Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1360.9 706 100.0
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1281.5 708 93.1
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1273.1 708 92.9
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1272.7 708 92.9
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1236.5 701 89.9
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1232.6 708 89.0
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1231.9 708 90.0
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1230.7 708 89.0
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1223.0 702 89.5
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1222.6 699 88.8
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1220.7 714 89.4
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1219.9 706 88.4
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1216.1 708 88.0
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1214.1 706 88.1
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1214.1 736 86.1
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1213.7 701 88.6
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1213.4 698 88.5
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1213.4 689 89.8
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1211.1 719 87.6
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1210.3 708 87.1
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1209.1 706 86.7
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1207.6 697 87.9
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1206.0 708 87.0
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1206.0 708 87.0
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1205.3 708 86.9
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1204.9 703 88.1
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1204.9 689 88.7
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1202.2 706 87.0
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1200.3 699 87.1
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1199.9 699 88.7
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1198.3 706 87.0
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1197.2 706 86.8
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1196.8 706 86.8
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1196.4 707 86.6
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1193.7 708 86.0
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1190.6 731 84.7
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1189.9 690 88.4
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1189.5 708 86.7
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1189.1 696 86.8
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1186.0 688 87.6
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1185.6 699 87.7
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1185.6 692 87.3
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1185.2 671 89.7
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1184.5 689 86.9
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1184.5 689 86.9
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1184.5 689 86.9
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1182.5 690 87.2
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1181.8 705 86.5
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1181.0 697 85.7
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1177.5 723 84.1
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1176.0 688 86.8
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1175.6 693 86.3
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1175.2 707 85.0
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1172.9 733 83.1
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1171.0 688 86.5
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1167.1 688 86.5
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1166.4 688 86.3
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1163.3 706 84.4
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1162.5 706 85.4
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1162.5 697 85.7
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1161.7 697 85.8
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1161.7 698 85.8
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1161.0 694 85.0
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1161.0 709 83.9
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1158.7 699 83.4
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1158.7 707 84.6
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 699 83.4
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 708 82.9
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 699 83.3
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 699 83.3
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1156.4 699 83.3
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1155.2 699 83.1
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1153.7 694 84.1
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 699 83.0
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1152.9 699 83.3
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1152.5 699 83.0
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1152.1 715 83.8
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 700 83.1
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1150.2 668 86.5
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1149.0 708 83.1
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1142.1 699 85.1
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 738 79.5
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1140.6 781 77.1
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1139.8 699 82.4
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1136.7 686 83.8
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1133.2 694 82.3
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1132.9 692 82.8
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1129.8 686 84.1
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1128.6 718 82.0
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 0.0e+00 1115.9 682 83.4
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1112.1 692 80.9
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1111.7 694 81.6
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1102.4 697 80.6
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1097.4 738 77.8
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1095.9 666 85.0
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1095.5 741 76.8
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 1.9e-311 1072.0 706 77.9
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 7.1e-306 1053.5 690 77.8
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 2.5e-298 1028.5 736 72.0
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 5.1e-288 994.2 613 82.4
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 6.7e-288 993.8 591 84.6
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.5e-287 991.9 631 82.1
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 6.1e-281 970.7 690 70.4
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 6.1e-281 970.7 690 70.4
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 7.4e-279 963.8 682 70.2
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.1e-277 958.4 584 82.4
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 1.9e-274 949.1 687 70.3
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 3.0e-272 941.8 589 83.0
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 2.0e-271 939.1 691 69.2
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.7e-270 936.0 683 73.5
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 2.7e-265 918.7 566 81.3
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 4.0e-264 914.8 554 83.8
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 2.9e-259 898.7 509 90.4
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.1e-253 880.2 675 70.2
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 6.6e-243 844.3 492 87.6
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.7e-227 793.1 682 58.2
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 6.6e-219 764.6 684 56.1
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.0e-207 726.5 423 84.6
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.2e-204 717.2 468 82.3
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 9.4e-157 558.1 328 82.3
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 2.6e-154 550.1 758 43.5
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 6.3e-145 518.8 773 38.2
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 4.0e-139 499.6 273 93.8
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.8e-136 490.7 280 86.4
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 4.3e-125 453.0 269 84.0
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 5.8e-122 442.6 359 63.8
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 2.0e-114 417.5 744 35.5
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.9e-113 413.7 233 85.8
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 8.3e-113 412.1 237 87.3
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.6e-111 407.9 253 79.4
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.9e-109 401.0 258 82.2
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.4e-104 384.8 251 81.3
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.5e-82 310.1 192 79.2
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 6.0e-79 299.7 215 71.2
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 1.4e-75 288.5 193 81.3
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 8.4e-73 279.3 195 74.4
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.5e-72 277.7 148 88.5
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.3e-62 245.4 167 77.2
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 4.3e-61 240.4 155 66.5
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 4.8e-60 236.9 192 70.8
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 7.7e-58 229.6 156 75.0
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 4.6e-55 220.3 214 59.8
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 7.9e-55 219.5 180 69.4
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.7e-49 201.8 122 85.2
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.4e-48 198.7 488 29.1
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.4e-48 198.7 114 88.6
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 3.1e-43 181.0 107 92.5
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 1.7e-41 175.3 104 82.7
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.5e-37 162.2 111 75.7
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 7.2e-32 143.3 100 74.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 8.8e-30 136.3 100 71.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 8.8e-30 136.3 100 71.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.3e-28 132.5 151 53.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.0e-26 125.2 81 76.5
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 4.5e-26 124.0 72 87.5
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.9e-24 118.6 73 83.6
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.5e-21 109.0 69 75.4
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 5.7e-21 107.1 118 53.4
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 1.3e-20 105.9 62 79.0
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.7e-20 104.4 57 86.0
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.1e-19 101.3 93 61.3
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 3.1e-19 101.3 77 66.2
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 3.1e-19 101.3 59 81.4
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 8.6e-17 93.2 65 75.4
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 7.5e-13 80.1 59 71.2
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 1.1e-11 76.3 78 50.0
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.2e-11 74.7 59 69.5
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 2.0e-10 72.0 64 64.1
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 5.9e-10 70.5 40 90.0


User provided reference genes

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