Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 0.0e+00 1200.3 598 100.0
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 1.7e-284 982.2 599 83.0
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 1.6e-282 975.7 601 81.7
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 4.2e-275 951.0 599 79.6
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 5.7e-272 940.6 599 79.0
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 3.0e-228 795.4 637 65.8
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 9.5e-227 790.4 636 66.4
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 4.0e-225 785.0 642 64.2
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 1.7e-223 779.6 637 63.7
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 2.4e-222 775.8 639 64.0
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 5.2e-217 758.1 639 62.1
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 1.2e-216 756.9 621 64.4
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 1.5e-216 756.5 638 62.7
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 2.0e-216 756.1 640 62.7
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 3.4e-216 755.4 464 80.4
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 5.4e-214 748.0 678 59.1
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 4.6e-213 745.0 619 63.5
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 6.0e-213 744.6 642 60.9
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 1.3e-212 743.4 627 60.9
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 5.1e-212 741.5 642 61.5
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 6.9e-209 731.1 610 62.6
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 3.4e-208 728.8 633 60.2
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 2.2e-207 726.1 613 62.2
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 7.1e-206 721.1 609 61.6
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 6.0e-205 718.0 637 59.5
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 1.0e-204 717.2 618 60.4
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 2.3e-204 716.1 643 59.7
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 1.6e-197 693.3 624 57.9
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 1.5e-195 686.8 661 55.1
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 1.9e-195 686.4 637 57.8
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 3.3e-195 685.6 643 58.9
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 6.2e-194 681.4 639 57.0
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 3.8e-191 672.2 627 56.8
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 6.5e-191 671.4 647 56.1
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 3.2e-190 669.1 627 58.1
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.2e-190 669.1 647 56.0
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 4.2e-190 668.7 651 56.4
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 5.5e-190 668.3 646 55.1
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 9.3e-190 667.5 668 55.1
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 5.1e-188 661.8 639 55.6
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 6.7e-188 661.4 634 55.7
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 1.9e-187 659.8 639 56.5
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 5.7e-187 658.3 641 55.4
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 3.1e-185 652.5 624 57.5
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 5.3e-185 651.7 651 54.5
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 1.2e-184 650.6 557 61.9
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.7e-183 646.7 695 51.7
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 3.8e-183 645.6 569 60.6
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 1.3e-180 637.1 651 52.8
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 5.1e-180 635.2 630 54.8
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 5.7e-179 631.7 617 56.1
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 2.2e-178 629.8 628 53.7
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 3.7e-178 629.0 611 55.5
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 2.4e-177 626.3 629 53.6
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 4.1e-177 625.5 805 47.0
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 5.9e-176 621.7 646 52.2
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 3.8e-175 619.0 517 64.6
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 5.5e-174 615.1 621 55.9
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 1.2e-173 614.0 626 52.6
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 2.1e-173 613.2 627 52.3
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 1.0e-172 610.9 623 53.1
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 1.0e-172 610.9 623 53.1
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 1.0e-172 610.9 623 53.1
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 1.0e-172 610.9 623 53.1
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 1.8e-172 610.1 623 53.1
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 5.7e-171 605.1 628 52.2
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 3.1e-169 599.4 630 51.6
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 3.4e-168 595.9 612 53.6
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 5.9e-168 595.1 640 53.9
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 1.3e-167 594.0 625 50.6
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 2.1e-165 586.6 604 54.1
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 1.3e-162 577.4 554 56.5
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.6e-160 570.5 613 49.9
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 6.7e-156 555.1 545 55.4
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 3.7e-154 549.3 479 58.7
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 7.0e-153 545.0 608 50.3
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 1.2e-152 544.3 617 50.6
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 1.7e-151 540.4 596 51.5
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 1.1e-150 537.7 596 51.3
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 2.1e-149 533.5 523 55.4
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 1.0e-148 531.2 520 56.0
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 1.4e-148 530.8 602 50.0
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 1.7e-146 523.9 603 50.1
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 2.4e-145 520.0 606 49.8
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 5.9e-144 515.4 608 48.2
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 9.5e-142 508.1 618 48.4
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 8.0e-141 505.0 600 48.2
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 5.2e-140 502.3 596 47.7
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 5.2e-140 502.3 593 46.9
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.8e-137 493.8 506 52.6
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 1.8e-132 477.2 630 46.2
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 8.9e-132 474.9 511 52.6
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 8.0e-125 451.8 450 53.6
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 1.3e-122 444.5 526 49.8
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 1.7e-111 407.5 542 44.5
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 6.2e-109 399.1 583 43.7
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 4.4e-107 392.9 449 47.9
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 5.8e-107 392.5 630 40.0
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 7.6e-107 392.1 603 40.1
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 3.0e-103 380.2 615 40.0
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 3.9e-103 379.8 604 38.6
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 6.9e-92 342.4 710 35.8
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 1.7e-90 337.8 545 40.2
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 9.0e-84 315.5 493 41.0
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.7e-82 311.2 394 45.7
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 1.3e-79 301.6 405 44.0
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.3e-77 295.0 271 57.2
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 7.1e-73 279.3 189 73.5
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 4.3e-70 270.0 189 72.0
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 1.2e-67 261.9 875 28.2
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 4.2e-65 253.4 310 50.6
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 3.0e-63 247.3 597 32.0
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.8e-52 211.5 174 61.5
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.8e-47 194.9 138 72.5
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.5e-46 191.8 144 66.0
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 2.0e-46 191.4 347 34.6
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 4.5e-43 180.3 151 61.6
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.0e-39 169.1 136 64.7
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 4.0e-39 167.2 133 63.9
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 4.8e-37 160.2 129 65.9
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 4.8e-37 160.2 131 61.1
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 5.9e-35 153.3 121 58.7
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 4.2e-33 147.1 137 52.6
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.2e-32 145.6 139 51.8
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 4.7e-32 143.7 111 67.6
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 4.7e-32 143.7 108 66.7
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 4.0e-31 140.6 247 36.8
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 1.3e-29 135.6 265 35.5
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 4.8e-29 133.7 163 45.4
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 1.3e-26 125.6 140 54.3
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 1.7e-26 125.2 281 32.4
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 5.0e-26 123.6 101 59.4
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 3.0e-23 114.4 149 42.3
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 3.4e-22 110.9 109 55.0
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 1.3e-21 109.0 353 27.5
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 1.3e-21 109.0 135 48.1
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.7e-21 108.6 75 68.0
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 7.0e-20 103.2 91 59.3
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 2.7e-19 101.3 209 34.0
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 8.6e-18 96.3 57 77.2
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 1.6e-16 92.0 55 72.7
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 5.2e-15 87.0 53 75.5
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 6.8e-15 86.7 77 53.2
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 2.0e-11 75.1 62 54.8
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 3.5e-11 74.3 115 37.4
RcHm_v2.0_Chr5g0078731 Rosa chinensis HOM05D004944 ORTHO05D005989 3.3e-09 67.8 99 40.4
RcHm_v2.0_Chr2g0114761 Rosa chinensis HOM05D004944 ORTHO05D005989 5.6e-09 67.0 99 40.4


User provided reference genes

Program Settings