Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_37421 Corchorus olitorius HOM05D003704 ORTHO05D005892 4.5e-186 654.4 326 100.0
Thecc.05G198600 Theobroma cacao HOM05D003704 ORTHO05D005892 1.3e-164 583.2 325 89.5
Duzib128G1318 Durio zibethinus HOM05D003704 ORTHO05D005892 3.7e-164 581.6 325 88.9
Gohir.D08G245550 Gossypium hirsutum HOM05D003704 ORTHO05D005892 2.6e-162 575.5 325 88.0
Gorai.004G262000 Gossypium raimondii HOM05D003704 ORTHO05D005892 5.9e-162 574.3 325 88.0
Gohir.A08G225100 Gossypium hirsutum HOM05D003704 ORTHO05D005892 7.4e-141 504.2 325 80.0
Prupe.2G030100 Prunus persica HOM05D003704 ORTHO05D005892 9.4e-136 487.3 331 75.8
Atru.chr11.2463 Acer truncatum HOM05D003704 ORTHO05D005892 1.0e-134 483.8 330 77.0
Atru.chr11.2491 Acer truncatum HOM05D003704 ORTHO05D005892 6.7e-134 481.1 330 76.4
Ciclev10030496m.g Citrus clementina HOM05D003704 ORTHO05D005892 3.3e-133 478.8 330 75.2
PGR142G1874 Punica granatum HOM05D003704 ORTHO05D005892 9.7e-133 477.2 330 73.6
Cfa010865 Carpinus fangiana HOM05D003704 ORTHO05D005892 3.7e-132 475.3 327 73.7
CiPaw.13G011100 Carya illinoinensis HOM05D003704 ORTHO05D005892 1.4e-131 473.4 328 75.3
GSVIVG01029933001 Vitis vinifera HOM05D003704 ORTHO05D005892 1.4e-131 473.4 327 74.3
ClCG05G020780 Citrullus lanatus HOM05D003704 ORTHO05D005892 2.4e-131 472.6 330 74.5
MELO3C012449.2 Cucumis melo HOM05D003704 ORTHO05D005892 1.3e-129 466.8 330 73.9
CsaV3_5G036520 Cucumis sativus L. HOM05D003704 ORTHO05D005892 1.3e-129 466.8 330 73.9
GSVIVG01000835001 Vitis vinifera HOM05D003704 ORTHO05D005892 2.9e-129 465.7 326 73.6
Cpa.g.sc2782.1 Carica papaya HOM05D003704 ORTHO05D005892 8.5e-129 464.2 330 71.8
THA.LOC104801743 Tarenaya hassleriana HOM05D003704 ORTHO05D005892 9.4e-128 460.7 330 71.2
MD07G1033300 Malus domestica HOM05D003704 ORTHO05D005892 1.2e-127 460.3 326 73.3
Manes.04G164800 Manihot esculenta HOM05D003704 ORTHO05D005892 2.7e-127 459.1 333 72.7
Eucgr.G03254 Eucalyptus grandis HOM05D003704 ORTHO05D005892 6.1e-127 458.0 340 71.2
Sp4g21160 Schrenkiella parvula HOM05D003704 ORTHO05D005892 1.8e-126 456.4 328 70.1
Haze_03082 Corylus avellana HOM05D003704 ORTHO05D005892 3.0e-126 455.7 344 67.7
Sed0025295 Sechium edule HOM05D003704 ORTHO05D005892 3.0e-126 455.7 328 71.3
FAN03G0678 Fragaria x ananassa HOM05D003704 ORTHO05D005892 8.8e-126 454.1 331 72.5
BcaB02g09152 Brassica carinata HOM05D003704 ORTHO05D005892 2.0e-125 453.0 328 70.1
QL04p013824 Quercus lobata HOM05D003704 ORTHO05D005892 2.0e-125 453.0 335 70.4
Lalb_Chr17g0337761 Lupinus albus HOM05D003704 ORTHO05D005892 2.6e-125 452.6 329 70.8
Glyma.09G285300 Glycine max HOM05D003704 ORTHO05D005892 7.5e-125 451.1 330 70.9
Glyma.20G000700 Glycine max HOM05D003704 ORTHO05D005892 7.5e-125 451.1 331 71.0
Thhalv10016138m.g Eutrema salsugineum HOM05D003704 ORTHO05D005892 1.3e-124 450.3 328 69.5
CANSAT64G2305 Cannabis sativa HOM05D003704 ORTHO05D005892 1.7e-124 449.9 331 69.8
FAN10G3548 Fragaria x ananassa HOM05D003704 ORTHO05D005892 2.2e-124 449.5 331 71.9
FAN01G0955 Fragaria x ananassa HOM05D003704 ORTHO05D005892 2.8e-124 449.1 331 71.6
TWI15G0657 Tripterygium wilfordii HOM05D003704 ORTHO05D005892 4.8e-124 448.4 329 69.6
AT2G38770 Arabidopsis thaliana HOM05D003704 ORTHO05D005892 3.1e-123 445.7 328 69.2
RcHm_v2.0_Chr1g0319731 Rosa chinensis HOM05D003704 ORTHO05D005892 3.1e-123 445.7 332 72.0
Carub.0004s2079 Capsella rubella HOM05D003704 ORTHO05D005892 5.4e-123 444.9 328 69.2
TAR628G1325 Trochodendron aralioides HOM05D003704 ORTHO05D005892 5.4e-123 444.9 331 70.7
Medtr1g038815 Medicago truncatula HOM05D003704 ORTHO05D005892 9.1e-123 444.1 326 70.2
Ca_12375_v3 Cicer arietinum L. HOM05D003704 ORTHO05D005892 2.0e-122 443.0 325 69.8
VMungo0251G0473 Vigna mungo HOM05D003704 ORTHO05D005892 2.0e-122 443.0 332 69.3
AL4G36070 Arabidopsis lyrata HOM05D003704 ORTHO05D005892 3.5e-122 442.2 328 68.6
A05p07400 Brassica napus HOM05D003704 ORTHO05D005892 3.5e-122 442.2 325 69.5
Aa31LG5G20910 Aethionema arabicum HOM05D003704 ORTHO05D005892 5.9e-122 441.4 328 67.7
BraA05t19706Z Brassica rapa HOM05D003704 ORTHO05D005892 5.9e-122 441.4 325 69.2
Nitab4.5_0000316g0110 Nicotiana tabacum HOM05D003704 ORTHO05D005892 1.0e-121 440.7 344 68.0
Lj2g0008107 Lotus japonicus HOM05D003704 ORTHO05D005892 1.7e-121 439.9 326 70.2
Nitab4.5_0001888g0060 Nicotiana tabacum HOM05D003704 ORTHO05D005892 1.7e-121 439.9 344 68.0
MSTRG.28042 Avicennia marina HOM05D003704 ORTHO05D005892 6.5e-121 438.0 331 69.2
Dinv32045 Davidia involucrata HOM05D003704 ORTHO05D005892 6.5e-121 438.0 333 70.6
Nn5g29073 Nelumbo nucifera HOM05D003704 ORTHO05D005892 8.6e-121 437.6 328 69.5
ECA234G1951 Erigeron canadensis HOM05D003704 ORTHO05D005892 1.5e-120 436.8 333 68.8
Potri.003G201200 Populus trichocarpa HOM05D003704 ORTHO05D005892 2.5e-120 436.0 343 66.2
CARHR133480 Cardamine hirsuta HOM05D003704 ORTHO05D005892 3.2e-120 435.6 328 67.4
Migut.N01826 Erythranthe guttata HOM05D003704 ORTHO05D005892 3.2e-120 435.6 331 68.6
Sabra03G0148800 Salix brachista HOM05D003704 ORTHO05D005892 3.2e-120 435.6 343 67.3
CAN.G1571.5 Capsicum annuum HOM05D003704 ORTHO05D005892 5.5e-120 434.9 327 68.8
arahy.Tifrunner.gnm1.ann1.75MG08 Arachis hypogaea HOM05D003704 ORTHO05D005892 7.2e-120 434.5 325 69.2
Phvul.003G001700 Phaseolus vulgaris HOM05D003704 ORTHO05D005892 9.5e-120 434.1 330 68.8
Actinidia21525 Actinidia chinensis HOM05D003704 ORTHO05D005892 1.2e-119 433.7 326 69.3
BolC4t22475H Brassica oleracea HOM05D003704 ORTHO05D005892 1.2e-119 433.7 325 68.3
HanXRQChr17g0564051 Helianthus annuus HOM05D003704 ORTHO05D005892 1.2e-119 433.7 333 67.6
Lj2A1006G35 Lonicera japonica HOM05D003704 ORTHO05D005892 1.6e-119 433.3 331 69.8
CSS0035088 Camellia sinensis var. sinensis HOM05D003704 ORTHO05D005892 4.7e-119 431.8 328 69.2
C04p08870 Brassica napus HOM05D003704 ORTHO05D005892 6.1e-119 431.4 325 68.3
arahy.Tifrunner.gnm1.ann1.RZB3JM Arachis hypogaea HOM05D003704 ORTHO05D005892 1.0e-118 430.6 325 69.5
MBI05_g32455_MAGBIO Magnolia biondii HOM05D003704 ORTHO05D005892 1.0e-118 430.6 332 68.4
AUR62037223 Chenopodium quinoa HOM05D003704 ORTHO05D005892 3.0e-118 429.1 334 67.1
Migut.O00529 Erythranthe guttata HOM05D003704 ORTHO05D005892 3.0e-118 429.1 331 67.7
TPR.G35533 Trifolium pratense HOM05D003704 ORTHO05D005892 3.0e-118 429.1 325 69.8
BcaC02g07445 Brassica carinata HOM05D003704 ORTHO05D005892 4.0e-118 428.7 325 68.3
BolC4t28191H Brassica oleracea HOM05D003704 ORTHO05D005892 4.0e-118 428.7 325 68.3
Lsat_1_v5_gn_4_29820 Lactuca sativa HOM05D003704 ORTHO05D005892 4.0e-118 428.7 335 67.5
Sopen01g030440 Solanum pennellii HOM05D003704 ORTHO05D005892 4.0e-118 428.7 341 66.6
FvH4_7g02390 Fragaria vesca HOM05D003704 ORTHO05D005892 1.2e-117 427.2 326 69.9
Solyc01g068480.4 Solanum lycopersicum HOM05D003704 ORTHO05D005892 1.2e-117 427.2 341 66.6
C04p66890 Brassica napus HOM05D003704 ORTHO05D005892 1.5e-117 426.8 325 68.0
AUR62026830 Chenopodium quinoa HOM05D003704 ORTHO05D005892 1.5e-117 426.8 334 66.5
FAN06G0794 Fragaria x ananassa HOM05D003704 ORTHO05D005892 1.5e-117 426.8 326 69.9
Cc02_g29160 Coffea canephora HOM05D003704 ORTHO05D005892 2.6e-117 426.0 336 67.6
PSO541G6018 Papaver somniferum HOM05D003704 ORTHO05D005892 3.4e-117 425.6 326 68.4
BraA04t18425Z Brassica rapa HOM05D003704 ORTHO05D005892 5.7e-117 424.9 325 67.4
PSO781G0253 Papaver somniferum HOM05D003704 ORTHO05D005892 4.9e-116 421.8 326 67.8
Aqoxy1G04161 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 6.3e-116 421.4 332 68.4
Hund15714 Selenicereus undatus HOM05D003704 ORTHO05D005892 2.4e-115 419.5 353 64.6
Sc11g0006670 Simmondsia chinensis HOM05D003704 ORTHO05D005892 3.1e-115 419.1 334 67.4
Rhsim01G0123500 Rhododendron simsii HOM05D003704 ORTHO05D005892 1.6e-114 416.8 330 66.4
EL10Ac2g02849 Beta vulgaris HOM05D003704 ORTHO05D005892 5.9e-114 414.8 334 65.3
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 7.8e-114 414.5 333 65.5
Ah.12g065080 Amaranthus hybridus HOM05D003704 ORTHO05D005892 1.3e-113 413.7 330 65.2
ATR0564G498 Amborella trichopoda HOM05D003704 ORTHO05D005892 5.0e-113 411.8 334 65.3
Oeu003918.1 Olea europaea HOM05D003704 ORTHO05D005892 2.5e-112 409.5 377 59.7
DCAR_003239 Daucus carota HOM05D003704 ORTHO05D005892 1.4e-110 403.7 325 66.5
MD02G1293500 Malus domestica HOM05D003704 ORTHO05D005892 4.0e-110 402.1 276 73.6
SGA_v2.0_scaffold5G02930 Striga asiatica HOM05D003704 ORTHO05D005892 1.3e-108 397.1 378 58.7
CDE02G2053 Ceratophyllum demersum HOM05D003704 ORTHO05D005892 4.1e-107 392.1 329 61.1
vmacro12686 Vaccinium macrocarpon HOM05D003704 ORTHO05D005892 7.0e-107 391.3 408 54.2
Psat6g100680 Pisum sativum HOM05D003704 ORTHO05D005892 6.6e-105 384.8 327 63.9
unitig_21.g20278 Utricularia gibba HOM05D003704 ORTHO05D005892 4.9e-100 368.6 325 62.8
Zm00001eb018810 Zea mays HOM05D003704 ORTHO05D005892 5.4e-99 365.2 331 58.6
Peaxi162Scf00309g00333 Petunia axillaris HOM05D003704 ORTHO05D005892 6.0e-98 361.7 340 59.1
SEGI_24800 Sequoiadendron giganteum HOM05D003704 ORTHO05D005892 3.3e-96 355.9 325 59.1
BcaNung07214 Brassica carinata HOM05D003704 ORTHO05D005892 3.3e-88 329.3 222 73.0
Gorai.010G147800 Gossypium raimondii HOM05D003704 ORTHO05D005892 3.4e-85 319.3 221 75.6
Mapoly0170s0020 Marchantia polymorpha HOM05D003704 ORTHO05D005892 1.0e-81 307.8 334 53.9
AagrBONN_evm.TU.Sc2ySwM_344.1100 Anthoceros agrestis HOM05D003704 ORTHO05D005892 4.9e-76 288.9 321 52.0
Aqoxy263s005 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 3.3e-72 276.2 196 73.5
CBR_g49869 Chara braunii HOM05D003704 ORTHO05D005892 1.6e-71 273.9 355 46.2
Pp3c21_9820 Physcomitrium patens HOM05D003704 ORTHO05D005892 2.4e-67 260.0 258 54.7
Cre06.g300750 Chlamydomonas reinhardtii HOM05D003704 ORTHO05D005892 3.5e-66 256.1 316 45.3
PSO781G0329 Papaver somniferum HOM05D003704 ORTHO05D005892 1.5e-64 250.8 220 61.4
SMO230G0016 Selaginella moellendorffii HOM05D003704 ORTHO05D005892 1.9e-59 233.8 254 50.4
Psat4g010680 Pisum sativum HOM05D003704 ORTHO05D005892 1.3e-55 221.1 172 66.3
HPP92_001561 Vanilla planifolia HOM05D003704 ORTHO05D005892 7.1e-51 205.3 170 64.1
MCO01G629 Micromonas commoda HOM05D003704 ORTHO05D005892 7.9e-42 175.3 261 38.7
RcHm_v2.0_Chr1g0320051 Rosa chinensis HOM05D003704 ORTHO05D005892 2.3e-41 173.7 147 68.0
QL07p028220 Quercus lobata HOM05D003704 ORTHO05D005892 1.3e-39 167.9 140 65.0
HPP92_001562 Vanilla planifolia HOM05D003704 ORTHO05D005892 2.4e-38 163.7 143 58.7
Lalb_Chr10g0094791 Lupinus albus HOM05D003704 ORTHO05D028681 8.5e-36 155.2 88 81.8
SGA_v2.0_scaffold354G49736 Striga asiatica HOM05D003704 ORTHO05D005892 1.8e-30 137.5 347 35.4
BcaB06g28494 Brassica carinata HOM05D003704 ORTHO05D040007 2.7e-26 123.6 100 63.0
C04p60420 Brassica napus HOM05D003704 ORTHO05D040007 3.6e-26 123.2 88 68.2
PRCOL_00007279 Prasinoderma coloniale HOM05D003704 ORTHO05D005892 2.2e-23 114.0 306 30.1
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 6.3e-23 112.5 287 27.9
Psat5g110280 Pisum sativum HOM05D003704 ORTHO05D005892 2.4e-22 110.5 73 69.9
RcHm_v2.0_Chr1g0320421 Rosa chinensis HOM05D003704 ORTHO05D017707 2.8e-15 87.0 85 58.8
RcHm_v2.0_Chr1g0320091 Rosa chinensis HOM05D003704 ORTHO05D017707 4.1e-14 83.2 68 67.6
QL01p034783 Quercus lobata HOM05D003704 ORTHO05D005892 7.2e-11 72.4 46 71.7
CARHR288720 Cardamine hirsuta HOM05D003704 ORTHO05D005892 1.2e-10 71.6 120 40.0
RcHm_v2.0_Chr1g0320881 Rosa chinensis HOM05D003704 ORTHO05D028681 1.2e-08 65.1 117 38.5
MD02G1293400 Malus domestica HOM05D003704 ORTHO05D005892 2.2e-07 60.8 42 73.8
RcHm_v2.0_Chr1g0320381 Rosa chinensis HOM05D003704 ORTHO05D028681 3.1e-06 57.0 30 80.0


User provided reference genes

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