Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.6e-294 1014.2 523 100.0
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 4.6e-225 784.6 466 90.1
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 6.0e-225 784.3 466 89.3
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 4.7e-222 774.6 466 88.4
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 4.7e-222 774.6 466 88.4
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 1.1e-221 773.5 466 88.2
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 9.3e-210 733.8 471 83.0
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 1.2e-209 733.4 470 83.6
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 3.9e-208 728.4 471 83.0
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 8.7e-208 727.2 470 81.9
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 8.7e-208 727.2 470 82.6
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 3.3e-207 725.3 470 82.6
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 5.6e-207 724.5 470 81.7
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 1.6e-206 723.0 455 85.1
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 3.6e-206 721.8 468 82.5
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 6.2e-206 721.1 470 82.6
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 3.1e-205 718.8 468 82.3
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 9.0e-205 717.2 453 83.7
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 4.5e-204 714.9 448 85.0
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 4.5e-204 714.9 470 80.6
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 9.9e-204 713.8 470 81.1
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 1.3e-203 713.4 470 80.9
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 3.8e-203 711.8 470 80.6
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 6.4e-203 711.1 454 84.1
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 8.4e-203 710.7 470 80.6
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 8.4e-203 710.7 470 81.5
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 8.4e-203 710.7 452 83.0
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 8.4e-203 710.7 461 81.1
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 8.4e-203 710.7 469 81.2
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 1.4e-202 709.9 470 80.9
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 2.4e-202 709.1 467 81.6
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.4e-202 708.0 453 83.2
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 3.5e-201 705.3 453 82.8
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 7.9e-201 704.1 484 78.3
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 3.9e-200 701.8 471 80.5
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 5.1e-200 701.4 466 79.8
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.1e-199 700.3 466 79.0
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 1.5e-199 699.9 470 79.8
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 4.3e-199 698.4 466 79.8
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 4.3e-199 698.4 466 79.8
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 4.3e-199 698.4 466 79.8
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 7.4e-199 697.6 470 80.6
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 9.6e-199 697.2 453 80.8
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.8e-198 695.7 472 78.8
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 3.7e-198 695.3 452 82.3
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 6.2e-198 694.5 452 81.6
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.1e-197 693.7 457 81.8
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 5.3e-197 691.4 467 79.2
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 9.0e-197 690.6 454 81.1
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 7.6e-196 687.6 447 81.4
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 1.7e-195 686.4 466 79.4
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 1.7e-195 686.4 471 78.6
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 2.9e-195 685.6 447 81.2
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 2.9e-195 685.6 470 78.7
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 2.9e-195 685.6 433 84.3
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 4.9e-195 684.9 466 78.3
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 6.4e-195 684.5 470 78.3
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 1.4e-194 683.3 466 78.1
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 7.1e-194 681.0 475 78.5
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 7.1e-194 681.0 466 77.9
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 9.3e-194 680.6 470 77.7
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 2.1e-193 679.5 456 78.3
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 2.1e-193 679.5 470 75.7
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 2.1e-193 679.5 470 75.7
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 2.1e-193 679.5 447 79.4
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 3.5e-193 678.7 466 77.9
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 4.6e-193 678.3 447 79.4
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 4.6e-193 678.3 450 79.1
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 6.0e-193 677.9 447 79.2
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 7.9e-193 677.6 467 77.7
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 7.9e-193 677.6 447 79.2
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.0e-192 677.2 459 79.5
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 1.3e-192 676.8 464 76.7
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 1.3e-192 676.8 464 76.7
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 1.3e-192 676.8 451 80.0
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 1.8e-192 676.4 493 75.1
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 1.8e-192 676.4 483 75.4
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 3.9e-192 675.2 447 78.7
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 3.9e-192 675.2 464 76.5
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 5.1e-192 674.9 470 77.2
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 5.1e-192 674.9 467 78.4
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 6.7e-192 674.5 471 75.4
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 1.1e-191 673.7 453 77.3
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 1.5e-191 673.3 466 77.0
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 3.3e-191 672.2 465 76.6
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 4.3e-191 671.8 448 79.9
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 4.3e-191 671.8 466 76.4
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 1.6e-190 669.8 447 80.1
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 4.8e-190 668.3 460 77.8
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.8e-189 666.4 478 74.7
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 2.4e-189 666.0 488 74.6
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 9.0e-189 664.1 453 76.2
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 2.0e-188 662.9 470 74.5
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 6.0e-185 651.4 451 76.1
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 7.9e-185 651.0 430 79.5
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 2.3e-184 649.4 452 76.3
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 1.6e-182 643.3 472 73.1
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 1.6e-182 643.3 453 74.6
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 4.1e-181 638.6 468 71.8
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 5.9e-180 634.8 345 96.2
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 5.9e-180 634.8 428 79.0
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 2.5e-175 619.4 460 71.3
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 5.9e-172 608.2 452 71.5
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 3.0e-168 595.9 476 68.1
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.0e-152 542.7 447 63.8
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.0e-152 542.7 447 63.8
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.0e-151 540.0 323 86.7
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 2.6e-151 539.7 443 62.8
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 5.7e-151 538.5 403 72.5
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 1.0e-147 527.7 449 62.8
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 3.8e-147 525.8 449 62.6
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.7e-145 518.8 320 82.8
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 7.0e-133 478.4 302 79.8
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.5e-127 460.7 443 53.7
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.5e-127 460.7 286 83.9
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 2.0e-127 460.3 446 61.2
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 4.3e-122 442.6 445 53.0
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 8.0e-121 438.3 321 72.3
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 5.0e-115 419.1 397 57.9
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 7.3e-106 388.7 291 74.6
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 3.9e-99 366.3 280 72.5
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 1.1e-93 348.2 392 46.4
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 9.9e-87 325.1 407 44.2
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 6.9e-80 302.4 181 81.8
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 2.3e-75 287.3 193 82.9
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 3.8e-70 270.0 475 35.8
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.7e-68 263.8 155 84.5
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 4.6e-60 236.5 192 72.4
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.3e-57 228.4 210 61.9
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 1.5e-55 221.5 181 69.6
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 9.4e-45 185.7 144 72.2
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.8e-43 181.4 150 68.7
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.8e-43 181.4 111 87.4
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 8.8e-43 179.1 92 94.6
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.6e-39 168.3 111 76.6
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.0e-35 154.1 76 98.7
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 4.1e-32 143.7 99 75.8
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 2.7e-31 141.0 339 29.5
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.5e-31 140.2 118 67.8
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 2.2e-30 137.9 99 73.7
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 2.2e-30 137.9 99 73.7
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.6e-23 115.2 181 44.2
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.3e-22 112.1 108 60.2
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 5.0e-22 110.2 107 60.7
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 5.5e-21 106.7 63 81.0
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.6e-20 104.0 57 86.0
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 4.0e-19 100.5 77 67.5
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 4.0e-19 100.5 59 83.1
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 1.2e-15 89.0 65 70.8
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 1.9e-13 81.6 60 70.0
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 1.8e-11 75.1 40 92.5


User provided reference genes

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