Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 5.7e-167 590.9 307 100.0
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 5.6e-106 388.3 314 64.6
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.8e-104 383.3 306 64.7
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.3e-91 340.5 281 65.8
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 1.1e-88 330.9 308 59.1
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 1.2e-87 327.4 308 58.4
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 1.3e-62 244.2 303 46.2
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 9.4e-61 238.0 295 46.8
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 1.2e-55 221.1 254 46.5
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 3.4e-55 219.5 346 39.6
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 5.9e-55 218.8 279 43.4
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 3.8e-54 216.1 303 41.6
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 1.6e-52 210.7 434 35.3
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 1.8e-51 207.2 282 45.0
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 5.2e-51 205.7 282 41.8
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 7.4e-50 201.8 307 41.4
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 1.2e-47 194.5 253 43.1
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 5.9e-47 192.2 274 42.3
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.7e-46 190.7 271 39.5
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 8.5e-46 188.3 311 38.3
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 1.9e-45 187.2 253 43.9
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 4.2e-45 186.0 274 42.7
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.2e-44 184.5 316 37.0
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 1.6e-44 184.1 170 58.8
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 3.6e-44 183.0 311 37.3
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 1.5e-42 177.6 268 38.8
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 1.7e-41 174.1 266 39.1
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.2e-41 173.7 132 65.9
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 3.1e-40 169.9 257 39.7
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 5.9e-39 165.6 163 48.5
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.0e-38 162.5 295 35.9
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 2.5e-37 160.2 161 48.4
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 7.2e-37 158.7 334 35.3
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 1.6e-36 157.5 253 38.7
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 3.6e-36 156.4 334 35.3
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 6.1e-36 155.6 259 38.2
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 6.1e-36 155.6 319 32.6
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 1.0e-35 154.8 328 34.5
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 1.8e-35 154.1 262 37.8
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 2.3e-35 153.7 304 35.9
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 5.2e-35 152.5 186 45.2
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 1.2e-34 151.4 256 37.1
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.0e-34 150.6 328 33.5
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 2.6e-34 150.2 290 34.5
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 7.5e-34 148.7 327 32.7
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 2.2e-33 147.1 273 34.8
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 6.3e-33 145.6 230 39.1
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 8.3e-33 145.2 253 36.4
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 1.1e-32 144.8 235 35.7
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 1.2e-31 141.4 260 35.8
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.0e-31 140.6 305 31.8
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 4.5e-31 139.4 296 32.1
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 1.3e-30 137.9 319 32.3
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 2.9e-30 136.7 284 31.7
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.5e-29 134.4 353 30.9
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 2.5e-29 133.7 262 30.9
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 1.2e-28 131.3 152 49.3
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 3.6e-28 129.8 249 36.9
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 6.1e-28 129.0 331 34.1
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.0e-27 128.3 336 30.7
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 1.4e-27 127.9 289 33.2
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 3.0e-27 126.7 245 35.5
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.0e-26 124.0 330 28.5
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 3.4e-26 123.2 252 31.7
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 9.8e-26 121.7 328 29.9
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.2e-25 120.6 297 31.0
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 3.7e-25 119.8 244 34.8
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 6.3e-25 119.0 247 33.2
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 6.3e-25 119.0 245 33.9
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 1.4e-24 117.9 294 31.0
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 1.8e-24 117.5 244 33.6
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 3.1e-24 116.7 244 33.6
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 5.4e-24 115.9 239 32.2
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 5.4e-24 115.9 239 32.2
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 1.2e-23 114.8 244 33.6
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 2.7e-23 113.6 244 33.2
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 2.7e-23 113.6 246 33.3
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 4.5e-23 112.8 249 30.9
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 1.0e-22 111.7 245 31.8
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 1.7e-22 110.9 169 39.6
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 2.9e-22 110.2 244 31.1
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 2.9e-22 110.2 254 29.9
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 2.9e-22 110.2 247 31.6
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 3.8e-22 109.8 244 30.7
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 5.0e-22 109.4 152 44.1
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 8.6e-22 108.6 244 30.7
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 9.5e-21 105.1 134 45.5
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 1.6e-20 104.4 170 40.0
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 2.8e-20 103.6 114 51.8
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 6.1e-20 102.4 247 32.0
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 8.0e-20 102.1 164 37.8
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 6.8e-19 99.0 167 37.7
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 1.2e-18 98.2 162 37.7
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 4.4e-18 96.3 280 31.4
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 5.7e-18 95.9 254 31.9
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 2.2e-17 94.0 249 30.9
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.2e-16 90.1 226 27.9
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 2.7e-15 87.0 174 39.1
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 5.9e-15 85.9 210 30.0
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 1.0e-14 85.1 226 28.8
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 1.1e-13 81.6 141 35.5
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 1.5e-13 81.3 134 39.6
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 2.5e-13 80.5 210 31.0
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.5e-13 80.5 193 31.6
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 2.5e-13 80.5 193 31.6
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.1e-12 77.4 193 31.1
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 2.1e-12 77.4 142 34.5
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.8e-12 77.0 201 30.3
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 8.0e-12 75.5 141 32.6
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.4e-11 74.7 144 31.2
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 3.1e-11 73.6 155 32.3
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 5.2e-11 72.8 138 33.3
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 6.8e-11 72.4 137 31.4
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 6.8e-11 72.4 141 34.8
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 8.9e-11 72.0 209 28.7
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 1.2e-10 71.6 154 32.5
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.2e-10 71.6 195 29.2
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.2e-10 71.6 143 32.9
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 2.0e-10 70.9 147 31.3
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 2.6e-10 70.5 139 30.9
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.6e-10 70.5 202 26.2
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 3.4e-10 70.1 151 29.8
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 5.8e-10 69.3 148 34.5
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 7.5e-10 68.9 138 31.9
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 9.8e-10 68.6 147 29.9
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 1.7e-09 67.8 138 30.4
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 1.7e-09 67.8 147 29.9
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.7e-09 67.8 52 63.5
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 2.2e-09 67.4 143 28.7
Rhsim05G0193300 Rhododendron simsii HOM05D022761 ORTHO05D022494 2.2e-09 67.4 135 30.4
RhsimUnG0081700 Rhododendron simsii HOM05D022761 ORTHO05D022494 2.2e-09 67.4 135 30.4
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 2.9e-09 67.0 135 31.1
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 2.9e-09 67.0 147 29.9
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 3.7e-09 66.6 208 26.0
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 8.3e-09 65.5 47 59.6
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 8.3e-09 65.5 47 59.6
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 8.3e-09 65.5 71 45.1
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 8.3e-09 65.5 151 29.8
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 1.4e-08 64.7 150 32.7
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 1.4e-08 64.7 137 29.9
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 1.9e-08 64.3 149 34.2
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 2.4e-08 63.9 128 34.4
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 9.2e-08 62.0 59 52.5
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 1.2e-07 61.6 118 30.5
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.2e-07 61.6 139 30.9
Medtr6g054960 Medicago truncatula HOM05D003520 ORTHO05D003332 4.6e-07 59.7 202 27.7
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 6.0e-07 59.3 160 27.5
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 6.0e-07 59.3 136 29.4
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 7.8e-07 58.9 166 31.3
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 7.8e-07 58.9 136 29.4
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 7.8e-07 58.9 139 31.7
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 7.8e-07 58.9 155 31.6
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 1.7e-06 57.8 58 53.4
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 2.3e-06 57.4 152 27.6
SEGI_38205 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 2.3e-06 57.4 125 31.2
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 6.6e-06 55.8 151 34.4
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 6.6e-06 55.8 157 33.1
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 6.6e-06 55.8 166 32.5


User provided reference genes

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