Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1641.3 809 100.0
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1490.3 809 92.6
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1396.3 810 83.7
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1375.1 810 82.3
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1357.8 812 81.8
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1347.8 813 81.7
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1347.0 813 81.8
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1346.6 813 81.7
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1343.6 811 81.0
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1342.8 812 80.2
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1342.0 812 80.0
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1341.6 812 80.4
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1340.5 916 75.1
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1332.0 813 79.6
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1332.0 812 79.3
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1331.6 812 79.7
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1331.2 812 80.2
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1330.1 811 79.8
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1330.1 811 80.0
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1329.3 810 80.1
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1329.3 811 80.0
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1327.4 811 80.5
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1327.0 811 80.3
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1325.5 813 79.3
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1325.1 812 79.3
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1324.3 811 80.0
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1321.6 813 79.6
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1318.5 812 79.3
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1318.1 812 79.6
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1315.8 816 78.8
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1315.4 811 78.4
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1315.1 809 79.5
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1313.9 811 78.7
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1313.5 812 78.4
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1313.5 811 78.2
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1312.4 813 79.7
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1312.4 800 80.0
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1312.0 811 78.5
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1311.2 816 78.7
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1311.2 786 81.4
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1310.4 811 77.8
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1309.3 813 78.2
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1308.9 810 79.4
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1308.5 816 78.6
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1305.8 812 78.8
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1305.8 823 78.3
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1305.8 813 79.6
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1305.4 810 78.8
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1303.5 808 77.4
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1303.1 812 77.8
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1301.6 819 78.0
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1301.2 809 77.8
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1300.4 810 78.5
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1298.1 807 77.6
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1297.3 808 77.5
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1296.6 811 77.4
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1295.8 967 70.1
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1294.6 810 77.9
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1294.3 801 78.4
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1293.5 810 77.7
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1290.0 811 76.3
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1285.8 811 77.9
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1283.5 810 77.7
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1282.3 813 76.8
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1278.8 888 71.4
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1275.4 807 77.0
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1275.4 808 76.4
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1271.5 825 74.8
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1267.3 828 76.6
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1263.8 812 76.6
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1263.1 871 72.3
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1255.0 810 74.6
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1253.0 810 74.4
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1250.3 811 74.0
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1249.6 812 74.1
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1246.5 811 73.7
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1244.6 811 73.7
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1243.8 812 73.9
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1243.0 811 74.4
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1242.3 811 73.2
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1238.0 811 73.0
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1238.0 811 73.0
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1236.5 811 73.1
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1236.1 812 73.3
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1234.2 812 72.9
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1233.8 811 73.4
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1232.6 812 73.0
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1232.2 816 73.0
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1228.8 807 73.5
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1228.0 818 73.5
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1226.1 810 75.3
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1224.9 810 74.4
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1222.6 813 73.1
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1218.0 814 73.7
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1208.0 809 73.5
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1207.6 867 68.4
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1205.3 808 73.0
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1204.9 856 69.4
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1197.2 806 71.5
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1195.3 810 74.2
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1186.0 813 70.5
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1177.5 825 71.9
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1173.7 786 74.3
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1170.2 813 70.4
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1168.3 813 73.3
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1165.6 770 73.4
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1164.1 811 69.8
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1159.8 964 63.7
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1125.2 811 70.4
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1089.7 814 65.0
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 0.0e+00 1078.5 606 86.1
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 3.5e-309 1064.7 821 63.8
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 1.5e-304 1049.3 816 67.4
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 1.4e-289 999.6 805 61.9
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 5.0e-287 991.1 807 62.7
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 8.0e-253 877.5 783 60.5
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 2.5e-193 679.9 854 43.7
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 4.2e-193 679.1 381 84.8
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 8.0e-168 595.1 840 40.8
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 8.2e-165 585.1 811 44.3
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 6.8e-143 512.3 848 36.9
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 4.4e-142 509.6 941 33.7
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 6.6e-122 442.6 372 59.9
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 3.6e-120 436.8 316 67.4
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.2e-110 405.2 244 76.2
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 2.2e-101 374.4 344 59.0
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 1.0e-82 312.4 172 88.4
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 2.8e-80 304.3 241 66.8
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 1.8e-74 285.0 202 69.3
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 2.6e-62 244.6 320 44.7
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 3.2e-52 211.1 142 76.1
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 1.4e-42 179.1 90 91.1
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 1.2e-38 166.0 194 54.1
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 2.7e-38 164.9 106 75.5
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 3.2e-36 157.9 108 63.9
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 6.1e-35 153.7 101 73.3
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 8.0e-35 153.3 270 39.3
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.5e-33 149.1 95 77.9
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 1.2e-30 139.4 181 46.4
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 1.5e-28 132.5 121 60.3
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 1.6e-27 129.0 191 42.9
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 4.7e-27 127.5 80 77.5
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 6.1e-27 127.1 190 42.1
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 2.0e-25 122.1 122 55.7
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 1.6e-22 112.5 113 46.9
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 1.3e-21 109.4 69 76.8
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 3.9e-21 107.8 115 53.0
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 1.9e-20 105.5 263 29.7
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 5.2e-18 97.4 145 47.6
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.5e-17 95.9 50 86.0
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 4.9e-16 90.9 72 63.9
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 3.0e-13 81.6 43 79.1
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 3.0e-13 81.6 59 69.5
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 6.6e-13 80.5 57 70.2
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 6.6e-13 80.5 68 61.8
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 3.3e-12 78.2 80 60.0
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 3.6e-11 74.7 129 38.0
Rhsim05G0038700 Rhododendron simsii HOM05D031300 ORTHO05D339751 2.0e-09 68.9 81 51.9
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 2.6e-09 68.6 57 64.9
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 3.4e-09 68.2 60 50.0
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 4.4e-09 67.8 57 64.9
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 4.4e-09 67.8 57 64.9
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 1.7e-08 65.9 57 61.4
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.2e-08 65.5 54 66.7
Gohir.A09G086698 Gossypium hirsutum HOM05D003868 ORTHO05D017991 6.4e-08 63.9 54 64.8
Gohir.D03G046101 Gossypium hirsutum HOM05D003868 ORTHO05D017991 6.4e-08 63.9 54 64.8
Gohir.D05G358720 Gossypium hirsutum HOM05D003868 ORTHO05D017991 6.4e-08 63.9 54 64.8
Gohir.D13G088850 Gossypium hirsutum HOM05D003868 ORTHO05D017991 6.4e-08 63.9 54 64.8
BcaC02g07665 Brassica carinata HOM05D001091 ORTHO05D001020 1.1e-07 63.2 314 24.2
Nn8g40042 Nelumbo nucifera HOM05D004364 ORTHO05D006299 4.1e-07 61.2 34 79.4
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 5.4e-07 60.8 436 20.0
MCO15G019 Micromonas commoda HOM05D002714 ORTHO05D020415 7.1e-07 60.5 560 22.1
BcaB06g28879 Brassica carinata HOM05D001091 ORTHO05D001020 2.7e-06 58.5 298 22.5
Oeu019155.3 Olea europaea HOM05D003775 ORTHO05D004314 3.5e-06 58.2 274 25.9
GSVIVG01015375001 Vitis vinifera HOM05D002381 ORTHO05D002480 7.8e-06 57.0 41 70.7


User provided reference genes

Program Settings