Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 2.6e-292 1008.1 542 100.0
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 2.6e-138 496.5 646 55.4
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 8.4e-105 385.2 571 51.5
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 4.6e-103 379.4 506 49.2
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 3.1e-99 366.7 591 43.1
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 9.0e-99 365.2 582 46.6
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 2.6e-98 363.6 561 42.6
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 8.4e-97 358.6 492 48.2
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 1.9e-93 347.4 584 40.9
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.3e-92 344.7 506 44.1
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 2.4e-88 330.5 560 40.7
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 3.9e-86 323.2 574 39.5
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 1.5e-85 321.2 483 47.8
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 2.1e-84 317.4 439 46.5
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 1.4e-83 314.7 518 45.4
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 4.0e-83 313.2 512 45.5
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 5.3e-83 312.8 568 38.9
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 2.6e-82 310.5 483 47.6
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 7.1e-80 302.4 500 46.0
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 1.6e-79 301.2 580 41.0
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 6.0e-79 299.3 558 40.7
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 1.8e-78 297.7 483 42.0
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 3.3e-77 293.5 505 40.4
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 2.1e-76 290.8 505 41.2
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 4.8e-76 289.7 570 38.4
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 2.4e-75 287.3 487 40.5
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 2.6e-74 283.9 529 36.3
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 2.5e-72 277.3 497 38.4
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 2.5e-72 277.3 436 47.7
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 3.2e-72 276.9 248 62.1
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 2.1e-71 274.2 580 38.1
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 6.1e-71 272.7 497 42.7
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 1.1e-69 268.5 549 36.6
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 1.9e-69 267.7 580 35.7
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 4.3e-69 266.5 484 44.4
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 9.7e-69 265.4 553 35.6
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 8.2e-68 262.3 579 39.2
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 1.1e-67 261.9 495 36.8
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 1.4e-67 261.5 433 41.1
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 6.9e-67 259.2 492 38.4
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 1.5e-66 258.1 493 38.1
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 2.0e-66 257.7 536 36.9
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 5.9e-66 256.1 528 36.7
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 1.3e-65 255.0 582 34.0
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 2.9e-65 253.8 521 37.0
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 3.8e-65 253.4 579 39.7
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 5.0e-65 253.1 500 40.0
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 3.2e-64 250.4 581 34.3
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 6.1e-63 246.1 484 41.1
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 1.4e-62 245.0 566 38.5
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 8.8e-62 242.3 522 33.3
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 3.3e-61 240.4 475 41.3
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 4.4e-61 240.0 556 35.8
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 2.2e-60 237.7 576 37.0
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 2.8e-60 237.3 476 37.2
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 8.2e-60 235.7 526 35.4
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 1.1e-59 235.3 484 40.5
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 1.8e-59 234.6 491 40.1
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 2.4e-59 234.2 491 40.1
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 2.2e-57 227.6 557 33.8
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 2.5e-56 224.2 542 35.6
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 4.2e-56 223.4 518 33.2
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 9.4e-56 222.2 493 33.1
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 1.6e-55 221.5 484 35.1
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 3.0e-54 217.2 469 36.0
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 3.0e-54 217.2 597 35.8
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 3.9e-54 216.9 437 37.3
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 2.0e-53 214.5 482 39.2
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 2.2e-52 211.1 518 38.0
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 4.8e-52 209.9 444 36.0
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 1.4e-51 208.4 486 35.6
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 1.4e-51 208.4 446 35.9
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 1.4e-51 208.4 212 66.0
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 2.9e-49 200.7 583 31.0
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 1.0e-46 192.2 575 34.1
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 3.0e-46 190.7 495 36.0
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 1.2e-45 188.7 604 28.3
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 4.4e-45 186.8 546 28.9
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 2.8e-44 184.1 622 29.3
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 6.3e-44 183.0 608 33.2
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 7.0e-43 179.5 485 36.7
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 5.9e-42 176.4 538 30.5
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 7.7e-42 176.0 586 32.6
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 1.3e-41 175.3 497 30.8
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 1.3e-41 175.3 571 29.2
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 8.5e-41 172.6 563 28.4
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 1.9e-40 171.4 516 28.9
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 7.2e-40 169.5 524 29.0
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 7.2e-40 169.5 524 29.0
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 1.6e-39 168.3 538 28.1
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 2.7e-39 167.5 484 28.9
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 2.7e-39 167.5 489 28.8
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 3.6e-39 167.2 418 32.5
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 6.1e-39 166.4 494 28.3
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 6.1e-39 166.4 537 27.9
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 1.0e-38 165.6 317 43.5
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 1.0e-38 165.6 489 31.1
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 2.0e-37 161.4 488 28.3
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 2.6e-37 161.0 307 39.7
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 1.3e-36 158.7 479 30.5
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 8.3e-36 156.0 544 26.3
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 1.1e-35 155.6 536 27.2
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 1.0e-33 149.1 582 31.1
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 3.2e-32 144.1 108 65.7
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 3.2e-32 144.1 514 29.4
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 6.1e-31 139.8 314 32.8
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 4.9e-28 130.2 288 34.4
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 1.3e-25 122.1 96 64.6
QL09p008133 Quercus lobata HOM05D005626 ORTHO05D007372 3.8e-25 120.6 82 75.6
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 1.9e-24 118.2 451 28.2
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.4e-22 112.1 200 40.0
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 4.0e-22 110.5 83 67.5
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.2e-19 100.9 64 82.8
SEGI_36936 Sequoiadendron giganteum HOM05D005626 ORTHO05D007372 4.1e-19 100.5 123 43.1
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 7.0e-19 99.8 352 28.4
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 9.2e-19 99.4 395 26.8
FAN10G4199 Fragaria x ananassa HOM05D005626 ORTHO05D007372 3.0e-17 94.4 121 65.3
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.1e-15 88.2 368 25.5
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 2.8e-15 87.8 77 55.8
Actinidia06140 Actinidia chinensis HOM05D005626 ORTHO05D007372 1.2e-13 82.4 62 67.7
Lj1A1021T50 Lonicera japonica HOM05D005626 ORTHO05D007372 1.2e-13 82.4 155 34.8
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 2.6e-13 81.3 101 42.6
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 1.7e-12 78.6 111 41.4
MD07G1293400 Malus domestica HOM05D005626 ORTHO05D007372 3.2e-11 74.3 121 40.5
QL09p008114 Quercus lobata HOM05D005626 ORTHO05D007372 2.7e-10 71.2 52 65.4
Lj1C1019T10 Lonicera japonica HOM05D005626 ORTHO05D007372 1.2e-07 62.4 83 42.2
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 1.1e-06 59.3 127 32.3


User provided reference genes

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