6
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1186.0 645 87.4
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1185.2 648 87.5
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1185.2 642 88.2
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1184.1 650 86.9
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1182.5 648 87.0
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1182.2 645 87.1
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1182.2 645 87.4
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1182.2 649 87.5
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1180.6 646 87.0
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1180.2 646 88.1
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1179.5 649 86.3
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1179.5 639 88.7
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1179.1 642 87.2
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1178.7 646 86.5
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1177.9 645 86.8
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1176.8 645 86.8
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1176.8 645 86.7
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1175.2 642 86.9
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1175.2 645 87.8
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1173.3 649 86.3
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1172.9 645 87.6
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1171.8 648 86.7
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1171.4 641 85.6
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1168.7 647 87.0
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1168.7 643 87.1
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1168.3 646 86.5
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1167.5 649 86.1
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1166.8 647 86.7
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1166.0 649 86.4
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1164.4 652 86.0
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1164.1 644 87.9
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1162.1 644 87.6
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1161.4 646 85.9
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1159.4 650 85.7
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1155.2 647 85.8
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1155.2 647 85.8
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1154.8 647 85.9
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1153.3 647 85.8
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1153.3 647 85.2
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1152.1 645 86.4
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1150.6 648 84.6
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1147.9 647 85.2
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1144.8 631 86.5
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1141.7 645 84.7
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1138.6 645 85.1
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1134.4 593 91.7
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1130.5 646 83.4
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 0.0e+00 1122.1 651 83.1
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1116.7 641 82.5
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1116.3 584 89.7
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1107.0 642 81.8
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1106.7 642 83.8
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 0.0e+00 1077.8 672 77.7
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 9.7e-310 1066.2 645 80.3
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 4.7e-304 1047.3 569 85.9
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 9.7e-302 1039.6 584 83.9
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 3.1e-300 1034.6 585 82.9
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 1.7e-298 1028.9 569 84.5
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 1.7e-298 1028.9 540 88.5
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 2.2e-290 1001.9 563 82.9
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 3.8e-290 1001.1 612 80.1
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 3.0e-287 991.5 554 83.0
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 3.9e-250 868.2 475 86.1
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 7.9e-227 790.8 513 73.1
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 4.2e-204 715.3 393 87.0
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 6.7e-202 708.0 421 82.4
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 7.0e-191 671.4 581 58.7
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 7.3e-148 528.5 267 92.9
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.6e-126 457.6 551 47.9
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 1.1e-74 285.4 226 62.8
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 5.2e-69 266.5 125 96.0
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 1.4e-45 188.7 101 87.1
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 2.3e-45 188.0 151 63.6
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 4.1e-42 177.2 93 90.3
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 1.9e-39 168.3 150 61.3
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.4e-21 109.0 53 94.3
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.5e-20 105.5 53 92.5
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 1.1e-07 62.8 32 87.5


User provided reference genes

Program Settings