Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002239 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.0e-38 162.9 80 100.0
CSS0017686 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.9e-29 132.1 73 89.0
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 1.6e-12 75.9 41 85.4
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.7e-12 75.1 41 87.8
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 1.4e-11 72.8 41 80.5
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 2.3e-11 72.0 41 80.5
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 3.0e-11 71.6 41 80.5
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 4.0e-11 71.2 41 78.0
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 4.0e-11 71.2 41 85.4
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 4.0e-11 71.2 41 78.0
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 4.0e-11 71.2 41 75.6
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 6.7e-11 70.5 41 78.0
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 8.8e-11 70.1 41 75.6
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 1.5e-10 69.3 41 75.6
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 2.0e-10 68.9 41 78.0
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 2.6e-10 68.6 41 75.6
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 3.3e-10 68.2 41 78.0
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 4.4e-10 67.8 41 78.0
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 4.4e-10 67.8 41 75.6
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 4.4e-10 67.8 41 78.0
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 4.4e-10 67.8 41 78.0
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 7.5e-10 67.0 41 73.2
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 7.5e-10 67.0 41 78.0
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 7.5e-10 67.0 41 75.6
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 7.5e-10 67.0 44 70.5
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 7.5e-10 67.0 41 75.6
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 1.3e-09 66.2 41 73.2
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 1.3e-09 66.2 41 75.6
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 1.7e-09 65.9 41 75.6
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 1.7e-09 65.9 41 75.6
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 1.7e-09 65.9 41 75.6
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 1.7e-09 65.9 41 73.2
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 1.7e-09 65.9 41 75.6
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 2.2e-09 65.5 41 70.7
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 2.8e-09 65.1 41 75.6
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 2.8e-09 65.1 41 75.6
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 3.7e-09 64.7 41 75.6
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 3.7e-09 64.7 41 70.7
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 3.7e-09 64.7 41 73.2
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 3.7e-09 64.7 41 73.2
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 6.3e-09 63.9 39 79.5
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 6.3e-09 63.9 41 75.6
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 6.3e-09 63.9 44 70.5
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 6.3e-09 63.9 41 75.6
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 8.2e-09 63.5 41 70.7
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 8.2e-09 63.5 41 68.3
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 8.2e-09 63.5 41 73.2
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 1.1e-08 63.2 41 70.7
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 1.1e-08 63.2 41 65.9
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 1.4e-08 62.8 41 73.2
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 1.4e-08 62.8 45 62.2
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 1.4e-08 62.8 41 73.2
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 1.8e-08 62.4 41 73.2
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 1.8e-08 62.4 41 70.7
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.8e-08 62.4 41 68.3
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 1.8e-08 62.4 41 70.7
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 2.4e-08 62.0 41 73.2
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 2.4e-08 62.0 41 70.7
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 3.1e-08 61.6 41 70.7
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 3.1e-08 61.6 41 68.3
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 4.1e-08 61.2 41 68.3
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 4.1e-08 61.2 41 70.7
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 4.1e-08 61.2 41 68.3
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 5.3e-08 60.8 41 68.3
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 7.0e-08 60.5 41 65.9
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 7.0e-08 60.5 41 65.9
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 1.2e-07 59.7 41 70.7
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.2e-07 59.7 41 68.3
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 1.6e-07 59.3 41 68.3
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.6e-07 59.3 41 65.9
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 2.0e-07 58.9 41 68.3
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 2.0e-07 58.9 41 68.3
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 2.7e-07 58.5 41 70.7
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 2.7e-07 58.5 33 81.8
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 3.5e-07 58.2 41 65.9
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 3.5e-07 58.2 41 68.3
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 3.5e-07 58.2 41 68.3
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 3.5e-07 58.2 41 68.3
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 3.5e-07 58.2 41 68.3
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 4.5e-07 57.8 41 63.4
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 5.9e-07 57.4 41 63.4
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 5.9e-07 57.4 41 68.3
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 1.0e-06 56.6 41 65.9
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 1.0e-06 56.6 41 65.9
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 1.0e-06 56.6 42 57.1
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 1.3e-06 56.2 41 65.9
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 1.3e-06 56.2 41 63.4
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 1.3e-06 56.2 41 65.9
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 1.3e-06 56.2 41 68.3
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 1.7e-06 55.8 41 63.4
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.7e-06 55.8 41 63.4
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 1.7e-06 55.8 41 68.3
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 2.9e-06 55.1 42 64.3
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 5.0e-06 54.3 41 65.9


User provided reference genes

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