Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 2.2e-120 435.6 218 100.0
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 3.4e-89 332.0 210 75.7
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 4.4e-89 331.6 213 75.1
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 5.8e-89 331.3 213 75.1
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 5.8e-89 331.3 213 75.1
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 7.5e-89 330.9 201 79.1
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 1.3e-88 330.1 213 74.2
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 1.4e-87 326.6 207 74.9
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.4e-87 326.6 213 74.2
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 1.4e-87 326.6 213 74.2
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 1.4e-87 326.6 204 77.0
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.9e-87 326.2 214 74.3
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 3.2e-87 325.5 214 74.3
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 3.2e-87 325.5 213 74.6
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 4.1e-87 325.1 213 73.2
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 4.1e-87 325.1 214 75.2
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 5.4e-87 324.7 213 74.2
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 5.4e-87 324.7 213 74.2
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 7.1e-87 324.3 213 74.2
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 7.1e-87 324.3 214 72.0
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 7.1e-87 324.3 201 78.6
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 9.2e-87 323.9 214 75.2
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 1.2e-86 323.6 213 74.2
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 2.1e-86 322.8 211 73.9
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 2.1e-86 322.8 213 73.7
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 2.7e-86 322.4 205 76.6
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 3.5e-86 322.0 213 73.7
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 3.5e-86 322.0 203 76.8
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 6.0e-86 321.2 207 73.4
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 7.8e-86 320.9 213 71.8
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 1.7e-85 319.7 213 72.8
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.7e-85 319.7 212 71.7
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 1.7e-85 319.7 213 72.8
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 2.3e-85 319.3 213 74.6
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 2.3e-85 319.3 212 71.7
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 2.3e-85 319.3 207 72.5
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 2.3e-85 319.3 214 73.8
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 3.0e-85 318.9 214 74.3
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 3.9e-85 318.5 205 75.1
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.1e-85 318.2 207 72.9
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 5.1e-85 318.2 201 75.6
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 5.1e-85 318.2 214 73.8
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.5e-84 316.6 213 73.2
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 1.5e-84 316.6 213 72.3
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.9e-84 316.2 207 72.0
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.3e-84 315.5 207 71.5
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 3.3e-84 315.5 201 73.6
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.3e-84 315.1 201 75.6
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.3e-84 315.1 201 75.6
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 5.6e-84 314.7 213 73.2
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 7.3e-84 314.3 204 74.5
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 7.3e-84 314.3 214 72.4
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 9.5e-84 313.9 209 74.6
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 9.5e-84 313.9 213 73.2
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 1.2e-83 313.5 246 65.4
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.6e-83 313.2 213 72.3
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 2.1e-83 312.8 201 76.1
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 2.1e-83 312.8 232 67.7
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 4.7e-83 311.6 213 70.9
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 8.1e-83 310.8 202 73.8
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 8.1e-83 310.8 192 78.1
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 8.1e-83 310.8 194 77.8
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 1.1e-82 310.5 214 73.4
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 1.1e-82 310.5 214 73.4
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 1.1e-82 310.5 214 73.4
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.1e-82 310.5 214 70.1
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 1.1e-82 310.5 204 72.1
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.4e-82 310.1 192 77.6
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 2.3e-82 309.3 213 71.8
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 3.1e-82 308.9 208 71.2
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 4.0e-82 308.5 213 71.8
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 1.2e-81 307.0 214 73.4
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 3.4e-81 305.4 213 70.4
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 3.4e-81 305.4 214 72.4
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 3.4e-81 305.4 214 68.7
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 4.4e-81 305.1 194 75.8
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 7.6e-81 304.3 184 80.4
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 9.9e-81 303.9 210 71.0
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.3e-80 303.5 214 69.2
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 2.2e-80 302.8 205 71.7
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 1.4e-79 300.1 214 71.5
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.4e-79 300.1 206 70.4
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 2.4e-79 299.3 213 68.1
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.2e-79 298.9 214 68.7
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 5.4e-79 298.1 184 78.3
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 7.1e-79 297.7 213 68.5
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 9.2e-79 297.4 201 71.6
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.2e-78 297.0 239 62.8
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 1.6e-78 296.6 214 70.6
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.6e-78 296.6 206 69.4
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 3.5e-78 295.4 211 68.2
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 4.6e-78 295.0 213 69.5
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 6.0e-78 294.7 209 69.4
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 6.0e-78 294.7 203 71.4
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.0e-77 292.4 262 56.9
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 6.6e-77 291.2 183 74.3
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.1e-76 290.4 206 69.9
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 7.3e-76 287.7 204 68.1
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 7.3e-76 287.7 201 69.7
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 1.4e-74 283.5 256 59.4
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 1.8e-74 283.1 313 50.2
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 2.4e-71 272.7 171 76.6
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 2.1e-70 269.6 171 76.0
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 3.5e-70 268.9 215 65.1
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.3e-69 266.9 172 75.0
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 1.3e-67 260.4 171 73.1
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 1.4e-66 256.9 152 81.6
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.0e-66 255.4 167 73.1
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 2.1e-62 243.0 145 78.6
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 3.5e-62 242.3 205 62.4
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 3.9e-61 238.8 190 61.6
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 8.7e-61 237.7 201 63.2
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 3.3e-60 235.7 190 59.5
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 8.4e-56 221.1 133 78.2
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.1e-55 220.7 189 56.6
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 2.0e-49 199.9 125 74.4
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.6e-46 190.3 111 80.2
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 1.0e-45 187.6 169 57.4
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 3.0e-45 186.0 131 69.5
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.1e-42 177.6 169 53.8
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 1.5e-41 173.7 157 58.6
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 8.5e-40 167.9 189 46.0
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 4.6e-38 162.2 114 70.2
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 4.6e-38 162.2 114 70.2
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 1.5e-33 147.1 197 42.6
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 5.9e-33 145.2 100 71.0
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.0e-29 134.4 113 64.6
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 5.1e-29 132.1 141 47.5
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 5.1e-29 132.1 93 68.8
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 1.5e-28 130.6 68 86.8
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 1.3e-27 127.5 93 64.5
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 4.8e-27 125.6 76 73.7
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 6.3e-27 125.2 93 67.7
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 1.8e-26 123.6 85 70.6
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 3.4e-25 119.4 92 63.0
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 5.0e-24 115.5 85 60.0
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 9.4e-23 111.3 106 55.7
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 2.3e-21 106.7 108 51.9
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 2.3e-21 106.7 211 35.1
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.8e-19 99.8 67 74.6
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 1.8e-18 97.1 51 84.3
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.2e-17 94.4 69 65.2
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 2.0e-17 93.6 181 33.7
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 1.3e-16 90.9 66 65.2
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 5.0e-16 89.0 84 51.2
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.1e-15 87.8 74 62.2
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.1e-14 82.0 62 67.7
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.1e-10 71.2 65 60.0
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 1.6e-09 67.4 39 82.1
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 2.5e-07 60.1 45 57.8
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 2.5e-07 60.1 32 81.2
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 9.4e-07 58.2 30 86.7
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 4.7e-06 55.8 90 41.1


User provided reference genes

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