Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.3e-203 711.1 351 100.0
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 8.8e-164 580.5 337 83.7
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 5.7e-163 577.8 337 84.9
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 2.8e-162 575.5 337 84.6
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 3.8e-159 565.1 353 79.3
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 5.9e-152 541.2 337 77.2
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 2.9e-151 538.9 337 76.9
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 4.7e-149 531.6 337 78.0
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 6.1e-149 531.2 335 77.6
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 2.0e-147 526.2 337 76.3
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 1.7e-146 523.1 337 76.3
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 4.8e-146 521.5 337 73.9
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 1.1e-145 520.4 338 76.0
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 1.2e-144 516.9 337 74.8
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 1.7e-143 513.1 337 73.9
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 2.9e-143 512.3 337 75.1
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 3.8e-143 511.9 335 74.3
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 5.0e-143 511.5 337 75.1
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 6.6e-143 511.1 337 74.8
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 1.1e-142 510.4 337 73.3
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 4.2e-142 508.4 337 73.6
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 2.8e-141 505.8 347 73.2
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 4.7e-141 505.0 338 73.4
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 6.1e-141 504.6 337 73.0
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 1.4e-140 503.4 337 73.0
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 1.4e-140 503.4 341 72.7
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.8e-140 503.1 339 73.2
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 4.0e-140 501.9 337 73.0
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 5.2e-140 501.5 337 73.0
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 8.9e-140 500.7 337 71.8
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 2.6e-139 499.2 339 72.3
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 3.4e-139 498.8 337 72.4
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 4.4e-139 498.4 337 72.4
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 5.7e-139 498.0 337 72.1
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 7.5e-139 497.7 337 72.4
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 7.5e-139 497.7 337 72.4
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 1.3e-138 496.9 337 72.1
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 1.3e-138 496.9 337 72.1
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 1.7e-138 496.5 337 72.4
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 1.7e-138 496.5 337 71.5
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 2.8e-138 495.7 337 72.1
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 3.7e-138 495.4 338 72.2
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.1e-137 493.8 337 71.5
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 1.8e-137 493.0 338 72.2
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 3.2e-137 492.3 337 71.5
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 4.1e-137 491.9 358 68.4
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 5.4e-137 491.5 337 70.9
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 1.2e-136 490.3 337 72.1
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 2.0e-136 489.6 339 72.3
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 5.9e-136 488.0 337 71.2
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 2.9e-135 485.7 338 71.0
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 3.9e-135 485.3 337 71.2
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 5.0e-135 485.0 337 70.0
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 6.6e-135 484.6 337 71.5
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 6.6e-135 484.6 337 71.8
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 6.6e-135 484.6 339 71.4
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 6.6e-135 484.6 339 71.4
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 8.6e-135 484.2 326 73.6
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 7.3e-134 481.1 340 70.3
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 7.3e-134 481.1 337 70.6
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 1.6e-133 479.9 339 70.5
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 1.8e-132 476.5 338 70.1
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 6.8e-132 474.6 337 70.0
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 8.9e-132 474.2 277 85.2
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 2.6e-131 472.6 329 70.2
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 5.8e-131 471.5 337 69.7
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 9.8e-131 470.7 338 72.8
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 1.1e-129 467.2 340 67.1
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 4.1e-129 465.3 337 68.5
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.5e-126 456.1 338 68.3
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 2.5e-126 456.1 337 69.4
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 6.8e-124 448.0 280 75.7
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 9.8e-123 444.1 337 68.0
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 1.7e-122 443.4 339 66.4
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 7.1e-121 438.0 337 66.2
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.6e-120 436.8 337 66.5
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 3.5e-120 435.6 337 65.6
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.0e-119 434.1 344 64.0
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 1.3e-119 433.7 293 73.4
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.3e-119 433.0 341 64.5
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 2.3e-119 433.0 337 65.0
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 2.3e-119 433.0 337 65.6
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 3.0e-119 432.6 305 70.5
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 6.6e-119 431.4 353 62.9
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 3.3e-118 429.1 338 65.1
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 5.6e-118 428.3 338 65.1
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 7.3e-118 427.9 339 65.2
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 4.7e-117 425.2 339 64.9
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 1.4e-116 423.7 340 64.7
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 4.0e-116 422.2 339 64.0
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 4.0e-116 422.2 337 63.5
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 6.8e-116 421.4 345 64.1
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 4.4e-115 418.7 364 61.3
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 7.1e-113 411.4 340 60.9
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 3.5e-112 409.1 352 59.7
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 8.6e-111 404.4 341 61.0
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 8.6e-111 404.4 340 59.1
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 1.1e-110 404.1 306 65.7
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 5.6e-110 401.7 337 63.8
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 4.6e-104 382.1 337 58.8
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 4.3e-102 375.6 314 62.1
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 1.8e-100 370.2 335 57.9
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 7.6e-99 364.8 355 50.4
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 2.2e-98 363.2 334 57.5
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 7.3e-94 348.2 281 60.5
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 9.6e-94 347.8 215 80.9
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 9.9e-91 337.8 351 53.3
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 1.9e-89 333.6 277 62.8
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 4.8e-85 318.9 218 72.0
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 6.5e-82 308.5 332 49.1
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 3.5e-80 302.8 340 46.8
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 4.3e-78 295.8 308 53.6
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 3.8e-74 282.7 214 65.9
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 1.0e-71 274.6 371 41.5
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 3.1e-68 263.1 198 67.2
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 7.7e-67 258.5 326 48.8
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 1.0e-66 258.1 195 65.1
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 1.0e-63 248.1 161 76.4
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 8.8e-55 218.4 146 74.0
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 2.0e-54 217.2 198 57.6
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.1e-52 211.5 150 70.0
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 1.0e-50 204.9 129 76.7
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 3.6e-48 196.4 309 41.1
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 6.1e-48 195.7 142 71.1
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 1.4e-44 184.5 169 59.8
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 9.1e-44 181.8 251 43.4
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 8.5e-42 175.3 100 90.0
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.1e-40 170.6 100 88.0
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 5.7e-38 162.5 142 62.0
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 5.4e-36 156.0 179 45.8
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.7e-35 153.7 110 75.5
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.8e-31 141.0 72 98.6
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 2.6e-30 137.1 114 61.4
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 5.7e-30 136.0 138 52.2
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 3.7e-29 133.3 114 57.9
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 3.8e-26 123.2 123 52.8
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 5.4e-20 102.8 385 24.4
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 5.4e-20 102.8 77 63.6
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 4.0e-15 86.7 384 24.0
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-14 84.3 135 34.8
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 1.6e-11 74.7 55 63.6


User provided reference genes

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