Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_37657 Corchorus olitorius HOM05D001934 ORTHO05D027028 7.0e-69 263.8 134 100.0
COL.COLO4_03616 Corchorus olitorius HOM05D001934 ORTHO05D002139 1.0e-11 73.9 35 100.0
Gohir.A11G166900 Gossypium hirsutum HOM05D001934 ORTHO05D002139 5.1e-11 71.6 35 94.3
Gorai.007G185500 Gossypium raimondii HOM05D001934 ORTHO05D002139 5.1e-11 71.6 35 94.3
Thecc.04G125900 Theobroma cacao HOM05D001934 ORTHO05D002139 6.6e-11 71.2 35 94.3
CANSAT78G0902 Cannabis sativa HOM05D001934 ORTHO05D002139 8.6e-11 70.9 36 88.9
CiPaw.03G066000 Carya illinoinensis HOM05D001934 ORTHO05D002139 1.1e-10 70.5 35 94.3
Haze_14199 Corylus avellana HOM05D001934 ORTHO05D002139 1.1e-10 70.5 35 94.3
Cpa.g.sc170.9 Carica papaya HOM05D001934 ORTHO05D002139 1.5e-10 70.1 35 88.6
Cfa007877 Carpinus fangiana HOM05D001934 ORTHO05D002139 1.9e-10 69.7 35 91.4
Duzib133G0659 Durio zibethinus HOM05D001934 ORTHO05D002139 3.3e-10 68.9 35 88.6
Gohir.D11G173200 Gossypium hirsutum HOM05D001934 ORTHO05D002139 3.3e-10 68.9 35 91.4
TAR622G1193 Trochodendron aralioides HOM05D001934 ORTHO05D002139 3.3e-10 68.9 91 47.3
arahy.Tifrunner.gnm1.ann1.Q72QFH Arachis hypogaea HOM05D001934 ORTHO05D002139 4.3e-10 68.6 40 80.0
arahy.Tifrunner.gnm1.ann1.TBH1BX Arachis hypogaea HOM05D001934 ORTHO05D002139 4.3e-10 68.6 40 80.0
Prupe.3G150300 Prunus persica HOM05D001934 ORTHO05D002139 4.3e-10 68.6 35 88.6
FAN26G0892 Fragaria x ananassa HOM05D001934 ORTHO05D002139 5.6e-10 68.2 43 72.1
Ciclev10010910m.g Citrus clementina HOM05D001934 ORTHO05D002139 7.3e-10 67.8 45 73.3
FvH4_1g29000 Fragaria vesca HOM05D001934 ORTHO05D002139 7.3e-10 67.8 58 58.6
FAN19G2355 Fragaria x ananassa HOM05D001934 ORTHO05D002139 7.3e-10 67.8 58 58.6
FAN23G2419 Fragaria x ananassa HOM05D001934 ORTHO05D002139 7.3e-10 67.8 58 58.6
MD00G1054100 Malus domestica HOM05D001934 ORTHO05D002139 7.3e-10 67.8 35 88.6
MBI16_g21169_MAGBIO Magnolia biondii HOM05D001934 ORTHO05D002139 9.6e-10 67.4 35 85.7
Hund13697 Selenicereus undatus HOM05D001934 ORTHO05D002139 9.6e-10 67.4 35 85.7
Psat3g096760 Pisum sativum HOM05D001934 ORTHO05D002139 1.2e-09 67.0 35 88.6
Potri.004G094200 Populus trichocarpa HOM05D001934 ORTHO05D002139 1.2e-09 67.0 35 88.6
Phvul.008G009200 Phaseolus vulgaris HOM05D001934 ORTHO05D002139 1.6e-09 66.6 36 86.1
QL02p049289 Quercus lobata HOM05D001934 ORTHO05D002139 1.6e-09 66.6 35 85.7
VMungo1383G1252 Vigna mungo HOM05D001934 ORTHO05D002139 1.6e-09 66.6 36 86.1
AUR62023261 Chenopodium quinoa HOM05D001934 ORTHO05D002139 2.1e-09 66.2 85 51.8
Ca_08099_v3 Cicer arietinum L. HOM05D001934 ORTHO05D002139 2.1e-09 66.2 35 88.6
RcHm_v2.0_Chr3g0493691 Rosa chinensis HOM05D001934 ORTHO05D002139 2.1e-09 66.2 35 82.9
ATR0691G097 Amborella trichopoda HOM05D001934 ORTHO05D002139 2.8e-09 65.9 84 47.6
AUR62023215 Chenopodium quinoa HOM05D001934 ORTHO05D002139 2.8e-09 65.9 35 85.7
Manes.02G072600 Manihot esculenta HOM05D001934 ORTHO05D002139 2.8e-09 65.9 35 82.9
Medtr7g082860 Medicago truncatula HOM05D001934 ORTHO05D002139 2.8e-09 65.9 35 85.7
Sabra04G0063400 Salix brachista HOM05D001934 ORTHO05D002139 2.8e-09 65.9 38 78.9
TWI53G0729 Tripterygium wilfordii HOM05D001934 ORTHO05D002139 2.8e-09 65.9 35 85.7
Atru.chr1.1572 Acer truncatum HOM05D001934 ORTHO05D002139 3.6e-09 65.5 35 88.6
Aqoxy3G03985 Aquilegia oxysepala HOM05D001934 ORTHO05D002139 3.6e-09 65.5 35 82.9
HanXRQChr09g0262461 Helianthus annuus HOM05D001934 ORTHO05D002139 3.6e-09 65.5 35 80.0
Lsat_1_v5_gn_4_156060 Lactuca sativa HOM05D001934 ORTHO05D002139 3.6e-09 65.5 35 82.9
ClCG07G016470 Citrullus lanatus HOM05D001934 ORTHO05D002139 4.7e-09 65.1 36 80.6
Glyma.18G292900 Glycine max HOM05D001934 ORTHO05D002139 4.7e-09 65.1 36 83.3
TPR.G28395 Trifolium pratense HOM05D001934 ORTHO05D002139 4.7e-09 65.1 35 82.9
GSVIVG01030942001 Vitis vinifera HOM05D001934 ORTHO05D002139 4.7e-09 65.1 35 82.9
EL10Ac2g04516 Beta vulgaris HOM05D001934 ORTHO05D002139 6.2e-09 64.7 35 85.7
ECA232G4925 Erigeron canadensis HOM05D001934 ORTHO05D002139 6.2e-09 64.7 46 63.0
Nn4g24041 Nelumbo nucifera HOM05D001934 ORTHO05D002139 6.2e-09 64.7 68 48.5
Aa31LG2G3200 Aethionema arabicum HOM05D001934 ORTHO05D002139 8.1e-09 64.3 35 82.9
PGR004G2572 Punica granatum HOM05D001934 ORTHO05D002139 8.1e-09 64.3 45 68.9
MELO3C010375.2 Cucumis melo HOM05D001934 ORTHO05D002139 1.1e-08 63.9 35 82.9
Hma1.2p1_0500F.1_g167090 Hydrangea macrophylla HOM05D001934 ORTHO05D002139 1.1e-08 63.9 35 77.1
THA.LOC104805591 Tarenaya hassleriana HOM05D001934 ORTHO05D002139 1.1e-08 63.9 35 80.0
Dinv33974 Davidia involucrata HOM05D001934 ORTHO05D002139 1.4e-08 63.5 35 77.1
Sc10g0000990 Simmondsia chinensis HOM05D001934 ORTHO05D002139 1.8e-08 63.2 35 77.1
Carub.0002s1295 Capsella rubella HOM05D001934 ORTHO05D002139 3.1e-08 62.4 35 77.1
BcaC08g46147 Brassica carinata HOM05D001934 ORTHO05D027028 4.0e-08 62.0 38 71.1
HPP92_008231 Vanilla planifolia HOM05D001934 ORTHO05D002139 4.0e-08 62.0 35 77.1
CARHR058830 Cardamine hirsuta HOM05D001934 ORTHO05D002139 6.8e-08 61.2 35 77.1
DCAR_025889 Daucus carota HOM05D001934 ORTHO05D002139 6.8e-08 61.2 35 74.3
Lj2A437T33 Lonicera japonica HOM05D001934 ORTHO05D002139 6.8e-08 61.2 35 74.3
Peaxi162Scf00458g00116 Petunia axillaris HOM05D001934 ORTHO05D002139 6.8e-08 61.2 35 77.1
AT1G66730 Arabidopsis thaliana HOM05D001934 ORTHO05D002139 8.9e-08 60.8 35 74.3
Cc07_g08410 Coffea canephora HOM05D001934 ORTHO05D002139 8.9e-08 60.8 35 68.6
Sopen02g035770 Solanum pennellii HOM05D001934 ORTHO05D002139 8.9e-08 60.8 35 74.3
SGA_v2.0_scaffold202G41482 Striga asiatica HOM05D001934 ORTHO05D002139 8.9e-08 60.8 35 74.3
BcaB03g15237 Brassica carinata HOM05D001934 ORTHO05D002139 1.2e-07 60.5 35 77.1
BcaC08g46141 Brassica carinata HOM05D001934 ORTHO05D002139 1.2e-07 60.5 35 77.1
C06p40110 Brassica napus HOM05D001934 ORTHO05D002139 1.2e-07 60.5 35 77.1
BolC6t39091H Brassica oleracea HOM05D001934 ORTHO05D002139 1.2e-07 60.5 35 77.1
Lj1g0010629 Lotus japonicus HOM05D001934 ORTHO05D002139 1.2e-07 60.5 35 82.9
Oeu047432.1 Olea europaea HOM05D001934 ORTHO05D002139 1.2e-07 60.5 80 43.8
Rhsim08G0084300 Rhododendron simsii HOM05D001934 ORTHO05D002139 1.2e-07 60.5 36 72.2
CAN.G625.65 Capsicum annuum HOM05D001934 ORTHO05D002139 2.0e-07 59.7 35 71.4
Thhalv10018010m.g Eutrema salsugineum HOM05D001934 ORTHO05D002139 2.0e-07 59.7 35 74.3
BcaC08g46144 Brassica carinata HOM05D001934 ORTHO05D027028 2.6e-07 59.3 35 74.3
BraA07t30983Z Brassica rapa HOM05D001934 ORTHO05D002139 2.6e-07 59.3 35 74.3
Eucgr.F02800 Eucalyptus grandis HOM05D001934 ORTHO05D002139 5.8e-07 58.2 35 71.4
Nitab4.5_0008597g0010 Nicotiana tabacum HOM05D001934 ORTHO05D002139 5.8e-07 58.2 34 73.5
Migut.H00252 Erythranthe guttata HOM05D001934 ORTHO05D002139 7.6e-07 57.8 35 68.6
AL2G24890 Arabidopsis lyrata HOM05D001934 ORTHO05D002139 1.7e-06 56.6 35 68.6
vmacro18063 Vaccinium macrocarpon HOM05D001934 ORTHO05D002139 3.8e-06 55.5 36 66.7


User provided reference genes

Program Settings